Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91401 3jan:o (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91402 3jan:o (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    91403 3jan:p (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91404 3jan:r (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91405 3jan:z (3.75) BS01 rna N/A GO:0003924 ... N/A 26158507
    91406 3jao:A (23.0) BS01 GTP ? GO:0000226 ... A0A0M3KKT1 26211611
    91407 3jao:B (23.0) BS01 G2P ? GO:0000226 ... A0A0M3KKT2 26211611
    91408 3jap:A (4.9) BS01 rna ? GO:0000028 ... Q6CN12 26212456
    91409 3jap:B (4.9) BS01 rna ? GO:0003735 ... Q6CWD0 26212456
    91410 3jap:C (4.9) BS01 rna ? GO:0003723 ... Q6CKL3 26212456
    91411 3jap:D (4.9) BS01 rna ? GO:0003723 ... Q6CRK7 26212456
    91412 3jap:E (4.9) BS01 rna ? GO:0003723 ... Q6CWJ2 26212456
    91413 3jap:F (4.9) BS01 rna ? GO:0000028 ... Q6CRA3 26212456
    91414 3jap:F (4.9) BS02 rna ? GO:0000028 ... Q6CRA3 26212456
    91415 3jap:G (4.9) BS01 rna ? GO:0003735 ... Q6CM04 26212456
    91416 3jap:H (4.9) BS01 rna ? GO:0003735 ... Q6CTD6 26212456
    91417 3jap:I (4.9) BS01 rna ? GO:0000462 ... Q6CMG3 26212456
    91418 3jap:J (4.9) BS01 rna ? GO:0003723 ... Q6CM18 26212456
    91419 3jap:K (4.9) BS01 rna ? GO:0003723 ... Q6CVZ5 26212456
    91420 3jap:L (4.9) BS01 rna ? GO:0003735 ... Q6CX80 26212456
    91421 3jap:M (4.9) BS01 rna ? GO:0003735 ... Q6CLU4 26212456
    91422 3jap:N (4.9) BS01 rna ? GO:0003735 ... Q6CJK0 26212456
    91423 3jap:O (4.9) BS01 rna ? GO:0000028 ... P27069 26212456
    91424 3jap:P (4.9) BS01 rna ? GO:0000028 ... Q6CKV4 26212456
    91425 3jap:Q (4.9) BS01 rna ? GO:0000462 ... Q875N2 26212456
    91426 3jap:R (4.9) BS01 rna ? GO:0003735 ... Q6CWU3 26212456
    91427 3jap:S (4.9) BS01 rna ? GO:0003676 ... Q6CWT9 26212456
    91428 3jap:T (4.9) BS01 rna ? GO:0000028 ... Q6CXM0 26212456
    91429 3jap:U (4.9) BS01 rna ? GO:0003735 ... Q6CIM1 26212456
    91430 3jap:W (4.9) BS01 rna ? GO:0003735 ... Q6CW21 26212456
    91431 3jap:X (4.9) BS01 rna ? GO:0003735 ... F2Z602 26212456
    91432 3jap:Y (4.9) BS01 rna ? GO:0003735 ... Q6CU44 26212456
    91433 3jap:Z (4.9) BS01 rna ? GO:0003735 ... Q6CW78 26212456
    91434 3jap:a (4.9) BS01 rna ? GO:0003729 ... Q6CS01 26212456
    91435 3jap:a (4.9) BS02 ZN ? GO:0003729 ... Q6CS01 26212456
    91436 3jap:b (4.9) BS01 rna ? GO:0000028 ... Q6CNL2 26212456
    91437 3jap:b (4.9) BS02 ZN ? GO:0000028 ... Q6CNL2 26212456
    91438 3jap:c (4.9) BS01 rna ? GO:0000028 ... P33285 26212456
    91439 3jap:c (4.9) BS02 rna ? GO:0000028 ... P33285 26212456
    91440 3jap:d (4.9) BS01 rna ? GO:0003735 ... Q6CPG3 26212456
    91441 3jap:e (4.9) BS01 rna ? GO:0003735 ... Q6CUH5 26212456
    91442 3jap:f (4.9) BS01 rna ? GO:0003735 ... P69061 26212456
    91443 3jap:f (4.9) BS02 ZN ? GO:0003735 ... P69061 26212456
    91444 3jap:g (4.9) BS01 rna ? GO:0001934 ... Q6CNI7 26212456
    91445 3jap:i (4.9) BS01 rna ? GO:0001677 ... P38912 26212456
    91446 3jap:i (4.9) BS02 rna ? GO:0001677 ... P38912 26212456
    91447 3jap:j (4.9) BS01 rna ? GO:0001731 ... P20459 26212456
    91448 3jap:j (4.9) BS02 rna ? GO:0001731 ... P20459 26212456
    91449 3jap:k (4.9) BS01 rna 3.6.5.3 GO:0000049 ... P32481 26212456
    91450 3jap:k (4.9) BS02 MET 3.6.5.3 GO:0000049 ... P32481 26212456
    91451 3jap:l (4.9) BS01 rna ? GO:0001731 ... P09064 26212456
    91452 3jap:l (4.9) BS02 rna ? GO:0001731 ... P09064 26212456
    91453 3jap:l (4.9) BS03 ZN ? GO:0001731 ... P09064 26212456
    91454 3jap:m (4.9) BS01 rna ? GO:0001731 ... P32911 26212456
    91455 3jap:m (4.9) BS02 rna ? GO:0001731 ... P32911 26212456
    91456 3jap:p (4.9) BS01 rna ? GO:0003723 ... P32497 26212456
    91457 3jar:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91458 3jar:B (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91459 3jar:C (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91460 3jar:D (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91461 3jar:E (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91462 3jar:F (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91463 3jar:G (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91464 3jar:H (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91465 3jar:I (3.4) BS01 GDP ? GO:0000226 ... P02554 26234155
    91466 3jar:J (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91467 3jar:K (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91468 3jar:L (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91469 3jas:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91470 3jas:B (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91471 3jas:C (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91472 3jas:D (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91473 3jas:E (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91474 3jas:F (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91475 3jas:G (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91476 3jas:H (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91477 3jas:I (3.5) BS01 GDP ? GO:0000226 ... P02554 26234155
    91478 3jas:J (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91479 3jas:K (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91480 3jas:L (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91481 3jat:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91482 3jat:B (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91483 3jat:C (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91484 3jat:D (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91485 3jat:E (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91486 3jat:F (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91487 3jat:G (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91488 3jat:H (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91489 3jat:I (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91490 3jat:J (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91491 3jat:K (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91492 3jat:L (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91493 3jaw:A (3.9) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91494 3jaw:B (3.9) BS01 GSP ? GO:0000226 ... P02554 26234155
    91495 3jaw:C (3.9) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91496 3jaw:D (3.9) BS01 GSP ? GO:0000226 ... P02554 26234155
    91497 3jb9:A (3.6) BS01 rna ? GO:0000244 ... O14187 26292707
    91498 3jb9:A (3.6) BS02 rna ? GO:0000244 ... O14187 26292707
    91499 3jb9:A (3.6) BS03 rna ? GO:0000244 ... O14187 26292707
    91500 3jb9:A (3.6) BS04 rna ? GO:0000244 ... O14187 26292707
    91501 3jb9:B (3.6) BS01 rna ? GO:0000244 ... O94316 26292707
    91502 3jb9:B (3.6) BS02 GDP ? GO:0000244 ... O94316 26292707
    91503 3jb9:D (3.6) BS01 rna ? GO:0000243 ... Q9UUC6 26292707
    91504 3jb9:E (3.6) BS01 rna ? GO:0000395 ... Q10163 26292707
    91505 3jb9:F (3.6) BS01 rna ? GO:0000243 ... O42661 26292707
    91506 3jb9:G (3.6) BS01 rna ? GO:0000387 ... O14036 26292707
    91507 3jb9:H (3.6) BS01 rna ? GO:0000387 ... Q9USZ3 26292707
    91508 3jb9:I (3.6) BS01 rna ? GO:0000387 ... O59734 26292707
    91509 3jb9:J (3.6) BS01 rna ? GO:0000387 ... O74966 26292707
    91510 3jb9:L (3.6) BS01 rna ? GO:0000398 ... O94620 26292707
    91511 3jb9:M (3.6) BS01 rna ? GO:0000398 ... Q09882 26292707
    91512 3jb9:M (3.6) BS02 rna ? GO:0000398 ... Q09882 26292707
    91513 3jb9:R (3.6) BS01 rna ? GO:0000398 ... P87312 26292707
    91514 3jb9:W (3.6) BS01 rna ? GO:0000398 ... P39964 26292707
    91515 3jb9:X (3.6) BS01 ADP ? GO:0000398 ... O94508 26292707
    91516 3jb9:Z (3.6) BS01 rna ? GO:0000243 ... Q9UUC6 26292707
    91517 3jb9:b (3.6) BS01 rna ? GO:0000395 ... Q10163 26292707
    91518 3jb9:c (3.6) BS01 rna ? GO:0000398 ... Q09909 26292707
    91519 3jb9:c (3.6) BS02 ZN ? GO:0000398 ... Q09909 26292707
    91520 3jb9:e (3.6) BS01 rna ? GO:0000398 ... O74772 26292707
    91521 3jb9:e (3.6) BS02 rna ? GO:0000398 ... O74772 26292707
    91522 3jb9:e (3.6) BS03 ZN ? GO:0000398 ... O74772 26292707
    91523 3jb9:e (3.6) BS04 ZN ? GO:0000398 ... O74772 26292707
    91524 3jb9:e (3.6) BS05 ZN ? GO:0000398 ... O74772 26292707
    91525 3jb9:f (3.6) BS01 rna ? GO:0000243 ... O42661 26292707
    91526 3jb9:g (3.6) BS01 rna ? GO:0000398 ... O43071 26292707
    91527 3jb9:h (3.6) BS01 rna ? GO:0000398 ... P78794 26292707
    91528 3jb9:k (3.6) BS01 rna ? GO:0003676 ... Q7LL14 26292707
    91529 3jb9:l (3.6) BS01 rna ? GO:0000387 ... O14036 26292707
    91530 3jb9:m (3.6) BS01 rna ? GO:0000387 ... Q9USZ3 26292707
    91531 3jb9:n (3.6) BS01 rna ? GO:0000387 ... O59734 26292707
    91532 3jb9:o (3.6) BS01 rna ? GO:0000387 ... O74966 26292707
    91533 3jbb:A (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91534 3jbb:B (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91535 3jbb:B (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91536 3jbb:C (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91537 3jbb:D (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91538 3jbb:D (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91539 3jbb:E (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91540 3jbb:F (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91541 3jbb:F (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91542 3jbb:G (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91543 3jbb:H (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91544 3jbb:H (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91545 3jbb:I (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91546 3jbb:J (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91547 3jbb:J (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91548 3jbb:K (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    91549 3jbb:L (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91550 3jbb:L (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    91551 3jbi:A (8.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91552 3jbi:A (8.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91553 3jbi:B (8.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91554 3jbi:B (8.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91555 3jbj:A (7.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91556 3jbj:A (7.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91557 3jbj:B (7.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91558 3jbj:B (7.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91559 3jbk:A (8.2) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91560 3jbk:A (8.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91561 3jbk:B (8.2) BS01 MG 3.6.4.- GO:0000287 ... P68135 26493222
    91562 3jbk:B (8.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    91563 3jbn:1 (4.7) BS01 rna ? GO:0003735 ... Q8I3R6 26432834
    91564 3jbn:3 (4.7) BS01 rna ? GO:0003735 ... O96258 26432834
    91565 3jbn:4 (4.7) BS01 rna ? GO:0000028 ... Q8IEN2 26432834
    91566 3jbn:5 (4.7) BS01 rna ? GO:0000028 ... Q8IKL9 26432834
    91567 3jbn:6 (4.7) BS01 rna ? GO:0003735 ... O96269 26432834
    91568 3jbn:A1 (4.7) BS01 rna ? GO:0003735 ... Q8IKM5 26432834
    91569 3jbn:A2 (4.7) BS01 rna ? GO:0005840 ... Q8IHU0 26432834
    91570 3jbn:A3 (4.7) BS01 rna ? GO:0000463 ... Q8IIB4 26432834
    91571 3jbn:A3 (4.7) BS02 rna ? GO:0000463 ... Q8IIB4 26432834
    91572 3jbn:A4 (4.7) BS01 rna ? GO:0002181 ... C6S3J6 26432834
    91573 3jbn:A6 (4.7) BS01 rna ? GO:0003723 ... Q8IJK8 26432834
    91574 3jbn:A7 (4.7) BS01 rna ? GO:0003735 ... Q8I463 26432834
    91575 3jbn:A8 (4.7) BS01 rna ? GO:0003735 ... Q8I3B0 26432834
    91576 3jbn:A9 (4.7) BS01 rna ? GO:0003735 ... Q8IHT9 26432834
    91577 3jbn:AD (4.7) BS01 rna ? GO:0002181 ... Q8I3T9 26432834
    91578 3jbn:AD (4.7) BS02 rna ? GO:0002181 ... Q8I3T9 26432834
    91579 3jbn:AE (4.7) BS01 rna ? GO:0003723 ... Q8IJC6 26432834
    91580 3jbn:AF (4.7) BS01 rna ? GO:0003723 ... Q8I431 26432834
    91581 3jbn:AF (4.7) BS02 rna ? GO:0003723 ... Q8I431 26432834
    91582 3jbn:AG (4.7) BS01 rna ? GO:0003723 ... Q8IBQ6 26432834
    91583 3jbn:AG (4.7) BS02 rna ? GO:0003723 ... Q8IBQ6 26432834
    91584 3jbn:AH (4.7) BS01 rna ? GO:0002181 ... Q8IE85 26432834
    91585 3jbn:AI (4.7) BS01 rna N/A GO:0003735 ... N/A 26432834
    91586 3jbn:AK (4.7) BS01 rna ? GO:0003729 ... Q8IJZ7 26432834
    91587 3jbn:AL (4.7) BS01 rna ? GO:0003723 ... Q8IAX6 26432834
    91588 3jbn:AL (4.7) BS02 rna ? GO:0003723 ... Q8IAX6 26432834
    91589 3jbn:AM (4.7) BS01 rna ? GO:0003735 ... Q8IE09 26432834
    91590 3jbn:AN (4.7) BS01 rna ? GO:0003723 ... Q8ILE8 26432834
    91591 3jbn:AO (4.7) BS01 rna ? GO:0003735 ... C6KT23 26432834
    91592 3jbn:AP (4.7) BS01 rna ? GO:0002181 ... C0H4A6 26432834
    91593 3jbn:AP (4.7) BS02 rna ? GO:0002181 ... C0H4A6 26432834
    91594 3jbn:AQ (4.7) BS01 rna ? GO:0000027 ... Q8ILV2 26432834
    91595 3jbn:AQ (4.7) BS02 rna ? GO:0000027 ... Q8ILV2 26432834
    91596 3jbn:AR (4.7) BS01 rna ? GO:0000027 ... Q8ILL3 26432834
    91597 3jbn:AR (4.7) BS02 rna ? GO:0000027 ... Q8ILL3 26432834
    91598 3jbn:AS (4.7) BS01 rna ? GO:0003723 ... C0H5G3 26432834
    91599 3jbn:AT (4.7) BS01 rna ? GO:0003723 ... C6KSY6 26432834
    91600 3jbn:AT (4.7) BS02 rna ? GO:0003723 ... C6KSY6 26432834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417