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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91601 3jbn:AU (4.7) BS01 rna ? GO:0003735 ... Q8IDS6 26432834
    91602 3jbn:AU (4.7) BS02 rna ? GO:0003735 ... Q8IDS6 26432834
    91603 3jbn:AV (4.7) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    91604 3jbn:AV (4.7) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    91605 3jbn:AW (4.7) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    91606 3jbn:AW (4.7) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    91607 3jbn:AX (4.7) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    91608 3jbn:AY (4.7) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    91609 3jbn:AY (4.7) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    91610 3jbn:AZ (4.7) BS01 rna ? GO:0002181 ... O77364 26432834
    91611 3jbn:AZ (4.7) BS02 rna ? GO:0002181 ... O77364 26432834
    91612 3jbn:Aa (4.7) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    91613 3jbn:Ab (4.7) BS01 rna ? GO:0002181 ... Q8I713 26432834
    91614 3jbn:Ac (4.7) BS01 rna ? GO:0003723 ... C0H4L5 26432834
    91615 3jbn:Ac (4.7) BS02 rna ? GO:0003723 ... C0H4L5 26432834
    91616 3jbn:Ad (4.7) BS01 rna ? GO:0003735 ... Q8II62 26432834
    91617 3jbn:Ae (4.7) BS01 rna ? GO:0003735 ... C0H4H3 26432834
    91618 3jbn:Ae (4.7) BS02 rna ? GO:0003735 ... C0H4H3 26432834
    91619 3jbn:Af (4.7) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    91620 3jbn:Ag (4.7) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    91621 3jbn:Ag (4.7) BS02 rna ? GO:0003700 ... C6S3G4 26432834
    91622 3jbn:Ah (4.7) BS01 rna ? GO:0003735 ... O96184 26432834
    91623 3jbn:Ah (4.7) BS02 rna ? GO:0003735 ... O96184 26432834
    91624 3jbn:Ai (4.7) BS01 rna ? GO:0003735 ... O97231 26432834
    91625 3jbn:B (4.7) BS01 rna ? GO:0003735 ... O97313 26432834
    91626 3jbn:C (4.7) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    91627 3jbn:D (4.7) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    91628 3jbn:E (4.7) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    91629 3jbn:F (4.7) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    91630 3jbn:G (4.7) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    91631 3jbn:H (4.7) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    91632 3jbn:I (4.7) BS01 rna ? GO:0000028 ... Q8IBN5 26432834
    91633 3jbn:J (4.7) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    91634 3jbn:K (4.7) BS01 rna ? GO:0003735 ... O77395 26432834
    91635 3jbn:L (4.7) BS01 rna ? GO:0000462 ... Q8IM10 26432834
    91636 3jbn:L (4.7) BS02 rna ? GO:0000462 ... Q8IM10 26432834
    91637 3jbn:M (4.7) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    91638 3jbn:N (4.7) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    91639 3jbn:P (4.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    91640 3jbn:Q (4.7) BS01 rna ? GO:0003735 ... O97248 26432834
    91641 3jbn:S (4.7) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    91642 3jbn:T (4.7) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    91643 3jbn:U (4.7) BS01 rna ? GO:0003735 ... Q8IDB0 26432834
    91644 3jbn:U (4.7) BS02 rna ? GO:0003735 ... Q8IDB0 26432834
    91645 3jbn:V (4.7) BS01 rna ? GO:0003735 ... O77381 26432834
    91646 3jbn:W (4.7) BS01 rna ? GO:0003735 ... Q8I502 26432834
    91647 3jbn:X (4.7) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    91648 3jbn:Y (4.7) BS01 rna ? GO:0000028 ... Q8IFP2 26432834
    91649 3jbn:Z (4.7) BS01 rna ? GO:0003735 ... Q8IHS5 26432834
    91650 3jbo:1 (5.8) BS01 rna ? GO:0003735 ... Q8I3R6 26432834
    91651 3jbo:3 (5.8) BS01 rna ? GO:0003735 ... O96258 26432834
    91652 3jbo:4 (5.8) BS01 rna ? GO:0000028 ... Q8IEN2 26432834
    91653 3jbo:5 (5.8) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    91654 3jbo:6 (5.8) BS01 rna ? GO:0003735 ... O96269 26432834
    91655 3jbo:A1 (5.8) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    91656 3jbo:A2 (5.8) BS01 rna ? GO:0005840 ... Q8IHU0 26432834
    91657 3jbo:A3 (5.8) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    91658 3jbo:A3 (5.8) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    91659 3jbo:A4 (5.8) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    91660 3jbo:A6 (5.8) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    91661 3jbo:A7 (5.8) BS01 rna ? GO:0003735 ... Q8I463 26432834
    91662 3jbo:A8 (5.8) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    91663 3jbo:A9 (5.8) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    91664 3jbo:AD (5.8) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    91665 3jbo:AD (5.8) BS02 rna ? GO:0002181 ... Q8I3T9 26432834
    91666 3jbo:AE (5.8) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    91667 3jbo:AF (5.8) BS01 rna ? GO:0003723 ... Q8I431 26432834
    91668 3jbo:AF (5.8) BS02 rna ? GO:0003723 ... Q8I431 26432834
    91669 3jbo:AG (5.8) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    91670 3jbo:AG (5.8) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    91671 3jbo:AH (5.8) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    91672 3jbo:AI (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    91673 3jbo:AK (5.8) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    91674 3jbo:AL (5.8) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    91675 3jbo:AM (5.8) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    91676 3jbo:AM (5.8) BS02 rna ? GO:0003735 ... Q8IE09 26432834
    91677 3jbo:AN (5.8) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    91678 3jbo:AO (5.8) BS01 rna ? GO:0003735 ... C6KT23 26432834
    91679 3jbo:AP (5.8) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    91680 3jbo:AP (5.8) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    91681 3jbo:AQ (5.8) BS01 rna ? GO:0000027 ... Q8ILV2 26432834
    91682 3jbo:AQ (5.8) BS02 rna ? GO:0000027 ... Q8ILV2 26432834
    91683 3jbo:AR (5.8) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    91684 3jbo:AR (5.8) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    91685 3jbo:AS (5.8) BS01 rna ? GO:0003723 ... C0H5G3 26432834
    91686 3jbo:AT (5.8) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    91687 3jbo:AT (5.8) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    91688 3jbo:AU (5.8) BS01 rna ? GO:0003735 ... Q8IDS6 26432834
    91689 3jbo:AU (5.8) BS02 rna ? GO:0003735 ... Q8IDS6 26432834
    91690 3jbo:AV (5.8) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    91691 3jbo:AV (5.8) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    91692 3jbo:AW (5.8) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    91693 3jbo:AW (5.8) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    91694 3jbo:AX (5.8) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    91695 3jbo:AY (5.8) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    91696 3jbo:AY (5.8) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    91697 3jbo:AZ (5.8) BS01 rna ? GO:0002181 ... O77364 26432834
    91698 3jbo:AZ (5.8) BS02 rna ? GO:0002181 ... O77364 26432834
    91699 3jbo:Aa (5.8) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    91700 3jbo:Ab (5.8) BS01 rna ? GO:0002181 ... Q8I713 26432834
    91701 3jbo:Ac (5.8) BS01 rna ? GO:0003723 ... C0H4L5 26432834
    91702 3jbo:Ac (5.8) BS02 rna ? GO:0003723 ... C0H4L5 26432834
    91703 3jbo:Ad (5.8) BS01 rna ? GO:0003735 ... Q8II62 26432834
    91704 3jbo:Ae (5.8) BS01 rna ? GO:0003735 ... C0H4H3 26432834
    91705 3jbo:Ae (5.8) BS02 rna ? GO:0003735 ... C0H4H3 26432834
    91706 3jbo:Af (5.8) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    91707 3jbo:Ag (5.8) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    91708 3jbo:Ah (5.8) BS01 rna ? GO:0003735 ... O96184 26432834
    91709 3jbo:Ah (5.8) BS02 rna ? GO:0003735 ... O96184 26432834
    91710 3jbo:Ai (5.8) BS01 rna ? GO:0003735 ... O97231 26432834
    91711 3jbo:Ai (5.8) BS02 rna ? GO:0003735 ... O97231 26432834
    91712 3jbo:B (5.8) BS01 rna ? GO:0003735 ... O97313 26432834
    91713 3jbo:C (5.8) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    91714 3jbo:D (5.8) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    91715 3jbo:E (5.8) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    91716 3jbo:F (5.8) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    91717 3jbo:G (5.8) BS01 rna ? GO:0003723 ... Q8IL02 26432834
    91718 3jbo:H (5.8) BS01 rna ? GO:0003735 ... Q8IDR9 26432834
    91719 3jbo:I (5.8) BS01 rna ? GO:0000028 ... Q8IBN5 26432834
    91720 3jbo:J (5.8) BS01 rna ? GO:0003735 ... Q8IET7 26432834
    91721 3jbo:K (5.8) BS01 rna ? GO:0003735 ... O77395 26432834
    91722 3jbo:L (5.8) BS01 rna ? GO:0000462 ... Q8IM10 26432834
    91723 3jbo:L (5.8) BS02 rna ? GO:0000462 ... Q8IM10 26432834
    91724 3jbo:M (5.8) BS01 rna ? GO:0000462 ... Q8IAX5 26432834
    91725 3jbo:N (5.8) BS01 rna ? GO:0003735 ... Q8IK02 26432834
    91726 3jbo:P (5.8) BS01 rna N/A GO:0003735 ... N/A 26432834
    91727 3jbo:Q (5.8) BS01 rna ? GO:0003735 ... O97248 26432834
    91728 3jbo:S (5.8) BS01 rna ? GO:0003676 ... Q8IIA2 26432834
    91729 3jbo:T (5.8) BS01 rna ? GO:0003735 ... C0H4K8 26432834
    91730 3jbo:U (5.8) BS01 rna ? GO:0003735 ... Q8IDB0 26432834
    91731 3jbo:U (5.8) BS02 rna ? GO:0003735 ... Q8IDB0 26432834
    91732 3jbo:V (5.8) BS01 rna ? GO:0003735 ... O77381 26432834
    91733 3jbo:W (5.8) BS01 rna ? GO:0003735 ... Q8I502 26432834
    91734 3jbo:X (5.8) BS01 rna ? GO:0003723 ... C0H5C2 26432834
    91735 3jbo:Y (5.8) BS01 rna ? GO:0000028 ... Q8IFP2 26432834
    91736 3jbp:1 (6.7) BS01 rna ? GO:0003735 ... Q8I3R6 26432834
    91737 3jbp:3 (6.7) BS01 rna ? GO:0003735 ... O96258 26432834
    91738 3jbp:4 (6.7) BS01 rna ? GO:0000028 ... Q8IEN2 26432834
    91739 3jbp:5 (6.7) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    91740 3jbp:6 (6.7) BS01 rna ? GO:0003735 ... O96269 26432834
    91741 3jbp:A1 (6.7) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    91742 3jbp:A2 (6.7) BS01 rna ? GO:0005840 ... Q8IHU0 26432834
    91743 3jbp:A3 (6.7) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    91744 3jbp:A3 (6.7) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    91745 3jbp:A4 (6.7) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    91746 3jbp:A6 (6.7) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    91747 3jbp:A7 (6.7) BS01 rna ? GO:0003735 ... Q8I463 26432834
    91748 3jbp:A8 (6.7) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    91749 3jbp:A9 (6.7) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    91750 3jbp:AD (6.7) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    91751 3jbp:AE (6.7) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    91752 3jbp:AF (6.7) BS01 rna ? GO:0003723 ... Q8I431 26432834
    91753 3jbp:AF (6.7) BS02 rna ? GO:0003723 ... Q8I431 26432834
    91754 3jbp:AG (6.7) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    91755 3jbp:AG (6.7) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    91756 3jbp:AH (6.7) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    91757 3jbp:AI (6.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    91758 3jbp:AK (6.7) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    91759 3jbp:AL (6.7) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    91760 3jbp:AM (6.7) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    91761 3jbp:AN (6.7) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    91762 3jbp:AO (6.7) BS01 rna ? GO:0003735 ... C6KT23 26432834
    91763 3jbp:AP (6.7) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    91764 3jbp:AP (6.7) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    91765 3jbp:AQ (6.7) BS01 rna ? GO:0000027 ... Q8ILV2 26432834
    91766 3jbp:AQ (6.7) BS02 rna ? GO:0000027 ... Q8ILV2 26432834
    91767 3jbp:AR (6.7) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    91768 3jbp:AR (6.7) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    91769 3jbp:AS (6.7) BS01 rna ? GO:0003723 ... C0H5G3 26432834
    91770 3jbp:AT (6.7) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    91771 3jbp:AT (6.7) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    91772 3jbp:AU (6.7) BS01 rna ? GO:0003735 ... Q8IDS6 26432834
    91773 3jbp:AU (6.7) BS02 rna ? GO:0003735 ... Q8IDS6 26432834
    91774 3jbp:AV (6.7) BS01 rna ? GO:0003735 ... Q8ILK3 26432834
    91775 3jbp:AV (6.7) BS02 rna ? GO:0003735 ... Q8ILK3 26432834
    91776 3jbp:AW (6.7) BS01 rna ? GO:0003735 ... Q8IDI5 26432834
    91777 3jbp:AW (6.7) BS02 rna ? GO:0003735 ... Q8IDI5 26432834
    91778 3jbp:AX (6.7) BS01 rna ? GO:0003735 ... Q8IB51 26432834
    91779 3jbp:AY (6.7) BS01 rna ? GO:0003735 ... Q8IE82 26432834
    91780 3jbp:AY (6.7) BS02 rna ? GO:0003735 ... Q8IE82 26432834
    91781 3jbp:AZ (6.7) BS01 rna ? GO:0002181 ... O77364 26432834
    91782 3jbp:AZ (6.7) BS02 rna ? GO:0002181 ... O77364 26432834
    91783 3jbp:Aa (6.7) BS01 rna ? GO:0003735 ... Q8IBY4 26432834
    91784 3jbp:Ab (6.7) BS01 rna ? GO:0002181 ... Q8I713 26432834
    91785 3jbp:Ac (6.7) BS01 rna ? GO:0003723 ... C0H4L5 26432834
    91786 3jbp:Ac (6.7) BS02 rna ? GO:0003723 ... C0H4L5 26432834
    91787 3jbp:Ad (6.7) BS01 rna ? GO:0003735 ... Q8II62 26432834
    91788 3jbp:Ae (6.7) BS01 rna ? GO:0003735 ... C0H4H3 26432834
    91789 3jbp:Ae (6.7) BS02 rna ? GO:0003735 ... C0H4H3 26432834
    91790 3jbp:Af (6.7) BS01 rna ? GO:0003735 ... Q8ID50 26432834
    91791 3jbp:Ag (6.7) BS01 rna ? GO:0003700 ... C6S3G4 26432834
    91792 3jbp:Ag (6.7) BS02 rna ? GO:0003700 ... C6S3G4 26432834
    91793 3jbp:Ah (6.7) BS01 rna ? GO:0003735 ... O96184 26432834
    91794 3jbp:Ai (6.7) BS01 rna ? GO:0003735 ... O97231 26432834
    91795 3jbp:Ai (6.7) BS02 rna ? GO:0003735 ... O97231 26432834
    91796 3jbp:B (6.7) BS01 rna ? GO:0003735 ... O97313 26432834
    91797 3jbp:C (6.7) BS01 rna ? GO:0003735 ... Q8IJD4 26432834
    91798 3jbp:D (6.7) BS01 rna ? GO:0003723 ... Q8IKH8 26432834
    91799 3jbp:E (6.7) BS01 rna ? GO:0003723 ... Q8I3R0 26432834
    91800 3jbp:F (6.7) BS01 rna ? GO:0003723 ... Q8IIU8 26432834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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