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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    90001 3j7r:SW (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90002 3j7r:SX (3.9) BS01 rna ? GO:0002181 ... Q6SA96 24930395
    90003 3j7r:SY (3.9) BS01 rna ? GO:0003735 ... A0A4X1SJK8 24930395
    90004 3j7r:Sa (3.9) BS01 rna ? GO:0002181 ... P49171 24930395
    90005 3j7r:Sa (3.9) BS02 ZN ? GO:0002181 ... P49171 24930395
    90006 3j7r:Sb (3.9) BS01 rna ? GO:0003735 ... A0A4X1W2B6 24930395
    90007 3j7r:Sc (3.9) BS01 rna ? GO:0000028 ... Q6QAT1 24930395
    90008 3j7r:Sd (3.9) BS01 rna ? GO:0002181 ... Q6QAP6 24930395
    90009 3j7r:Se (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90010 3j7r:Sf (3.9) BS01 rna ? GO:0003735 ... A0A4X1W6H9 24930395
    90011 3j7r:Sg (3.9) BS01 rna ? GO:0001891 ... P63246 24930395
    90012 3j7r:T (3.9) BS01 rna ? GO:0003735 ... P49666 24930395
    90013 3j7r:T (3.9) BS02 rna ? GO:0003735 ... P49666 24930395
    90014 3j7r:U (3.9) BS01 rna ? GO:0002181 ... P67985 24930395
    90015 3j7r:V (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90016 3j7r:V (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    90017 3j7r:W (3.9) BS01 rna ? GO:0005737 ... A0A4X1SH42 24930395
    90018 3j7r:X (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90019 3j7r:X (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    90020 3j7r:Y (3.9) BS01 rna ? GO:0003723 ... A0A4X1V977 24930395
    90021 3j7r:Y (3.9) BS02 rna ? GO:0003723 ... A0A4X1V977 24930395
    90022 3j7r:Z (3.9) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    90023 3j7r:a (3.9) BS01 rna ? GO:0003735 ... A0A4X1SN08 24930395
    90024 3j7r:b (3.9) BS01 rna ? GO:0002181 ... Q95281 24930395
    90025 3j7r:c (3.9) BS01 rna ? GO:0003723 ... A0A4X1TXJ8 24930395
    90026 3j7r:d (3.9) BS01 rna ? GO:0002181 ... P62901 24930395
    90027 3j7r:e (3.9) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    90028 3j7r:f (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90029 3j7r:g (3.9) BS01 rna ? GO:0003735 ... Q29223 24930395
    90030 3j7r:h (3.9) BS01 rna ? GO:0000463 ... Q29361 24930395
    90031 3j7r:h (3.9) BS02 rna ? GO:0000463 ... Q29361 24930395
    90032 3j7r:i (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90033 3j7r:j (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90034 3j7r:j (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    90035 3j7r:j (3.9) BS03 ZN N/A GO:0003735 ... N/A 24930395
    90036 3j7r:k (3.9) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    90037 3j7r:l (3.9) BS01 rna ? GO:0002181 ... K7GP63 24930395
    90038 3j7r:l (3.9) BS02 rna ? GO:0002181 ... K7GP63 24930395
    90039 3j7r:m (3.9) BS01 rna ? GO:0003735 ... P63053 24930395
    90040 3j7r:m (3.9) BS02 ZN ? GO:0003735 ... P63053 24930395
    90041 3j7r:o (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90042 3j7r:o (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    90043 3j7r:o (3.9) BS03 ZN N/A GO:0003735 ... N/A 24930395
    90044 3j7r:p (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90045 3j7r:p (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    90046 3j7r:r (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    90047 3j7r:z (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    90048 3j7r:z (3.9) BS02 rna N/A GO:0003723 ... N/A 24930395
    90049 3j7t:A (3.4) BS01 CA 7.2.2.10 GO:0000166 ... P04191 25730881
    90050 3j7t:A (3.4) BS02 CA 7.2.2.10 GO:0000166 ... P04191 25730881
    90051 3j7y:0 (3.4) BS01 rna ? GO:0003723 ... Q9BYC8 25278503
    90052 3j7y:0 (3.4) BS02 ZN ? GO:0003723 ... Q9BYC8 25278503
    90053 3j7y:1 (3.4) BS01 rna ? GO:0003735 ... O75394 25278503
    90054 3j7y:2 (3.4) BS01 rna ? GO:0003735 ... Q9BQ48 25278503
    90055 3j7y:3 (3.4) BS01 rna ? GO:0003735 ... Q9NZE8 25278503
    90056 3j7y:4 (3.4) BS01 rna ? GO:0003735 ... Q9P0J6 25278503
    90057 3j7y:4 (3.4) BS02 ZN ? GO:0003735 ... Q9P0J6 25278503
    90058 3j7y:5 (3.4) BS01 rna ? GO:0003723 ... Q9BZE1 25278503
    90059 3j7y:6 (3.4) BS01 rna ? GO:0005515 ... Q96DV4 25278503
    90060 3j7y:6 (3.4) BS02 rna ? GO:0005515 ... Q96DV4 25278503
    90061 3j7y:8 (3.4) BS01 rna ? GO:0003723 ... Q9NQ50 25278503
    90062 3j7y:9 (3.4) BS01 rna ? GO:0003723 ... Q8IXM3 25278503
    90063 3j7y:D (3.4) BS01 rna ? GO:0003723 ... Q5T653 25278503
    90064 3j7y:E (3.4) BS01 rna ? GO:0003723 ... P09001 25278503
    90065 3j7y:F (3.4) BS01 rna ? GO:0003723 ... Q9BYD3 25278503
    90066 3j7y:H (3.4) BS01 rna ? GO:0003723 ... Q9BYD2 25278503
    90067 3j7y:I (3.4) BS01 rna ? GO:0003723 ... Q7Z7H8 25278503
    90068 3j7y:J (3.4) BS01 rna ? GO:0003723 ... Q9Y3B7 25278503
    90069 3j7y:K (3.4) BS01 rna ? GO:0003723 ... Q9BYD1 25278503
    90070 3j7y:L (3.4) BS01 rna ? GO:0003723 ... Q6P1L8 25278503
    90071 3j7y:M (3.4) BS01 rna ? GO:0003723 ... Q9P015 25278503
    90072 3j7y:N (3.4) BS01 rna ? GO:0003735 ... Q9NX20 25278503
    90073 3j7y:O (3.4) BS01 rna ? GO:0003735 ... Q9NRX2 25278503
    90074 3j7y:P (3.4) BS01 rna ? GO:0003723 ... Q9H0U6 25278503
    90075 3j7y:P (3.4) BS02 rna ? GO:0003723 ... Q9H0U6 25278503
    90076 3j7y:Q (3.4) BS01 rna ? GO:0003735 ... P49406 25278503
    90077 3j7y:R (3.4) BS01 rna ? GO:0003723 ... Q9BYC9 25278503
    90078 3j7y:S (3.4) BS01 rna ? GO:0003723 ... Q7Z2W9 25278503
    90079 3j7y:T (3.4) BS01 rna ? GO:0003735 ... Q9NWU5 25278503
    90080 3j7y:U (3.4) BS01 rna ? GO:0001650 ... Q16540 25278503
    90081 3j7y:V (3.4) BS01 rna ? GO:0003723 ... Q96A35 25278503
    90082 3j7y:W (3.4) BS01 rna ? GO:0003723 ... Q9P0M9 25278503
    90083 3j7y:X (3.4) BS01 rna ? GO:0003723 ... Q13084 25278503
    90084 3j7y:Y (3.4) BS01 rna ? GO:0003674 ... Q9HD33 25278503
    90085 3j7y:Z (3.4) BS01 rna ? GO:0003735 ... Q8TCC3 25278503
    90086 3j7y:a (3.4) BS01 rna ? GO:0003723 ... Q9Y6G3 25278503
    90087 3j7y:c (3.4) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 25278503
    90088 3j7y:e (3.4) BS01 rna ? GO:0003674 ... Q9H2W6 25278503
    90089 3j7y:f (3.4) BS01 rna ? GO:0005515 ... Q96GC5 25278503
    90090 3j7y:f (3.4) BS02 rna ? GO:0005515 ... Q96GC5 25278503
    90091 3j7y:g (3.4) BS01 rna ? GO:0003735 ... Q13405 25278503
    90092 3j7y:i (3.4) BS01 rna ? GO:0003735 ... Q4U2R6 25278503
    90093 3j7y:j (3.4) BS01 rna ? GO:0003735 ... Q86TS9 25278503
    90094 3j7y:o (3.4) BS01 rna ? GO:0003735 ... Q9BQC6 25278503
    90095 3j7y:r (3.4) BS01 rna ? GO:0003735 ... Q9NVS2 25278503
    90096 3j7y:s (3.4) BS01 rna ? GO:0003723 ... Q9NP92 25278503
    90097 3j7z:0 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 25306253
    90098 3j7z:1 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 25306253
    90099 3j7z:2 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 25306253
    90100 3j7z:3 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 25306253
    90101 3j7z:4 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 25306253
    90102 3j7z:5 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 25306253
    90103 3j7z:C (3.9) BS01 rna ? GO:0000027 ... P60422 25306253
    90104 3j7z:D (3.9) BS01 rna ? GO:0000027 ... P60438 25306253
    90105 3j7z:E (3.9) BS01 rna ? GO:0001070 ... P60723 25306253
    90106 3j7z:F (3.9) BS01 rna ? GO:0000027 ... P62399 25306253
    90107 3j7z:F (3.9) BS02 rna ? GO:0000027 ... P62399 25306253
    90108 3j7z:G (3.9) BS01 rna ? GO:0000027 ... P0AG55 25306253
    90109 3j7z:H (3.9) BS01 rna ? GO:0002181 ... P0A7R1 25306253
    90110 3j7z:I (3.9) BS01 rna ? GO:0000027 ... P0A7J7 25306253
    90111 3j7z:J (3.9) BS01 rna ? GO:0002181 ... P0AA10 25306253
    90112 3j7z:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 25306253
    90113 3j7z:L (3.9) BS01 rna ? GO:0002181 ... P02413 25306253
    90114 3j7z:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 25306253
    90115 3j7z:M (3.9) BS02 rna ? GO:0000027 ... P0ADY7 25306253
    90116 3j7z:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 25306253
    90117 3j7z:O (3.9) BS01 rna ? GO:0002181 ... P0C018 25306253
    90118 3j7z:O (3.9) BS02 rna ? GO:0002181 ... P0C018 25306253
    90119 3j7z:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 25306253
    90120 3j7z:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 25306253
    90121 3j7z:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 25306253
    90122 3j7z:S (3.9) BS01 rna ? GO:0002181 ... P61175 25306253
    90123 3j7z:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 25306253
    90124 3j7z:U (3.9) BS01 rna ? GO:0000027 ... P60624 25306253
    90125 3j7z:V (3.9) BS01 rna ? GO:0000027 ... P68919 25306253
    90126 3j7z:V (3.9) BS02 rna ? GO:0000027 ... P68919 25306253
    90127 3j7z:W (3.9) BS01 rna ? GO:0000027 ... P0A7L8 25306253
    90128 3j7z:X (3.9) BS01 rna ? GO:0000027 ... P0A7M2 25306253
    90129 3j7z:Y (3.9) BS01 rna ? GO:0000027 ... P0A7M6 25306253
    90130 3j7z:Z (3.9) BS01 rna ? GO:0000027 ... P0AG51 25306253
    90131 3j7z:Z (3.9) BS02 rna ? GO:0000027 ... P0AG51 25306253
    90132 3j80:A (3.75) BS01 rna ? GO:0000028 ... Q6CN12 25417110
    90133 3j80:B (3.75) BS01 rna ? GO:0003735 ... Q6CWD0 25417110
    90134 3j80:C (3.75) BS01 rna ? GO:0003723 ... Q6CKL3 25417110
    90135 3j80:D (3.75) BS01 rna ? GO:0003723 ... Q6CRK7 25417110
    90136 3j80:E (3.75) BS01 rna ? GO:0003723 ... Q6CWJ2 25417110
    90137 3j80:F (3.75) BS01 rna ? GO:0000028 ... Q6CRA3 25417110
    90138 3j80:G (3.75) BS01 rna ? GO:0003735 ... Q6CM04 25417110
    90139 3j80:H (3.75) BS01 rna ? GO:0003735 ... Q6CTD6 25417110
    90140 3j80:I (3.75) BS01 rna ? GO:0000462 ... Q6CMG3 25417110
    90141 3j80:J (3.75) BS01 rna ? GO:0003723 ... Q6CM18 25417110
    90142 3j80:K (3.75) BS01 rna ? GO:0003723 ... Q6CVZ5 25417110
    90143 3j80:L (3.75) BS01 rna ? GO:0003735 ... Q6CX80 25417110
    90144 3j80:M (3.75) BS01 rna ? GO:0003735 ... Q6CLU4 25417110
    90145 3j80:N (3.75) BS01 rna ? GO:0003735 ... Q6CJK0 25417110
    90146 3j80:O (3.75) BS01 rna ? GO:0000028 ... P27069 25417110
    90147 3j80:P (3.75) BS01 rna ? GO:0000028 ... Q6CKV4 25417110
    90148 3j80:Q (3.75) BS01 rna ? GO:0000462 ... Q875N2 25417110
    90149 3j80:R (3.75) BS01 rna ? GO:0003735 ... Q6CWU3 25417110
    90150 3j80:S (3.75) BS01 rna ? GO:0003676 ... Q6CWT9 25417110
    90151 3j80:T (3.75) BS01 rna ? GO:0000028 ... Q6CXM0 25417110
    90152 3j80:U (3.75) BS01 rna ? GO:0003735 ... Q6CIM1 25417110
    90153 3j80:V (3.75) BS01 rna ? GO:0000447 ... Q6CXT6 25417110
    90154 3j80:W (3.75) BS01 rna ? GO:0003735 ... Q6CW21 25417110
    90155 3j80:X (3.75) BS01 rna ? GO:0003735 ... F2Z602 25417110
    90156 3j80:Y (3.75) BS01 rna ? GO:0003735 ... Q6CU44 25417110
    90157 3j80:Z (3.75) BS01 rna ? GO:0003735 ... Q6CW78 25417110
    90158 3j80:a (3.75) BS01 rna ? GO:0003729 ... Q6CS01 25417110
    90159 3j80:a (3.75) BS02 ZN ? GO:0003729 ... Q6CS01 25417110
    90160 3j80:b (3.75) BS01 rna ? GO:0000028 ... Q6CNL2 25417110
    90161 3j80:b (3.75) BS02 ZN ? GO:0000028 ... Q6CNL2 25417110
    90162 3j80:c (3.75) BS01 rna ? GO:0000028 ... P33285 25417110
    90163 3j80:d (3.75) BS01 rna ? GO:0003735 ... Q6CPG3 25417110
    90164 3j80:e (3.75) BS01 rna ? GO:0003735 ... Q6CUH5 25417110
    90165 3j80:f (3.75) BS01 rna ? GO:0003735 ... P69061 25417110
    90166 3j80:g (3.75) BS01 rna ? GO:0001934 ... Q6CNI7 25417110
    90167 3j80:i (3.75) BS01 rna ? GO:0001677 ... P38912 25417110
    90168 3j80:j (3.75) BS01 rna ? GO:0001731 ... P32911 25417110
    90169 3j81:A (4.0) BS01 rna ? GO:0000028 ... Q6CN12 25417110
    90170 3j81:B (4.0) BS01 rna ? GO:0003735 ... Q6CWD0 25417110
    90171 3j81:C (4.0) BS01 rna ? GO:0003723 ... Q6CKL3 25417110
    90172 3j81:C (4.0) BS02 rna ? GO:0003723 ... Q6CKL3 25417110
    90173 3j81:D (4.0) BS01 rna ? GO:0003723 ... Q6CRK7 25417110
    90174 3j81:D (4.0) BS02 rna ? GO:0003723 ... Q6CRK7 25417110
    90175 3j81:E (4.0) BS01 rna ? GO:0003723 ... Q6CWJ2 25417110
    90176 3j81:F (4.0) BS01 rna ? GO:0000028 ... Q6CRA3 25417110
    90177 3j81:F (4.0) BS02 rna ? GO:0000028 ... Q6CRA3 25417110
    90178 3j81:G (4.0) BS01 rna ? GO:0003735 ... Q6CM04 25417110
    90179 3j81:H (4.0) BS01 rna ? GO:0003735 ... Q6CTD6 25417110
    90180 3j81:I (4.0) BS01 rna ? GO:0000462 ... Q6CMG3 25417110
    90181 3j81:J (4.0) BS01 rna ? GO:0003723 ... Q6CM18 25417110
    90182 3j81:K (4.0) BS01 rna ? GO:0003723 ... Q6CVZ5 25417110
    90183 3j81:L (4.0) BS01 rna ? GO:0003735 ... Q6CX80 25417110
    90184 3j81:M (4.0) BS01 rna ? GO:0003735 ... Q6CLU4 25417110
    90185 3j81:N (4.0) BS01 rna ? GO:0003735 ... Q6CJK0 25417110
    90186 3j81:O (4.0) BS01 rna ? GO:0000028 ... P27069 25417110
    90187 3j81:P (4.0) BS01 rna ? GO:0000028 ... Q6CKV4 25417110
    90188 3j81:Q (4.0) BS01 rna ? GO:0000462 ... Q875N2 25417110
    90189 3j81:R (4.0) BS01 rna ? GO:0003735 ... Q6CWU3 25417110
    90190 3j81:S (4.0) BS01 rna ? GO:0003676 ... Q6CWT9 25417110
    90191 3j81:T (4.0) BS01 rna ? GO:0000028 ... Q6CXM0 25417110
    90192 3j81:U (4.0) BS01 rna ? GO:0003735 ... Q6CIM1 25417110
    90193 3j81:W (4.0) BS01 rna ? GO:0003735 ... Q6CW21 25417110
    90194 3j81:X (4.0) BS01 rna ? GO:0003735 ... F2Z602 25417110
    90195 3j81:Y (4.0) BS01 rna ? GO:0003735 ... Q6CU44 25417110
    90196 3j81:Z (4.0) BS01 rna ? GO:0003735 ... Q6CW78 25417110
    90197 3j81:a (4.0) BS01 rna ? GO:0003729 ... Q6CS01 25417110
    90198 3j81:a (4.0) BS02 rna ? GO:0003729 ... Q6CS01 25417110
    90199 3j81:a (4.0) BS03 ZN ? GO:0003729 ... Q6CS01 25417110
    90200 3j81:b (4.0) BS01 rna ? GO:0000028 ... Q6CNL2 25417110
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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