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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89401 3j6y:76 (6.1) BS01 rna ? GO:0002181 ... P05745 24927574
    89402 3j6y:77 (6.1) BS01 rna ? GO:0000448 ... P49166 24927574
    89403 3j6y:77 (6.1) BS02 rna ? GO:0000448 ... P49166 24927574
    89404 3j6y:78 (6.1) BS01 rna ? GO:0002181 ... P49167 24927574
    89405 3j6y:79 (6.1) BS01 rna ? GO:0002181 ... P04650 24927574
    89406 3j6y:79 (6.1) BS02 rna ? GO:0002181 ... P04650 24927574
    89407 3j6y:80 (6.1) BS01 rna ? GO:0000027 ... P0CH08 24927574
    89408 3j6y:82 (6.1) BS01 rna ? GO:0002181 ... P0CX27 24927574
    89409 3j6y:83 (6.1) BS01 rna ? GO:0002181 ... P0CX25 24927574
    89410 3j6y:L1 (6.1) BS01 rna ? GO:0000055 ... P0CX43 24927574
    89411 3j6y:L2 (6.1) BS01 rna ? GO:0002181 ... P0CX45 24927574
    89412 3j6y:L2 (6.1) BS02 rna ? GO:0002181 ... P0CX45 24927574
    89413 3j6y:L3 (6.1) BS01 rna ? GO:0000027 ... P14126 24927574
    89414 3j6y:L4 (6.1) BS01 rna ? GO:0002181 ... P10664 24927574
    89415 3j6y:L4 (6.1) BS02 rna ? GO:0002181 ... P10664 24927574
    89416 3j6y:L5 (6.1) BS01 rna ? GO:0000027 ... P26321 24927574
    89417 3j6y:L5 (6.1) BS02 rna ? GO:0000027 ... P26321 24927574
    89418 3j6y:L6 (6.1) BS01 rna ? GO:0000027 ... Q02326 24927574
    89419 3j6y:L7 (6.1) BS01 rna ? GO:0000463 ... P05737 24927574
    89420 3j6y:L7 (6.1) BS02 rna ? GO:0000463 ... P05737 24927574
    89421 3j6y:L8 (6.1) BS01 rna ? GO:0000470 ... P17076 24927574
    89422 3j6y:L8 (6.1) BS02 rna ? GO:0000470 ... P17076 24927574
    89423 3j6y:L9 (6.1) BS01 rna ? GO:0002181 ... P05738 24927574
    89424 3j6y:RA (6.1) BS01 rna ? GO:0001965 ... P38011 24927574
    89425 3j6y:S0 (6.1) BS01 rna ? GO:0000028 ... P32905 24927574
    89426 3j6y:S1 (6.1) BS01 rna ? GO:0000462 ... P33442 24927574
    89427 3j6y:S2 (6.1) BS01 rna ? GO:0000054 ... P25443 24927574
    89428 3j6y:S3 (6.1) BS01 rna ? GO:0000054 ... P05750 24927574
    89429 3j6y:S4 (6.1) BS01 rna ? GO:0002181 ... P0CX35 24927574
    89430 3j6y:S5 (6.1) BS01 rna ? GO:0000028 ... P26783 24927574
    89431 3j6y:S6 (6.1) BS01 rna ? GO:0000462 ... P0CX37 24927574
    89432 3j6y:S7 (6.1) BS01 rna ? GO:0002181 ... P26786 24927574
    89433 3j6y:S8 (6.1) BS01 rna ? GO:0000462 ... P0CX39 24927574
    89434 3j6y:S8 (6.1) BS02 rna ? GO:0000462 ... P0CX39 24927574
    89435 3j6y:S9 (6.1) BS01 rna ? GO:0000462 ... O13516 24927574
    89436 3j77:10 (6.2) BS01 rna ? GO:0000054 ... Q08745 25043550
    89437 3j77:11 (6.2) BS01 rna ? GO:0000028 ... P0CX47 25043550
    89438 3j77:12 (6.2) BS01 rna ? GO:0000028 ... P48589 25043550
    89439 3j77:13 (6.2) BS01 rna ? GO:0000462 ... P05756 25043550
    89440 3j77:14 (6.2) BS01 rna ? GO:0000028 ... P06367 25043550
    89441 3j77:15 (6.2) BS01 rna ? GO:0000028 ... Q01855 25043550
    89442 3j77:16 (6.2) BS01 rna ? GO:0000462 ... P0CX51 25043550
    89443 3j77:17 (6.2) BS01 rna ? GO:0000028 ... P02407 25043550
    89444 3j77:18 (6.2) BS01 rna ? GO:0000054 ... P0CX55 25043550
    89445 3j77:19 (6.2) BS01 rna ? GO:0000028 ... P07280 25043550
    89446 3j77:20 (6.2) BS01 rna ? GO:0000462 ... P38701 25043550
    89447 3j77:21 (6.2) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    89448 3j77:22 (6.2) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    89449 3j77:23 (6.2) BS01 rna ? GO:0000462 ... P0CX29 25043550
    89450 3j77:24 (6.2) BS01 rna ? GO:0000462 ... P0CX31 25043550
    89451 3j77:25 (6.2) BS01 rna ? GO:0002181 ... Q3E792 25043550
    89452 3j77:26 (6.2) BS01 rna ? GO:0000054 ... P39938 25043550
    89453 3j77:27 (6.2) BS01 rna ? GO:0000028 ... P35997 25043550
    89454 3j77:28 (6.2) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    89455 3j77:29 (6.2) BS01 rna ? GO:0002181 ... P41057 25043550
    89456 3j77:30 (6.2) BS01 rna ? GO:0002181 ... P0CX33 25043550
    89457 3j77:31 (6.2) BS01 rna ? GO:0000028 ... P05759 25043550
    89458 3j77:60 (6.2) BS01 rna ? GO:0000027 ... P41805 25043550
    89459 3j77:60 (6.2) BS02 rna ? GO:0000027 ... P41805 25043550
    89460 3j77:61 (6.2) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    89461 3j77:61 (6.2) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    89462 3j77:62 (6.2) BS01 rna ? GO:0000027 ... P0CX53 25043550
    89463 3j77:63 (6.2) BS01 rna ? GO:0002181 ... Q12690 25043550
    89464 3j77:63 (6.2) BS02 rna ? GO:0002181 ... Q12690 25043550
    89465 3j77:64 (6.2) BS01 rna ? GO:0000027 ... P36105 25043550
    89466 3j77:65 (6.2) BS01 rna ? GO:0002181 ... P05748 25043550
    89467 3j77:65 (6.2) BS02 rna ? GO:0002181 ... P05748 25043550
    89468 3j77:66 (6.2) BS01 rna ? GO:0000470 ... P26784 25043550
    89469 3j77:67 (6.2) BS01 rna ? GO:0000448 ... P05740 25043550
    89470 3j77:67 (6.2) BS02 rna ? GO:0000448 ... P05740 25043550
    89471 3j77:68 (6.2) BS01 rna ? GO:0002181 ... P0CX49 25043550
    89472 3j77:69 (6.2) BS01 rna ? GO:0002181 ... P0CX82 25043550
    89473 3j77:69 (6.2) BS02 rna ? GO:0002181 ... P0CX82 25043550
    89474 3j77:70 (6.2) BS01 rna ? GO:0002181 ... P0CX23 25043550
    89475 3j77:70 (6.2) BS02 rna ? GO:0002181 ... P0CX23 25043550
    89476 3j77:71 (6.2) BS01 rna ? GO:0002181 ... Q02753 25043550
    89477 3j77:71 (6.2) BS02 rna ? GO:0002181 ... Q02753 25043550
    89478 3j77:72 (6.2) BS01 rna ? GO:0002181 ... P05749 25043550
    89479 3j77:73 (6.2) BS01 rna ? GO:0002181 ... P0CX41 25043550
    89480 3j77:73 (6.2) BS02 rna ? GO:0002181 ... P0CX41 25043550
    89481 3j77:74 (6.2) BS01 rna ? GO:0002181 ... P04449 25043550
    89482 3j77:74 (6.2) BS02 rna ? GO:0002181 ... P04449 25043550
    89483 3j77:75 (6.2) BS01 rna ? GO:0000027 ... P04456 25043550
    89484 3j77:75 (6.2) BS02 rna ? GO:0000027 ... P04456 25043550
    89485 3j77:76 (6.2) BS01 rna ? GO:0002181 ... P05743 25043550
    89486 3j77:76 (6.2) BS02 rna ? GO:0002181 ... P05743 25043550
    89487 3j77:77 (6.2) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    89488 3j77:78 (6.2) BS01 rna ? GO:0002181 ... P02406 25043550
    89489 3j77:79 (6.2) BS01 rna ? GO:0002181 ... P05747 25043550
    89490 3j77:80 (6.2) BS01 rna ? GO:0002181 ... P14120 25043550
    89491 3j77:81 (6.2) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    89492 3j77:82 (6.2) BS01 rna ? GO:0002181 ... P38061 25043550
    89493 3j77:83 (6.2) BS01 rna ? GO:0000027 ... P05744 25043550
    89494 3j77:84 (6.2) BS01 rna ? GO:0002181 ... P87262 25043550
    89495 3j77:85 (6.2) BS01 rna ? GO:0000463 ... P0CX84 25043550
    89496 3j77:85 (6.2) BS02 rna ? GO:0000463 ... P0CX84 25043550
    89497 3j77:86 (6.2) BS01 rna ? GO:0002181 ... P05745 25043550
    89498 3j77:87 (6.2) BS01 rna ? GO:0000448 ... P49166 25043550
    89499 3j77:87 (6.2) BS02 rna ? GO:0000448 ... P49166 25043550
    89500 3j77:88 (6.2) BS01 rna ? GO:0002181 ... P49167 25043550
    89501 3j77:89 (6.2) BS01 rna ? GO:0002181 ... P04650 25043550
    89502 3j77:89 (6.2) BS02 rna ? GO:0002181 ... P04650 25043550
    89503 3j77:90 (6.2) BS01 rna ? GO:0000027 ... P0CH08 25043550
    89504 3j77:92 (6.2) BS01 rna ? GO:0002181 ... P0CX27 25043550
    89505 3j77:92 (6.2) BS02 rna ? GO:0002181 ... P0CX27 25043550
    89506 3j77:93 (6.2) BS01 rna ? GO:0002181 ... P0CX25 25043550
    89507 3j77:93 (6.2) BS02 rna ? GO:0002181 ... P0CX25 25043550
    89508 3j77:L1 (6.2) BS01 rna ? GO:0000055 ... P0CX43 25043550
    89509 3j77:L2 (6.2) BS01 rna ? GO:0002181 ... P0CX45 25043550
    89510 3j77:L3 (6.2) BS01 rna ? GO:0000027 ... P14126 25043550
    89511 3j77:L4 (6.2) BS01 rna ? GO:0002181 ... P10664 25043550
    89512 3j77:L4 (6.2) BS02 rna ? GO:0002181 ... P10664 25043550
    89513 3j77:L5 (6.2) BS01 rna ? GO:0000027 ... P26321 25043550
    89514 3j77:L5 (6.2) BS02 rna ? GO:0000027 ... P26321 25043550
    89515 3j77:L6 (6.2) BS01 rna ? GO:0000027 ... Q02326 25043550
    89516 3j77:L7 (6.2) BS01 rna ? GO:0000463 ... P05737 25043550
    89517 3j77:L7 (6.2) BS02 rna ? GO:0000463 ... P05737 25043550
    89518 3j77:L8 (6.2) BS01 rna ? GO:0000470 ... P17076 25043550
    89519 3j77:L8 (6.2) BS02 rna ? GO:0000470 ... P17076 25043550
    89520 3j77:L9 (6.2) BS01 rna ? GO:0002181 ... P05738 25043550
    89521 3j77:P0 (6.2) BS01 rna ? GO:0000027 ... P05317 25043550
    89522 3j77:RC (6.2) BS01 rna ? GO:0001965 ... P38011 25043550
    89523 3j77:S0 (6.2) BS01 rna ? GO:0000028 ... P32905 25043550
    89524 3j77:S1 (6.2) BS01 rna ? GO:0000462 ... P33442 25043550
    89525 3j77:S1 (6.2) BS02 rna ? GO:0000462 ... P33442 25043550
    89526 3j77:S2 (6.2) BS01 rna ? GO:0000054 ... P25443 25043550
    89527 3j77:S3 (6.2) BS01 rna ? GO:0000054 ... P05750 25043550
    89528 3j77:S4 (6.2) BS01 rna ? GO:0002181 ... P0CX35 25043550
    89529 3j77:S5 (6.2) BS01 rna ? GO:0000028 ... P26783 25043550
    89530 3j77:S6 (6.2) BS01 rna ? GO:0000462 ... P0CX37 25043550
    89531 3j77:S7 (6.2) BS01 rna ? GO:0002181 ... P26786 25043550
    89532 3j77:S8 (6.2) BS01 rna ? GO:0000462 ... P0CX39 25043550
    89533 3j77:S9 (6.2) BS01 rna ? GO:0000462 ... O13516 25043550
    89534 3j78:10 (6.3) BS01 rna ? GO:0000054 ... Q08745 25043550
    89535 3j78:11 (6.3) BS01 rna ? GO:0000028 ... P0CX47 25043550
    89536 3j78:12 (6.3) BS01 rna ? GO:0000028 ... P48589 25043550
    89537 3j78:13 (6.3) BS01 rna ? GO:0000462 ... P05756 25043550
    89538 3j78:14 (6.3) BS01 rna ? GO:0000028 ... P06367 25043550
    89539 3j78:15 (6.3) BS01 rna ? GO:0000028 ... Q01855 25043550
    89540 3j78:16 (6.3) BS01 rna ? GO:0000462 ... P0CX51 25043550
    89541 3j78:17 (6.3) BS01 rna ? GO:0000028 ... P02407 25043550
    89542 3j78:18 (6.3) BS01 rna ? GO:0000054 ... P0CX55 25043550
    89543 3j78:19 (6.3) BS01 rna ? GO:0000028 ... P07280 25043550
    89544 3j78:20 (6.3) BS01 rna ? GO:0000462 ... P38701 25043550
    89545 3j78:21 (6.3) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    89546 3j78:22 (6.3) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    89547 3j78:23 (6.3) BS01 rna ? GO:0000462 ... P0CX29 25043550
    89548 3j78:24 (6.3) BS01 rna ? GO:0000462 ... P0CX31 25043550
    89549 3j78:25 (6.3) BS01 rna ? GO:0002181 ... Q3E792 25043550
    89550 3j78:26 (6.3) BS01 rna ? GO:0000054 ... P39938 25043550
    89551 3j78:27 (6.3) BS01 rna ? GO:0000028 ... P35997 25043550
    89552 3j78:28 (6.3) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    89553 3j78:29 (6.3) BS01 rna ? GO:0002181 ... P41057 25043550
    89554 3j78:30 (6.3) BS01 rna ? GO:0002181 ... P0CX33 25043550
    89555 3j78:31 (6.3) BS01 rna ? GO:0000028 ... P05759 25043550
    89556 3j78:60 (6.3) BS01 rna ? GO:0000027 ... P41805 25043550
    89557 3j78:60 (6.3) BS02 rna ? GO:0000027 ... P41805 25043550
    89558 3j78:61 (6.3) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    89559 3j78:61 (6.3) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    89560 3j78:62 (6.3) BS01 rna ? GO:0000027 ... P0CX53 25043550
    89561 3j78:63 (6.3) BS01 rna ? GO:0002181 ... Q12690 25043550
    89562 3j78:63 (6.3) BS02 rna ? GO:0002181 ... Q12690 25043550
    89563 3j78:64 (6.3) BS01 rna ? GO:0000027 ... P36105 25043550
    89564 3j78:65 (6.3) BS01 rna ? GO:0002181 ... P05748 25043550
    89565 3j78:65 (6.3) BS02 rna ? GO:0002181 ... P05748 25043550
    89566 3j78:66 (6.3) BS01 rna ? GO:0000470 ... P26784 25043550
    89567 3j78:67 (6.3) BS01 rna ? GO:0000448 ... P05740 25043550
    89568 3j78:67 (6.3) BS02 rna ? GO:0000448 ... P05740 25043550
    89569 3j78:68 (6.3) BS01 rna ? GO:0002181 ... P0CX49 25043550
    89570 3j78:69 (6.3) BS01 rna ? GO:0002181 ... P0CX82 25043550
    89571 3j78:69 (6.3) BS02 rna ? GO:0002181 ... P0CX82 25043550
    89572 3j78:70 (6.3) BS01 rna ? GO:0002181 ... P0CX23 25043550
    89573 3j78:70 (6.3) BS02 rna ? GO:0002181 ... P0CX23 25043550
    89574 3j78:71 (6.3) BS01 rna ? GO:0002181 ... Q02753 25043550
    89575 3j78:71 (6.3) BS02 rna ? GO:0002181 ... Q02753 25043550
    89576 3j78:72 (6.3) BS01 rna ? GO:0002181 ... P05749 25043550
    89577 3j78:73 (6.3) BS01 rna ? GO:0002181 ... P0CX41 25043550
    89578 3j78:74 (6.3) BS01 rna ? GO:0002181 ... P04449 25043550
    89579 3j78:75 (6.3) BS01 rna ? GO:0000027 ... P04456 25043550
    89580 3j78:75 (6.3) BS02 rna ? GO:0000027 ... P04456 25043550
    89581 3j78:76 (6.3) BS01 rna ? GO:0002181 ... P05743 25043550
    89582 3j78:76 (6.3) BS02 rna ? GO:0002181 ... P05743 25043550
    89583 3j78:77 (6.3) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    89584 3j78:78 (6.3) BS01 rna ? GO:0002181 ... P02406 25043550
    89585 3j78:79 (6.3) BS01 rna ? GO:0002181 ... P05747 25043550
    89586 3j78:80 (6.3) BS01 rna ? GO:0002181 ... P14120 25043550
    89587 3j78:81 (6.3) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    89588 3j78:82 (6.3) BS01 rna ? GO:0002181 ... P38061 25043550
    89589 3j78:83 (6.3) BS01 rna ? GO:0000027 ... P05744 25043550
    89590 3j78:84 (6.3) BS01 rna ? GO:0002181 ... P87262 25043550
    89591 3j78:85 (6.3) BS01 rna ? GO:0000463 ... P0CX84 25043550
    89592 3j78:85 (6.3) BS02 rna ? GO:0000463 ... P0CX84 25043550
    89593 3j78:86 (6.3) BS01 rna ? GO:0002181 ... P05745 25043550
    89594 3j78:87 (6.3) BS01 rna ? GO:0000448 ... P49166 25043550
    89595 3j78:87 (6.3) BS02 rna ? GO:0000448 ... P49166 25043550
    89596 3j78:88 (6.3) BS01 rna ? GO:0002181 ... P49167 25043550
    89597 3j78:89 (6.3) BS01 rna ? GO:0002181 ... P04650 25043550
    89598 3j78:89 (6.3) BS02 rna ? GO:0002181 ... P04650 25043550
    89599 3j78:90 (6.3) BS01 rna ? GO:0000027 ... P0CH08 25043550
    89600 3j78:92 (6.3) BS01 rna ? GO:0002181 ... P0CX27 25043550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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