Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89801 3j7p:E (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89802 3j7p:G (3.5) BS01 rna N/A GO:0042254 ... N/A 24930395
    89803 3j7p:G (3.5) BS02 rna N/A GO:0042254 ... N/A 24930395
    89804 3j7p:H (3.5) BS01 rna ? GO:0003735 ... I3LP78 24930395
    89805 3j7p:I (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89806 3j7p:I (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    89807 3j7p:J (3.5) BS01 rna ? GO:0003723 ... Q29205 24930395
    89808 3j7p:J (3.5) BS02 rna ? GO:0003723 ... Q29205 24930395
    89809 3j7p:K (3.5) BS01 rna ? GO:0003735 ... Q6QAS5 24930395
    89810 3j7p:L (3.5) BS01 rna ? GO:0003735 ... I3LSD3 24930395
    89811 3j7p:L (3.5) BS02 rna ? GO:0003735 ... I3LSD3 24930395
    89812 3j7p:M (3.5) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    89813 3j7p:N (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89814 3j7p:N (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    89815 3j7p:O (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89816 3j7p:P (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89817 3j7p:P (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    89818 3j7p:Q (3.5) BS01 rna ? GO:0002181 ... Q95342 24930395
    89819 3j7p:R (3.5) BS01 rna ? GO:0003723 ... F2Z546 24930395
    89820 3j7p:R (3.5) BS02 rna ? GO:0003723 ... F2Z546 24930395
    89821 3j7p:S (3.5) BS01 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    89822 3j7p:S (3.5) BS02 rna ? GO:0003735 ... A0A4X1UAP0 24930395
    89823 3j7p:SA (3.5) BS01 rna ? GO:0000028 ... Q4GWZ2 24930395
    89824 3j7p:SB (3.5) BS01 rna ? GO:0003735 ... B6V8C8 24930395
    89825 3j7p:SB (3.5) BS02 rna ? GO:0003735 ... B6V8C8 24930395
    89826 3j7p:SC (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    89827 3j7p:SD (3.5) BS01 rna 4.2.99.18 GO:0003677 ... Q0Z8U2 24930395
    89828 3j7p:SE (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    89829 3j7p:SF (3.5) BS01 rna ? GO:0003723 ... F2Z5E6 24930395
    89830 3j7p:SG (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89831 3j7p:SH (3.5) BS01 rna ? GO:0003735 ... I3L5B2 24930395
    89832 3j7p:SI (3.5) BS01 rna ? GO:0000462 ... F2Z5F5 24930395
    89833 3j7p:SI (3.5) BS02 rna ? GO:0000462 ... F2Z5F5 24930395
    89834 3j7p:SJ (3.5) BS01 rna N/A GO:0003723 ... N/A 24930395
    89835 3j7p:SL (3.5) BS01 rna ? GO:0003735 ... F2Z4Y8 24930395
    89836 3j7p:SL (3.5) BS02 MG ? GO:0003735 ... F2Z4Y8 24930395
    89837 3j7p:SM (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89838 3j7p:SN (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89839 3j7p:SO (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89840 3j7p:SP (3.5) BS01 rna ? GO:0000028 ... P62844 24930395
    89841 3j7p:SQ (3.5) BS01 rna ? GO:0000462 ... Q29201 24930395
    89842 3j7p:SR (3.5) BS01 rna ? GO:0003735 ... Q6QAP7 24930395
    89843 3j7p:SS (3.5) BS01 rna ? GO:0003676 ... P62272 24930395
    89844 3j7p:ST (3.5) BS01 rna ? GO:0003735 ... F1RGG1 24930395
    89845 3j7p:SU (3.5) BS01 rna ? GO:0003723 ... A1XQU9 24930395
    89846 3j7p:SW (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89847 3j7p:SX (3.5) BS01 rna ? GO:0002181 ... Q6SA96 24930395
    89848 3j7p:SY (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89849 3j7p:Sa (3.5) BS01 rna ? GO:0002181 ... P49171 24930395
    89850 3j7p:Sa (3.5) BS02 ZN ? GO:0002181 ... P49171 24930395
    89851 3j7p:Sb (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89852 3j7p:Sc (3.5) BS01 rna ? GO:0000028 ... Q6QAT1 24930395
    89853 3j7p:Sd (3.5) BS01 rna ? GO:0002181 ... Q6QAP6 24930395
    89854 3j7p:Se (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89855 3j7p:Sf (3.5) BS01 rna ? GO:0003735 ... F2Z5U0 24930395
    89856 3j7p:Sg (3.5) BS01 rna ? GO:0001891 ... P63246 24930395
    89857 3j7p:T (3.5) BS01 rna ? GO:0003735 ... P49666 24930395
    89858 3j7p:T (3.5) BS02 rna ? GO:0003735 ... P49666 24930395
    89859 3j7p:U (3.5) BS01 rna ? GO:0002181 ... P67985 24930395
    89860 3j7p:V (3.5) BS01 rna ? GO:0000122 ... P62831 24930395
    89861 3j7p:V (3.5) BS02 rna ? GO:0000122 ... P62831 24930395
    89862 3j7p:X (3.5) BS01 rna ? GO:0003735 ... F2Z522 24930395
    89863 3j7p:X (3.5) BS02 rna ? GO:0003735 ... F2Z522 24930395
    89864 3j7p:Y (3.5) BS01 rna ? GO:0002181 ... I3L7Y1 24930395
    89865 3j7p:Y (3.5) BS02 rna ? GO:0002181 ... I3L7Y1 24930395
    89866 3j7p:Z (3.5) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    89867 3j7p:a (3.5) BS01 rna ? GO:0003735 ... F1RGC0 24930395
    89868 3j7p:b (3.5) BS01 rna ? GO:0002181 ... Q95281 24930395
    89869 3j7p:c (3.5) BS01 rna ? GO:0003723 ... F2Z554 24930395
    89870 3j7p:d (3.5) BS01 rna ? GO:0002181 ... P62901 24930395
    89871 3j7p:e (3.5) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    89872 3j7p:f (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89873 3j7p:g (3.5) BS01 rna ? GO:0003735 ... Q29223 24930395
    89874 3j7p:h (3.5) BS01 rna ? GO:0000463 ... Q29361 24930395
    89875 3j7p:h (3.5) BS02 rna ? GO:0000463 ... Q29361 24930395
    89876 3j7p:i (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89877 3j7p:j (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89878 3j7p:j (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    89879 3j7p:j (3.5) BS03 ZN N/A GO:0003735 ... N/A 24930395
    89880 3j7p:k (3.5) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    89881 3j7p:l (3.5) BS01 rna ? GO:0002181 ... K7GP63 24930395
    89882 3j7p:l (3.5) BS02 rna ? GO:0002181 ... K7GP63 24930395
    89883 3j7p:m (3.5) BS01 rna ? GO:0003735 ... P63053 24930395
    89884 3j7p:m (3.5) BS02 ZN ? GO:0003735 ... P63053 24930395
    89885 3j7p:o (3.5) BS01 rna ? GO:0003674 ... P83884 24930395
    89886 3j7p:o (3.5) BS02 ZN ? GO:0003674 ... P83884 24930395
    89887 3j7p:p (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89888 3j7p:p (3.5) BS02 rna N/A GO:0003735 ... N/A 24930395
    89889 3j7p:r (3.5) BS01 rna N/A GO:0003735 ... N/A 24930395
    89890 3j7q:1 (3.4) BS01 rna N/A GO:0015031 ... N/A 24930395
    89891 3j7q:A (3.4) BS01 rna N/A GO:0003723 ... N/A 24930395
    89892 3j7q:B (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89893 3j7q:C (3.4) BS01 rna ? GO:0003735 ... F1SJJ5 24930395
    89894 3j7q:C (3.4) BS02 rna ? GO:0003735 ... F1SJJ5 24930395
    89895 3j7q:D (3.4) BS01 rna ? GO:0003735 ... A0A287ASD0 24930395
    89896 3j7q:D (3.4) BS02 rna ? GO:0003735 ... A0A287ASD0 24930395
    89897 3j7q:E (3.4) BS01 rna ? GO:0003735 ... Q2YGT9 24930395
    89898 3j7q:G (3.4) BS01 rna ? GO:0042254 ... A0A4X1W808 24930395
    89899 3j7q:G (3.4) BS02 rna ? GO:0042254 ... A0A4X1W808 24930395
    89900 3j7q:H (3.4) BS01 rna ? GO:0003735 ... I3LP78 24930395
    89901 3j7q:I (3.4) BS01 rna ? GO:0000027 ... Q29195 24930395
    89902 3j7q:I (3.4) BS02 rna ? GO:0000027 ... Q29195 24930395
    89903 3j7q:J (3.4) BS01 rna ? GO:0003723 ... Q29205 24930395
    89904 3j7q:J (3.4) BS02 rna ? GO:0003723 ... Q29205 24930395
    89905 3j7q:L (3.4) BS01 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    89906 3j7q:L (3.4) BS02 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    89907 3j7q:M (3.4) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    89908 3j7q:N (3.4) BS01 rna ? GO:0002181 ... A0A286ZL65 24930395
    89909 3j7q:N (3.4) BS02 rna ? GO:0002181 ... A0A286ZL65 24930395
    89910 3j7q:O (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89911 3j7q:P (3.4) BS01 rna ? GO:0003735 ... A0A287B386 24930395
    89912 3j7q:P (3.4) BS02 rna ? GO:0003735 ... A0A287B386 24930395
    89913 3j7q:Q (3.4) BS01 rna ? GO:0003735 ... A0A4X1W0N5 24930395
    89914 3j7q:R (3.4) BS01 rna N/A GO:0003723 ... N/A 24930395
    89915 3j7q:S (3.4) BS01 rna ? GO:0003735 ... A0A287APR1 24930395
    89916 3j7q:S (3.4) BS02 rna ? GO:0003735 ... A0A287APR1 24930395
    89917 3j7q:T (3.4) BS01 rna ? GO:0003735 ... P49666 24930395
    89918 3j7q:T (3.4) BS02 rna ? GO:0003735 ... P49666 24930395
    89919 3j7q:U (3.4) BS01 rna ? GO:0002181 ... P67985 24930395
    89920 3j7q:V (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89921 3j7q:W (3.4) BS01 rna ? GO:0005737 ... A0A4X1SH42 24930395
    89922 3j7q:X (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89923 3j7q:X (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    89924 3j7q:Y (3.4) BS01 rna ? GO:0003723 ... A0A4X1V977 24930395
    89925 3j7q:Y (3.4) BS02 rna ? GO:0003723 ... A0A4X1V977 24930395
    89926 3j7q:Z (3.4) BS01 rna ? GO:0003735 ... A1XQU5 24930395
    89927 3j7q:a (3.4) BS01 rna ? GO:0003735 ... A0A4X1SN08 24930395
    89928 3j7q:b (3.4) BS01 rna ? GO:0002181 ... Q95281 24930395
    89929 3j7q:c (3.4) BS01 rna ? GO:0003723 ... A0A4X1TXJ8 24930395
    89930 3j7q:d (3.4) BS01 rna ? GO:0002181 ... P62901 24930395
    89931 3j7q:e (3.4) BS01 rna ? GO:0002181 ... Q6QAT0 24930395
    89932 3j7q:f (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89933 3j7q:g (3.4) BS01 rna ? GO:0003735 ... Q29223 24930395
    89934 3j7q:h (3.4) BS01 rna ? GO:0000463 ... Q29361 24930395
    89935 3j7q:h (3.4) BS02 rna ? GO:0000463 ... Q29361 24930395
    89936 3j7q:i (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89937 3j7q:j (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89938 3j7q:j (3.4) BS02 rna N/A GO:0003735 ... N/A 24930395
    89939 3j7q:j (3.4) BS03 ZN N/A GO:0003735 ... N/A 24930395
    89940 3j7q:k (3.4) BS01 rna ? GO:0003735 ... A0A4X1VLH7 24930395
    89941 3j7q:l (3.4) BS01 rna ? GO:0002181 ... K7GP63 24930395
    89942 3j7q:l (3.4) BS02 rna ? GO:0002181 ... K7GP63 24930395
    89943 3j7q:m (3.4) BS01 rna ? GO:0003735 ... P63053 24930395
    89944 3j7q:m (3.4) BS02 ZN ? GO:0003735 ... P63053 24930395
    89945 3j7q:o (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89946 3j7q:o (3.4) BS02 ZN N/A GO:0003735 ... N/A 24930395
    89947 3j7q:p (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89948 3j7q:r (3.4) BS01 rna N/A GO:0003735 ... N/A 24930395
    89949 3j7r:1 (3.9) BS01 rna ? GO:0015031 ... A0A4X1TV07 24930395
    89950 3j7r:A (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    89951 3j7r:A (3.9) BS02 rna N/A GO:0003723 ... N/A 24930395
    89952 3j7r:B (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89953 3j7r:C (3.9) BS01 rna ? GO:0003735 ... F1SJJ5 24930395
    89954 3j7r:C (3.9) BS02 rna ? GO:0003735 ... F1SJJ5 24930395
    89955 3j7r:D (3.9) BS01 rna ? GO:0003735 ... A0A287ASD0 24930395
    89956 3j7r:D (3.9) BS02 rna ? GO:0003735 ... A0A287ASD0 24930395
    89957 3j7r:E (3.9) BS01 rna ? GO:0003735 ... Q2YGT9 24930395
    89958 3j7r:G (3.9) BS01 rna ? GO:0042254 ... A0A4X1W808 24930395
    89959 3j7r:G (3.9) BS02 rna ? GO:0042254 ... A0A4X1W808 24930395
    89960 3j7r:H (3.9) BS01 rna ? GO:0003735 ... I3LP78 24930395
    89961 3j7r:I (3.9) BS01 rna ? GO:0000027 ... Q29195 24930395
    89962 3j7r:I (3.9) BS02 rna ? GO:0000027 ... Q29195 24930395
    89963 3j7r:I (3.9) BS03 rna ? GO:0000027 ... Q29195 24930395
    89964 3j7r:J (3.9) BS01 rna ? GO:0003723 ... Q29205 24930395
    89965 3j7r:J (3.9) BS02 rna ? GO:0003723 ... Q29205 24930395
    89966 3j7r:L (3.9) BS01 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    89967 3j7r:L (3.9) BS02 rna ? GO:0003735 ... A0A4X1TBV3 24930395
    89968 3j7r:M (3.9) BS01 rna ? GO:0003723 ... A1XQU3 24930395
    89969 3j7r:N (3.9) BS01 rna ? GO:0002181 ... A0A286ZL65 24930395
    89970 3j7r:N (3.9) BS02 rna ? GO:0002181 ... A0A286ZL65 24930395
    89971 3j7r:O (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89972 3j7r:P (3.9) BS01 rna ? GO:0003735 ... A0A287B386 24930395
    89973 3j7r:P (3.9) BS02 rna ? GO:0003735 ... A0A287B386 24930395
    89974 3j7r:Q (3.9) BS01 rna ? GO:0003735 ... A0A4X1W0N5 24930395
    89975 3j7r:R (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    89976 3j7r:S (3.9) BS01 rna ? GO:0003735 ... A0A287APR1 24930395
    89977 3j7r:S (3.9) BS02 rna ? GO:0003735 ... A0A287APR1 24930395
    89978 3j7r:SA (3.9) BS01 rna ? GO:0000028 ... Q4GWZ2 24930395
    89979 3j7r:SB (3.9) BS01 rna ? GO:0003735 ... B6V8C8 24930395
    89980 3j7r:SB (3.9) BS02 rna ? GO:0003735 ... B6V8C8 24930395
    89981 3j7r:SC (3.9) BS01 rna ? GO:0003723 ... I3LJ87 24930395
    89982 3j7r:SD (3.9) BS01 rna 4.2.99.18 GO:0003677 ... Q0Z8U2 24930395
    89983 3j7r:SE (3.9) BS01 rna ? GO:0003723 ... A0A287B771 24930395
    89984 3j7r:SF (3.9) BS01 rna ? GO:0003723 ... F2Z5E6 24930395
    89985 3j7r:SG (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89986 3j7r:SH (3.9) BS01 rna ? GO:0001843 ... A0A287A9Y6 24930395
    89987 3j7r:SI (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89988 3j7r:SI (3.9) BS02 rna N/A GO:0003735 ... N/A 24930395
    89989 3j7r:SJ (3.9) BS01 rna N/A GO:0003723 ... N/A 24930395
    89990 3j7r:SL (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89991 3j7r:SL (3.9) BS02 MG N/A GO:0003735 ... N/A 24930395
    89992 3j7r:SM (3.9) BS01 rna ? GO:0003735 ... P46405 24930395
    89993 3j7r:SN (3.9) BS01 rna ? GO:0003735 ... A0A4X1TFR5 24930395
    89994 3j7r:SO (3.9) BS01 rna N/A GO:0003735 ... N/A 24930395
    89995 3j7r:SP (3.9) BS01 rna ? GO:0000028 ... P62844 24930395
    89996 3j7r:SQ (3.9) BS01 rna ? GO:0000462 ... Q29201 24930395
    89997 3j7r:SR (3.9) BS01 rna ? GO:0003735 ... Q6QAP7 24930395
    89998 3j7r:SS (3.9) BS01 rna ? GO:0003676 ... P62272 24930395
    89999 3j7r:ST (3.9) BS01 rna ? GO:0003735 ... A0A4X1SDD8 24930395
    90000 3j7r:SU (3.9) BS01 rna ? GO:0003723 ... A1XQU9 24930395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417