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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90401 3j9m:I (3.5) BS01 rna ? GO:0003723 ... Q7Z7H8 25838379
    90402 3j9m:I (3.5) BS02 peptide ? GO:0003723 ... Q7Z7H8 25838379
    90403 3j9m:J (3.5) BS01 rna ? GO:0003723 ... Q9Y3B7 25838379
    90404 3j9m:K (3.5) BS01 rna ? GO:0003723 ... Q9BYD1 25838379
    90405 3j9m:L (3.5) BS01 rna ? GO:0003723 ... Q6P1L8 25838379
    90406 3j9m:M (3.5) BS01 rna ? GO:0003723 ... Q9P015 25838379
    90407 3j9m:N (3.5) BS01 rna ? GO:0003735 ... Q9NX20 25838379
    90408 3j9m:N (3.5) BS02 peptide ? GO:0003735 ... Q9NX20 25838379
    90409 3j9m:O (3.5) BS01 rna ? GO:0003735 ... Q9NRX2 25838379
    90410 3j9m:P (3.5) BS01 rna ? GO:0003735 ... A8K9D2 25838379
    90411 3j9m:P (3.5) BS02 rna ? GO:0003735 ... A8K9D2 25838379
    90412 3j9m:Q (3.5) BS01 rna ? GO:0003735 ... P49406 25838379
    90413 3j9m:R (3.5) BS01 rna ? GO:0003723 ... Q9BYC9 25838379
    90414 3j9m:S (3.5) BS01 rna ? GO:0003723 ... Q7Z2W9 25838379
    90415 3j9m:T (3.5) BS01 rna ? GO:0003735 ... E7ESL0 25838379
    90416 3j9m:U (3.5) BS01 rna ? GO:0001650 ... Q16540 25838379
    90417 3j9m:V (3.5) BS01 rna ? GO:0003723 ... Q96A35 25838379
    90418 3j9m:W (3.5) BS01 rna ? GO:0003723 ... Q9P0M9 25838379
    90419 3j9m:Y (3.5) BS01 rna ? GO:0003674 ... Q9HD33 25838379
    90420 3j9m:Z (3.5) BS01 rna ? GO:0003735 ... Q8TCC3 25838379
    90421 3j9m:a (3.5) BS01 rna ? GO:0003723 ... Q9Y6G3 25838379
    90422 3j9m:c (3.5) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 25838379
    90423 3j9m:f (3.5) BS01 rna ? GO:0005515 ... Q96GC5 25838379
    90424 3j9m:f (3.5) BS02 rna ? GO:0005515 ... Q96GC5 25838379
    90425 3j9m:g (3.5) BS01 rna ? GO:0003735 ... Q13405 25838379
    90426 3j9m:i (3.5) BS01 rna ? GO:0003735 ... Q4U2R6 25838379
    90427 3j9m:j (3.5) BS01 rna ? GO:0003735 ... A8K7J6 25838379
    90428 3j9m:o (3.5) BS01 rna ? GO:0003735 ... Q9BQC6 25838379
    90429 3j9m:r (3.5) BS01 rna ? GO:0003735 ... Q9NVS2 25838379
    90430 3j9m:s (3.5) BS01 rna ? GO:0003723 ... Q9NP92 25838379
    90431 3j9w:AC (3.9) BS01 rna ? GO:0003676 ... P21465 25903689
    90432 3j9w:AD (3.9) BS01 rna ? GO:0003723 ... P21466 25903689
    90433 3j9w:AE (3.9) BS01 rna ? GO:0003723 ... P21467 25903689
    90434 3j9w:AF (3.9) BS01 rna ? GO:0003735 ... P21468 25903689
    90435 3j9w:AG (3.9) BS01 rna ? GO:0000028 ... P21469 25903689
    90436 3j9w:AH (3.9) BS01 rna ? GO:0003735 ... P12879 25903689
    90437 3j9w:AI (3.9) BS01 rna ? GO:0003723 ... P21470 25903689
    90438 3j9w:AJ (3.9) BS01 rna ? GO:0000049 ... P21471 25903689
    90439 3j9w:AK (3.9) BS01 rna ? GO:0003735 ... P04969 25903689
    90440 3j9w:AL (3.9) BS01 rna ? GO:0000049 ... P21472 25903689
    90441 3j9w:AM (3.9) BS01 rna ? GO:0000049 ... P20282 25903689
    90442 3j9w:AN (3.9) BS01 rna ? GO:0003735 ... P12878 25903689
    90443 3j9w:AO (3.9) BS01 rna ? GO:0003735 ... P21473 25903689
    90444 3j9w:AP (3.9) BS01 rna ? GO:0003735 ... P21474 25903689
    90445 3j9w:AQ (3.9) BS01 rna ? GO:0003735 ... P12874 25903689
    90446 3j9w:AS (3.9) BS01 rna ? GO:0000028 ... P21476 25903689
    90447 3j9w:AT (3.9) BS01 rna ? GO:0003723 ... P21477 25903689
    90448 3j9w:B0 (3.9) BS01 rna ? GO:0003735 ... P37807 25903689
    90449 3j9w:B1 (3.9) BS01 rna ? GO:0003735 ... P12873 25903689
    90450 3j9w:B2 (3.9) BS01 rna ? GO:0003735 ... P19947 25903689
    90451 3j9w:B2 (3.9) BS02 rna ? GO:0003735 ... P19947 25903689
    90452 3j9w:B3 (3.9) BS01 rna ? GO:0003735 ... Q03223 25903689
    90453 3j9w:B4 (3.9) BS01 rna ? GO:0003735 ... O34687 25903689
    90454 3j9w:B5 (3.9) BS01 rna ? GO:0003735 ... P56849 25903689
    90455 3j9w:B6 (3.9) BS01 rna ? GO:0003735 ... P05647 25903689
    90456 3j9w:B7 (3.9) BS01 rna ? GO:0003735 ... P55874 25903689
    90457 3j9w:B8 (3.9) BS01 rna ? GO:0003735 ... P20278 25903689
    90458 3j9w:BD (3.9) BS01 rna ? GO:0002181 ... P42919 25903689
    90459 3j9w:BD (3.9) BS02 rna ? GO:0002181 ... P42919 25903689
    90460 3j9w:BE (3.9) BS01 rna ? GO:0003735 ... P42920 25903689
    90461 3j9w:BF (3.9) BS01 rna ? GO:0003735 ... P42921 25903689
    90462 3j9w:BG (3.9) BS01 rna ? GO:0000049 ... P12877 25903689
    90463 3j9w:BG (3.9) BS02 rna ? GO:0000049 ... P12877 25903689
    90464 3j9w:BG (3.9) BS03 rna ? GO:0000049 ... P12877 25903689
    90465 3j9w:BH (3.9) BS01 rna ? GO:0002181 ... P46898 25903689
    90466 3j9w:BJ (3.9) BS01 rna ? GO:0003735 ... P42923 25903689
    90467 3j9w:BK (3.9) BS01 rna ? GO:0003735 ... Q06796 25903689
    90468 3j9w:BM (3.9) BS01 rna ? GO:0003729 ... P70974 25903689
    90469 3j9w:BN (3.9) BS01 rna ? GO:0003735 ... P12875 25903689
    90470 3j9w:BN (3.9) BS02 rna ? GO:0003735 ... P12875 25903689
    90471 3j9w:BO (3.9) BS01 rna ? GO:0003735 ... P19946 25903689
    90472 3j9w:BP (3.9) BS01 rna ? GO:0000049 ... P14577 25903689
    90473 3j9w:BP (3.9) BS02 rna ? GO:0000049 ... P14577 25903689
    90474 3j9w:BQ (3.9) BS01 rna ? GO:0003735 ... P20277 25903689
    90475 3j9w:BR (3.9) BS01 rna ? GO:0003735 ... P46899 25903689
    90476 3j9w:BR (3.9) BS02 rna ? GO:0003735 ... P46899 25903689
    90477 3j9w:BS (3.9) BS01 rna ? GO:0003735 ... O31742 25903689
    90478 3j9w:BS (3.9) BS02 rna ? GO:0003735 ... O31742 25903689
    90479 3j9w:BT (3.9) BS01 rna ? GO:0000027 ... P55873 25903689
    90480 3j9w:BU (3.9) BS01 rna ? GO:0003723 ... P26908 25903689
    90481 3j9w:BV (3.9) BS01 rna ? GO:0003735 ... P42060 25903689
    90482 3j9w:BW (3.9) BS01 rna ? GO:0000027 ... P42924 25903689
    90483 3j9w:BX (3.9) BS01 rna ? GO:0003677 ... P0CI78 25903689
    90484 3j9w:BZ (3.9) BS01 rna ? GO:0003735 ... P05657 25903689
    90485 3j9w:BZ (3.9) BS02 rna ? GO:0003735 ... P05657 25903689
    90486 3j9x:1 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90487 3j9x:1 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90488 3j9x:2 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90489 3j9x:2 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90490 3j9x:3 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90491 3j9x:3 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90492 3j9x:4 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90493 3j9x:4 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90494 3j9x:5 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90495 3j9x:5 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90496 3j9x:6 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90497 3j9x:6 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90498 3j9x:A (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90499 3j9x:A (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90500 3j9x:B (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90501 3j9x:B (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90502 3j9x:C (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90503 3j9x:C (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90504 3j9x:D (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90505 3j9x:D (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90506 3j9x:E (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90507 3j9x:E (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90508 3j9x:F (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90509 3j9x:F (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90510 3j9x:G (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90511 3j9x:G (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90512 3j9x:H (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90513 3j9x:H (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90514 3j9x:I (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90515 3j9x:I (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90516 3j9x:J (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90517 3j9x:J (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90518 3j9x:K (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90519 3j9x:K (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90520 3j9x:L (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90521 3j9x:L (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90522 3j9x:M (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90523 3j9x:M (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90524 3j9x:N (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90525 3j9x:N (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90526 3j9x:O (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90527 3j9x:O (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90528 3j9x:P (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90529 3j9x:P (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90530 3j9x:Q (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90531 3j9x:Q (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90532 3j9x:R (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90533 3j9x:R (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90534 3j9x:S (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90535 3j9x:S (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90536 3j9x:T (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90537 3j9x:T (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90538 3j9x:U (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90539 3j9x:U (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90540 3j9x:V (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90541 3j9x:V (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90542 3j9x:W (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90543 3j9x:W (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90544 3j9x:X (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90545 3j9x:X (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90546 3j9x:Y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90547 3j9x:Y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90548 3j9x:Z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90549 3j9x:Z (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90550 3j9x:a (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90551 3j9x:a (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90552 3j9x:b (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90553 3j9x:b (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90554 3j9x:c (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90555 3j9x:c (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90556 3j9x:d (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90557 3j9x:d (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90558 3j9x:e (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90559 3j9x:e (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90560 3j9x:f (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90561 3j9x:f (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90562 3j9x:g (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90563 3j9x:g (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90564 3j9x:h (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90565 3j9x:h (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90566 3j9x:i (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90567 3j9x:i (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90568 3j9x:j (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90569 3j9x:j (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90570 3j9x:k (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90571 3j9x:k (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90572 3j9x:l (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90573 3j9x:l (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90574 3j9x:m (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90575 3j9x:m (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90576 3j9x:n (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90577 3j9x:n (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90578 3j9x:o (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90579 3j9x:o (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90580 3j9x:p (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90581 3j9x:p (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90582 3j9x:q (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90583 3j9x:q (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90584 3j9x:r (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90585 3j9x:r (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90586 3j9x:s (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90587 3j9x:s (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90588 3j9x:t (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90589 3j9x:t (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90590 3j9x:u (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90591 3j9x:u (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90592 3j9x:v (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90593 3j9x:v (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90594 3j9x:w (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90595 3j9x:w (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90596 3j9x:x (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90597 3j9x:x (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90598 3j9x:y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90599 3j9x:y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    90600 3j9x:z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417