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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    91201 3jaj:SQ (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91202 3jaj:SR (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91203 3jaj:SS (3.75) BS01 rna N/A GO:0003676 ... N/A 26158507
    91204 3jaj:ST (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91205 3jaj:SU (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91206 3jaj:SW (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91207 3jaj:SX (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91208 3jaj:SY (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91209 3jaj:Sa (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91210 3jaj:Sa (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    91211 3jaj:Sb (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91212 3jaj:Sc (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91213 3jaj:Sd (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91214 3jaj:Se (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91215 3jaj:Sf (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91216 3jaj:T (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91217 3jaj:T (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91218 3jaj:U (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91219 3jaj:V (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91220 3jaj:X (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91221 3jaj:X (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91222 3jaj:Y (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91223 3jaj:Y (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    91224 3jaj:Z (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91225 3jaj:a (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91226 3jaj:b (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91227 3jaj:d (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91228 3jaj:e (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91229 3jaj:f (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91230 3jaj:g (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91231 3jaj:h (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    91232 3jaj:h (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    91233 3jaj:i (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91234 3jaj:j (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91235 3jaj:j (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91236 3jaj:j (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    91237 3jaj:k (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91238 3jaj:l (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91239 3jaj:l (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91240 3jaj:m (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91241 3jaj:m (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    91242 3jaj:o (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91243 3jaj:o (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91244 3jaj:o (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    91245 3jaj:p (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91246 3jaj:r (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91247 3jaj:z (3.75) BS01 rna N/A GO:0003924 ... N/A 26158507
    91248 3jak:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91249 3jak:B (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91250 3jak:C (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91251 3jak:D (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91252 3jak:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91253 3jak:F (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91254 3jak:G (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91255 3jak:H (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91256 3jak:I (3.3) BS01 GSP ? GO:0000226 ... P02554 26234155
    91257 3jak:J (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91258 3jak:K (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91259 3jak:L (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91260 3jal:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91261 3jal:B (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91262 3jal:C (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91263 3jal:D (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91264 3jal:E (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91265 3jal:F (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91266 3jal:G (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91267 3jal:H (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91268 3jal:I (3.5) BS01 G2P ? GO:0000226 ... P02554 26234155
    91269 3jal:J (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91270 3jal:K (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91271 3jal:L (3.5) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 26234155
    91272 3jam:A (3.46) BS01 rna ? GO:0000028 ... Q6CN12 26212456
    91273 3jam:B (3.46) BS01 rna ? GO:0003735 ... Q6CWD0 26212456
    91274 3jam:C (3.46) BS01 rna ? GO:0003723 ... Q6CKL3 26212456
    91275 3jam:D (3.46) BS01 rna ? GO:0003723 ... Q6CRK7 26212456
    91276 3jam:E (3.46) BS01 rna ? GO:0003723 ... Q6CWJ2 26212456
    91277 3jam:F (3.46) BS01 rna ? GO:0000028 ... Q6CRA3 26212456
    91278 3jam:G (3.46) BS01 rna ? GO:0003735 ... Q6CM04 26212456
    91279 3jam:H (3.46) BS01 rna ? GO:0003735 ... Q6CTD6 26212456
    91280 3jam:I (3.46) BS01 rna ? GO:0000462 ... Q6CMG3 26212456
    91281 3jam:J (3.46) BS01 rna ? GO:0003723 ... Q6CM18 26212456
    91282 3jam:K (3.46) BS01 rna ? GO:0003723 ... Q6CVZ5 26212456
    91283 3jam:L (3.46) BS01 rna ? GO:0003735 ... Q6CX80 26212456
    91284 3jam:M (3.46) BS01 rna ? GO:0003735 ... Q6CLU4 26212456
    91285 3jam:N (3.46) BS01 rna ? GO:0003735 ... Q6CJK0 26212456
    91286 3jam:O (3.46) BS01 rna ? GO:0000028 ... P27069 26212456
    91287 3jam:P (3.46) BS01 rna ? GO:0000028 ... Q6CKV4 26212456
    91288 3jam:Q (3.46) BS01 rna ? GO:0000462 ... Q875N2 26212456
    91289 3jam:R (3.46) BS01 rna ? GO:0003735 ... Q6CWU3 26212456
    91290 3jam:S (3.46) BS01 rna ? GO:0003676 ... Q6CWT9 26212456
    91291 3jam:T (3.46) BS01 rna ? GO:0000028 ... Q6CXM0 26212456
    91292 3jam:U (3.46) BS01 rna ? GO:0003735 ... Q6CIM1 26212456
    91293 3jam:W (3.46) BS01 rna ? GO:0003735 ... Q6CW21 26212456
    91294 3jam:X (3.46) BS01 rna ? GO:0003735 ... F2Z602 26212456
    91295 3jam:Y (3.46) BS01 rna ? GO:0003735 ... Q6CU44 26212456
    91296 3jam:Z (3.46) BS01 rna ? GO:0003735 ... Q6CW78 26212456
    91297 3jam:a (3.46) BS01 rna ? GO:0003729 ... Q6CS01 26212456
    91298 3jam:a (3.46) BS02 ZN ? GO:0003729 ... Q6CS01 26212456
    91299 3jam:b (3.46) BS01 rna ? GO:0000028 ... Q6CNL2 26212456
    91300 3jam:c (3.46) BS01 rna ? GO:0000028 ... P33285 26212456
    91301 3jam:d (3.46) BS01 rna ? GO:0003735 ... Q6CPG3 26212456
    91302 3jam:e (3.46) BS01 rna ? GO:0003735 ... Q6CUH5 26212456
    91303 3jam:f (3.46) BS01 rna ? GO:0003735 ... P69061 26212456
    91304 3jam:g (3.46) BS01 rna ? GO:0001934 ... Q6CNI7 26212456
    91305 3jam:i (3.46) BS01 rna ? GO:0001677 ... P38912 26212456
    91306 3jam:j (3.46) BS01 rna ? GO:0001731 ... P32911 26212456
    91307 3jan:6 (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91308 3jan:9 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    91309 3jan:A (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91310 3jan:B (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91311 3jan:C (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91312 3jan:C (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91313 3jan:D (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91314 3jan:D (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91315 3jan:E (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91316 3jan:G (3.75) BS01 rna N/A GO:0042254 ... N/A 26158507
    91317 3jan:G (3.75) BS02 rna N/A GO:0042254 ... N/A 26158507
    91318 3jan:H (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91319 3jan:I (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91320 3jan:I (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91321 3jan:J (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91322 3jan:J (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91323 3jan:J (3.75) BS03 rna N/A GO:0003735 ... N/A 26158507
    91324 3jan:K (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91325 3jan:K (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91326 3jan:L (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91327 3jan:L (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91328 3jan:M (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91329 3jan:N (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91330 3jan:N (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91331 3jan:O (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91332 3jan:P (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91333 3jan:P (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91334 3jan:Q (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91335 3jan:R (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91336 3jan:R (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    91337 3jan:S (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91338 3jan:S (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91339 3jan:S1 (3.75) BS01 rna N/A GO:0006614 ... N/A 26158507
    91340 3jan:S4 (3.75) BS01 rna N/A GO:0005786 ... N/A 26158507
    91341 3jan:S4 (3.75) BS02 rna N/A GO:0005786 ... N/A 26158507
    91342 3jan:SA (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91343 3jan:SB (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91344 3jan:SC (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91345 3jan:SD (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91346 3jan:SE (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91347 3jan:SF (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91348 3jan:SG (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91349 3jan:SH (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91350 3jan:SI (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91351 3jan:SJ (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91352 3jan:SL (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91353 3jan:SL (3.75) BS02 MG N/A GO:0003735 ... N/A 26158507
    91354 3jan:SM (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91355 3jan:SN (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91356 3jan:SN (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91357 3jan:SO (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91358 3jan:SP (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91359 3jan:SQ (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91360 3jan:SR (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91361 3jan:SS (3.75) BS01 rna N/A GO:0003676 ... N/A 26158507
    91362 3jan:ST (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91363 3jan:SU (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91364 3jan:SW (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91365 3jan:SX (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91366 3jan:SY (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91367 3jan:Sa (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91368 3jan:Sa (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    91369 3jan:Sb (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91370 3jan:Sc (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91371 3jan:Sd (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91372 3jan:Se (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91373 3jan:Sf (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91374 3jan:T (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91375 3jan:T (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91376 3jan:U (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91377 3jan:V (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91378 3jan:X (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91379 3jan:X (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91380 3jan:Y (3.75) BS01 rna N/A GO:0003723 ... N/A 26158507
    91381 3jan:Y (3.75) BS02 rna N/A GO:0003723 ... N/A 26158507
    91382 3jan:Z (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91383 3jan:a (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91384 3jan:b (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91385 3jan:d (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91386 3jan:e (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91387 3jan:f (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91388 3jan:g (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91389 3jan:h (3.75) BS01 rna N/A GO:0000463 ... N/A 26158507
    91390 3jan:h (3.75) BS02 rna N/A GO:0000463 ... N/A 26158507
    91391 3jan:i (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91392 3jan:j (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91393 3jan:j (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91394 3jan:j (3.75) BS03 ZN N/A GO:0003735 ... N/A 26158507
    91395 3jan:k (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91396 3jan:l (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91397 3jan:l (3.75) BS02 rna N/A GO:0003735 ... N/A 26158507
    91398 3jan:m (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    91399 3jan:m (3.75) BS02 ZN N/A GO:0003735 ... N/A 26158507
    91400 3jan:o (3.75) BS01 rna N/A GO:0003735 ... N/A 26158507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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