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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90801 3ja1:SP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 26229983
    90802 3ja1:SQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 26229983
    90803 3ja1:SR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 26229983
    90804 3ja1:SR (3.6) BS02 rna ? GO:0002181 ... P0A7T7 26229983
    90805 3ja1:SS (3.6) BS01 rna ? GO:0000028 ... P0A7U3 26229983
    90806 3ja1:SS (3.6) BS02 rna ? GO:0000028 ... P0A7U3 26229983
    90807 3ja1:ST (3.6) BS01 rna ? GO:0000028 ... P0A7U7 26229983
    90808 3ja1:SU (3.6) BS01 rna ? GO:0000028 ... P68679 26229983
    90809 3ja1:SU (3.6) BS02 rna ? GO:0000028 ... P68679 26229983
    90810 3ja8:2 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    90811 3ja8:2 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    90812 3ja8:3 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    90813 3ja8:3 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    90814 3ja8:4 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    90815 3ja8:4 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    90816 3ja8:5 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    90817 3ja8:5 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    90818 3ja8:6 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 26222030
    90819 3ja8:7 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 26222030
    90820 3jad:A (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    90821 3jad:A (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    90822 3jad:B (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    90823 3jad:B (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    90824 3jad:C (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    90825 3jad:C (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    90826 3jad:D (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    90827 3jad:D (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    90828 3jad:E (3.9) BS01 SY9 ? GO:0004888 ... O93430 26344198
    90829 3jad:E (3.9) BS02 SY9 ? GO:0004888 ... O93430 26344198
    90830 3jaf:A (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    90831 3jaf:A (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    90832 3jaf:B (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    90833 3jaf:B (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    90834 3jaf:C (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    90835 3jaf:C (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    90836 3jaf:D (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    90837 3jaf:D (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    90838 3jaf:E (3.8) BS01 IVM ? GO:0004888 ... O93430 26344198
    90839 3jaf:E (3.8) BS02 IVM ? GO:0004888 ... O93430 26344198
    90840 3jag:A (3.65) BS01 rna ? GO:0002181 ... G1TT27 26245381
    90841 3jag:AA (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90842 3jag:B (3.65) BS01 rna ? GO:0003723 ... G1TL06 26245381
    90843 3jag:BB (3.65) BS01 rna ? GO:0003735 ... G1SS70 26245381
    90844 3jag:C (3.65) BS01 rna ? GO:0003735 ... G1SVW5 26245381
    90845 3jag:C (3.65) BS02 rna ? GO:0003735 ... G1SVW5 26245381
    90846 3jag:CC (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    90847 3jag:D (3.65) BS01 rna ? GO:0000027 ... P19949 26245381
    90848 3jag:D (3.65) BS02 rna ? GO:0000027 ... P19949 26245381
    90849 3jag:DD (3.65) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 26245381
    90850 3jag:E (3.65) BS01 rna ? GO:0003735 ... G1TG04 26245381
    90851 3jag:EE (3.65) BS01 rna ? GO:0003723 ... G1TK17 26245381
    90852 3jag:FF (3.65) BS01 rna ? GO:0000028 ... G1TFM5 26245381
    90853 3jag:FF (3.65) BS02 rna ? GO:0000028 ... G1TFM5 26245381
    90854 3jag:G (3.65) BS01 rna ? GO:0042254 ... G1STW0 26245381
    90855 3jag:G (3.65) BS02 rna ? GO:0042254 ... G1STW0 26245381
    90856 3jag:GG (3.65) BS01 rna ? GO:0000082 ... G1TM55 26245381
    90857 3jag:H (3.65) BS01 rna ? GO:0002181 ... G1SWI6 26245381
    90858 3jag:HH (3.65) BS01 rna ? GO:0003735 ... G1SVB0 26245381
    90859 3jag:I (3.65) BS01 rna ? GO:0000027 ... B7NZQ2 26245381
    90860 3jag:I (3.65) BS02 rna ? GO:0000027 ... B7NZQ2 26245381
    90861 3jag:II (3.65) BS01 rna ? GO:0000462 ... G1TJW1 26245381
    90862 3jag:II (3.65) BS02 rna ? GO:0000462 ... G1TJW1 26245381
    90863 3jag:J (3.65) BS01 rna ? GO:0003723 ... G1TUB8 26245381
    90864 3jag:J (3.65) BS02 rna ? GO:0003723 ... G1TUB8 26245381
    90865 3jag:J (3.65) BS03 rna ? GO:0003723 ... G1TUB8 26245381
    90866 3jag:JJ (3.65) BS01 rna ? GO:0003723 ... B7NZS8 26245381
    90867 3jag:L (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90868 3jag:L (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    90869 3jag:LL (3.65) BS01 rna ? GO:0003735 ... G1TRM4 26245381
    90870 3jag:LL (3.65) BS02 MG ? GO:0003735 ... G1TRM4 26245381
    90871 3jag:M (3.65) BS01 rna ? GO:0003723 ... G1SZ12 26245381
    90872 3jag:MM (3.65) BS01 rna ? GO:0003735 ... G1SFR8 26245381
    90873 3jag:N (3.65) BS01 rna ? GO:0002181 ... G1T0C1 26245381
    90874 3jag:N (3.65) BS02 rna ? GO:0002181 ... G1T0C1 26245381
    90875 3jag:NN (3.65) BS01 rna ? GO:0003735 ... G1SP51 26245381
    90876 3jag:O (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90877 3jag:OO (3.65) BS01 rna ? GO:0000028 ... G1T1F0 26245381
    90878 3jag:P (3.65) BS01 peptide N/A GO:0003735 ... N/A 26245381
    90879 3jag:P (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    90880 3jag:P (3.65) BS03 rna N/A GO:0003735 ... N/A 26245381
    90881 3jag:PP (3.65) BS01 rna ? GO:0003723 ... G1U0Q2 26245381
    90882 3jag:Q (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90883 3jag:QQ (3.65) BS01 rna ? GO:0000462 ... G1SGX4 26245381
    90884 3jag:R (3.65) BS01 rna N/A GO:0003723 ... N/A 26245381
    90885 3jag:R (3.65) BS02 rna N/A GO:0003723 ... N/A 26245381
    90886 3jag:RR (3.65) BS01 rna ? GO:0003735 ... G1TU13 26245381
    90887 3jag:S (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90888 3jag:S (3.65) BS02 rna N/A GO:0003735 ... N/A 26245381
    90889 3jag:SS (3.65) BS01 rna ? GO:0003676 ... G1TPG3 26245381
    90890 3jag:T (3.65) BS01 rna ? GO:0003735 ... G1SHQ2 26245381
    90891 3jag:T (3.65) BS02 rna ? GO:0003735 ... G1SHQ2 26245381
    90892 3jag:TT (3.65) BS01 rna ? GO:0000028 ... G1TN62 26245381
    90893 3jag:U (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90894 3jag:UU (3.65) BS01 rna ? GO:0003723 ... G1SIZ2 26245381
    90895 3jag:V (3.65) BS01 rna ? GO:0000122 ... G1T6D1 26245381
    90896 3jag:WW (3.65) BS01 rna ? GO:0003735 ... G1TG89 26245381
    90897 3jag:X (3.65) BS01 rna ? GO:0003735 ... G1SE76 26245381
    90898 3jag:X (3.65) BS02 rna ? GO:0003735 ... G1SE76 26245381
    90899 3jag:XX (3.65) BS01 rna ? GO:0003735 ... G1SZ47 26245381
    90900 3jag:Y (3.65) BS01 rna ? GO:0002181 ... G1SQH0 26245381
    90901 3jag:Y (3.65) BS02 rna ? GO:0002181 ... G1SQH0 26245381
    90902 3jag:YY (3.65) BS01 rna ? GO:0003735 ... G1T3D8 26245381
    90903 3jag:Z (3.65) BS01 rna ? GO:0003735 ... G1TXF6 26245381
    90904 3jag:a (3.65) BS01 rna ? GO:0003735 ... G1SNY0 26245381
    90905 3jag:aa (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90906 3jag:aa (3.65) BS02 ZN N/A GO:0003735 ... N/A 26245381
    90907 3jag:b (3.65) BS01 rna ? GO:0003735 ... G1SGR6 26245381
    90908 3jag:bb (3.65) BS01 rna ? GO:0000028 ... G1TZ76 26245381
    90909 3jag:cc (3.65) BS01 rna ? GO:0003735 ... G1TIB4 26245381
    90910 3jag:d (3.65) BS01 rna ? GO:0003735 ... G1SHG0 26245381
    90911 3jag:dd (3.65) BS01 rna ? GO:0003735 ... G1U7M4 26245381
    90912 3jag:dd (3.65) BS02 ZN ? GO:0003735 ... G1U7M4 26245381
    90913 3jag:e (3.65) BS01 rna ? GO:0003735 ... G1TUN8 26245381
    90914 3jag:ee (3.65) BS01 rna ? GO:0003735 ... G1T8A2 26245381
    90915 3jag:f (3.65) BS01 rna ? GO:0000049 ... G1SF08 26245381
    90916 3jag:ff (3.65) BS01 rna ? GO:0003735 ... G1SK22 26245381
    90917 3jag:ff (3.65) BS02 ZN ? GO:0003735 ... G1SK22 26245381
    90918 3jag:g (3.65) BS01 rna ? GO:0003735 ... G1TXG5 26245381
    90919 3jag:g (3.65) BS02 ZN ? GO:0003735 ... G1TXG5 26245381
    90920 3jag:gg (3.65) BS01 rna ? GO:0001891 ... G1SJB4 26245381
    90921 3jag:h (3.65) BS01 rna ? GO:0000463 ... G1SIT5 26245381
    90922 3jag:h (3.65) BS02 rna ? GO:0000463 ... G1SIT5 26245381
    90923 3jag:i (3.65) BS01 rna ? GO:0002181 ... G1TTQ5 26245381
    90924 3jag:ii (3.65) BS01 rna ? GO:0000184 ... P62495 26245381
    90925 3jag:ii (3.65) BS02 rna ? GO:0000184 ... P62495 26245381
    90926 3jag:ii (3.65) BS03 rna ? GO:0000184 ... P62495 26245381
    90927 3jag:ii (3.65) BS04 rna ? GO:0000184 ... P62495 26245381
    90928 3jag:j (3.65) BS01 rna ? GO:0003735 ... U3KPD5 26245381
    90929 3jag:j (3.65) BS02 rna ? GO:0003735 ... U3KPD5 26245381
    90930 3jag:j (3.65) BS03 ZN ? GO:0003735 ... U3KPD5 26245381
    90931 3jag:k (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90932 3jag:l (3.65) BS01 rna ? GO:0003735 ... G1SYU7 26245381
    90933 3jag:l (3.65) BS02 rna ? GO:0003735 ... G1SYU7 26245381
    90934 3jag:m (3.65) BS01 rna N/A GO:0003735 ... N/A 26245381
    90935 3jag:m (3.65) BS02 ZN N/A GO:0003735 ... N/A 26245381
    90936 3jag:o (3.65) BS01 rna ? GO:0003735 ... G1T040 26245381
    90937 3jag:o (3.65) BS02 rna ? GO:0003735 ... G1T040 26245381
    90938 3jag:o (3.65) BS03 ZN ? GO:0003735 ... G1T040 26245381
    90939 3jag:p (3.65) BS01 rna ? GO:0003735 ... G1SY53 26245381
    90940 3jag:p (3.65) BS02 ZN ? GO:0003735 ... G1SY53 26245381
    90941 3jag:r (3.65) BS01 rna ? GO:0003735 ... G1U7L1 26245381
    90942 3jag:t (3.65) BS01 rna ? GO:0003723 ... G1SMR7 26245381
    90943 3jah:A (3.45) BS01 rna ? GO:0002181 ... G1TT27 26245381
    90944 3jah:AA (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90945 3jah:B (3.45) BS01 rna ? GO:0003723 ... G1TL06 26245381
    90946 3jah:BB (3.45) BS01 rna ? GO:0003735 ... G1SS70 26245381
    90947 3jah:C (3.45) BS01 rna ? GO:0003735 ... G1SVW5 26245381
    90948 3jah:C (3.45) BS02 rna ? GO:0003735 ... G1SVW5 26245381
    90949 3jah:CC (3.45) BS01 rna N/A GO:0003723 ... N/A 26245381
    90950 3jah:D (3.45) BS01 rna ? GO:0000027 ... P19949 26245381
    90951 3jah:D (3.45) BS02 rna ? GO:0000027 ... P19949 26245381
    90952 3jah:DD (3.45) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 26245381
    90953 3jah:E (3.45) BS01 rna ? GO:0003735 ... G1TG04 26245381
    90954 3jah:EE (3.45) BS01 rna ? GO:0003723 ... G1TK17 26245381
    90955 3jah:FF (3.45) BS01 rna ? GO:0000028 ... G1TFM5 26245381
    90956 3jah:FF (3.45) BS02 rna ? GO:0000028 ... G1TFM5 26245381
    90957 3jah:G (3.45) BS01 rna ? GO:0042254 ... G1STW0 26245381
    90958 3jah:G (3.45) BS02 rna ? GO:0042254 ... G1STW0 26245381
    90959 3jah:GG (3.45) BS01 rna ? GO:0000082 ... G1TM55 26245381
    90960 3jah:H (3.45) BS01 rna ? GO:0002181 ... G1SWI6 26245381
    90961 3jah:HH (3.45) BS01 rna ? GO:0003735 ... G1SVB0 26245381
    90962 3jah:I (3.45) BS01 rna ? GO:0000027 ... B7NZQ2 26245381
    90963 3jah:I (3.45) BS02 rna ? GO:0000027 ... B7NZQ2 26245381
    90964 3jah:II (3.45) BS01 rna ? GO:0000462 ... G1TJW1 26245381
    90965 3jah:II (3.45) BS02 rna ? GO:0000462 ... G1TJW1 26245381
    90966 3jah:J (3.45) BS01 rna ? GO:0003723 ... G1TUB8 26245381
    90967 3jah:J (3.45) BS02 rna ? GO:0003723 ... G1TUB8 26245381
    90968 3jah:J (3.45) BS03 rna ? GO:0003723 ... G1TUB8 26245381
    90969 3jah:JJ (3.45) BS01 rna ? GO:0003723 ... B7NZS8 26245381
    90970 3jah:L (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90971 3jah:L (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    90972 3jah:LL (3.45) BS01 rna ? GO:0003735 ... G1TRM4 26245381
    90973 3jah:LL (3.45) BS02 MG ? GO:0003735 ... G1TRM4 26245381
    90974 3jah:M (3.45) BS01 rna ? GO:0003723 ... G1SZ12 26245381
    90975 3jah:MM (3.45) BS01 rna ? GO:0003735 ... G1SFR8 26245381
    90976 3jah:N (3.45) BS01 rna ? GO:0002181 ... G1T0C1 26245381
    90977 3jah:N (3.45) BS02 rna ? GO:0002181 ... G1T0C1 26245381
    90978 3jah:NN (3.45) BS01 rna ? GO:0003735 ... G1SP51 26245381
    90979 3jah:O (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90980 3jah:OO (3.45) BS01 rna ? GO:0000028 ... G1T1F0 26245381
    90981 3jah:P (3.45) BS01 peptide N/A GO:0003735 ... N/A 26245381
    90982 3jah:P (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    90983 3jah:P (3.45) BS03 rna N/A GO:0003735 ... N/A 26245381
    90984 3jah:PP (3.45) BS01 rna ? GO:0003723 ... G1U0Q2 26245381
    90985 3jah:Q (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90986 3jah:QQ (3.45) BS01 rna ? GO:0000462 ... G1SGX4 26245381
    90987 3jah:R (3.45) BS01 rna N/A GO:0003723 ... N/A 26245381
    90988 3jah:R (3.45) BS02 rna N/A GO:0003723 ... N/A 26245381
    90989 3jah:RR (3.45) BS01 rna ? GO:0003735 ... G1TU13 26245381
    90990 3jah:S (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90991 3jah:S (3.45) BS02 rna N/A GO:0003735 ... N/A 26245381
    90992 3jah:SS (3.45) BS01 rna ? GO:0003676 ... G1TPG3 26245381
    90993 3jah:T (3.45) BS01 rna ? GO:0003735 ... G1SHQ2 26245381
    90994 3jah:T (3.45) BS02 rna ? GO:0003735 ... G1SHQ2 26245381
    90995 3jah:TT (3.45) BS01 rna ? GO:0000028 ... G1TN62 26245381
    90996 3jah:U (3.45) BS01 rna N/A GO:0003735 ... N/A 26245381
    90997 3jah:UU (3.45) BS01 rna ? GO:0003723 ... G1SIZ2 26245381
    90998 3jah:V (3.45) BS01 rna ? GO:0000122 ... G1T6D1 26245381
    90999 3jah:WW (3.45) BS01 rna ? GO:0003735 ... G1TG89 26245381
    91000 3jah:X (3.45) BS01 rna ? GO:0003735 ... G1SE76 26245381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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