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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    89201 3j6e:R (4.7) BS01 G2P ? GO:0000226 ... P02554 24855948
    89202 3j6f:A (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89203 3j6f:B (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89204 3j6f:C (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89205 3j6f:D (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89206 3j6f:E (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89207 3j6f:F (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89208 3j6f:G (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89209 3j6f:H (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89210 3j6f:I (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89211 3j6f:J (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89212 3j6f:K (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89213 3j6f:L (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89214 3j6f:M (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89215 3j6f:N (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89216 3j6f:O (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89217 3j6f:P (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89218 3j6f:Q (4.9) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89219 3j6f:R (4.9) BS01 GDP ? GO:0000226 ... P02554 24855948
    89220 3j6g:A (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89221 3j6g:B (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89222 3j6g:B (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89223 3j6g:C (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89224 3j6g:D (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89225 3j6g:D (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89226 3j6g:E (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89227 3j6g:F (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89228 3j6g:F (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89229 3j6g:G (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89230 3j6g:H (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89231 3j6g:H (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89232 3j6g:I (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89233 3j6g:J (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89234 3j6g:J (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89235 3j6g:K (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89236 3j6g:L (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89237 3j6g:L (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89238 3j6g:M (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89239 3j6g:N (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89240 3j6g:N (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89241 3j6g:O (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89242 3j6g:P (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89243 3j6g:P (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89244 3j6g:Q (5.5) BS01 GTP 3.6.5.- GO:0000226 ... P02550 24855948
    89245 3j6g:R (5.5) BS01 GDP ? GO:0000226 ... P02554 24855948
    89246 3j6g:R (5.5) BS02 TA1 ? GO:0000226 ... P02554 24855948 BindingDB: EC50=520nM
    89247 3j6h:A (8.1) BS01 GTP 3.6.5.- GO:0000226 ... P02550 25777528
    89248 3j6h:B (8.1) BS01 MG ? GO:0000226 ... P02554 25777528
    89249 3j6h:B (8.1) BS02 G2P ? GO:0000226 ... P02554 25777528
    89250 3j6p:A (8.2) BS01 GTP 3.6.5.- GO:0000226 ... P02550 25583999
    89251 3j6p:B (8.2) BS01 GDP ? GO:0000226 ... P02554 25583999
    89252 3j6p:B (8.2) BS02 TA1 ? GO:0000226 ... P02554 25583999 BindingDB: EC50=520nM
    89253 3j6x:10 (6.1) BS01 rna ? GO:0000054 ... Q08745 24927574
    89254 3j6x:11 (6.1) BS01 rna ? GO:0000028 ... P0CX47 24927574
    89255 3j6x:12 (6.1) BS01 rna ? GO:0000028 ... P48589 24927574
    89256 3j6x:13 (6.1) BS01 rna ? GO:0000462 ... P05756 24927574
    89257 3j6x:14 (6.1) BS01 rna ? GO:0000028 ... P06367 24927574
    89258 3j6x:15 (6.1) BS01 rna ? GO:0000028 ... Q01855 24927574
    89259 3j6x:16 (6.1) BS01 rna ? GO:0000462 ... P0CX51 24927574
    89260 3j6x:17 (6.1) BS01 rna ? GO:0000028 ... P02407 24927574
    89261 3j6x:18 (6.1) BS01 rna ? GO:0000054 ... P0CX55 24927574
    89262 3j6x:19 (6.1) BS01 rna ? GO:0000028 ... P07280 24927574
    89263 3j6x:20 (6.1) BS01 rna ? GO:0000462 ... P38701 24927574
    89264 3j6x:22 (6.1) BS01 rna ? GO:0002181 ... P0C0W1 24927574
    89265 3j6x:23 (6.1) BS01 rna ? GO:0000462 ... P0CX29 24927574
    89266 3j6x:24 (6.1) BS01 rna ? GO:0000462 ... P0CX31 24927574
    89267 3j6x:25 (6.1) BS01 rna ? GO:0002181 ... Q3E792 24927574
    89268 3j6x:26 (6.1) BS01 rna ? GO:0000054 ... P39938 24927574
    89269 3j6x:27 (6.1) BS01 rna ? GO:0000028 ... P35997 24927574
    89270 3j6x:28 (6.1) BS01 rna ? GO:0000028 ... Q3E7X9 24927574
    89271 3j6x:29 (6.1) BS01 rna ? GO:0002181 ... P41057 24927574
    89272 3j6x:30 (6.1) BS01 rna ? GO:0002181 ... P0CX33 24927574
    89273 3j6x:31 (6.1) BS01 rna ? GO:0000028 ... P05759 24927574
    89274 3j6x:50 (6.1) BS01 rna ? GO:0000027 ... P41805 24927574
    89275 3j6x:50 (6.1) BS02 rna ? GO:0000027 ... P41805 24927574
    89276 3j6x:51 (6.1) BS01 rna ? GO:0000027 ... P0C0W9 24927574
    89277 3j6x:51 (6.1) BS02 rna ? GO:0000027 ... P0C0W9 24927574
    89278 3j6x:53 (6.1) BS01 rna ? GO:0002181 ... Q12690 24927574
    89279 3j6x:53 (6.1) BS02 rna ? GO:0002181 ... Q12690 24927574
    89280 3j6x:54 (6.1) BS01 rna ? GO:0000027 ... P36105 24927574
    89281 3j6x:55 (6.1) BS01 rna ? GO:0002181 ... P05748 24927574
    89282 3j6x:55 (6.1) BS02 rna ? GO:0002181 ... P05748 24927574
    89283 3j6x:56 (6.1) BS01 rna ? GO:0000470 ... P26784 24927574
    89284 3j6x:57 (6.1) BS01 rna ? GO:0000448 ... P05740 24927574
    89285 3j6x:57 (6.1) BS02 rna ? GO:0000448 ... P05740 24927574
    89286 3j6x:58 (6.1) BS01 rna ? GO:0002181 ... P0CX49 24927574
    89287 3j6x:59 (6.1) BS01 rna ? GO:0002181 ... P0CX82 24927574
    89288 3j6x:59 (6.1) BS02 rna ? GO:0002181 ... P0CX82 24927574
    89289 3j6x:60 (6.1) BS01 rna ? GO:0002181 ... P0CX23 24927574
    89290 3j6x:60 (6.1) BS02 rna ? GO:0002181 ... P0CX23 24927574
    89291 3j6x:61 (6.1) BS01 rna ? GO:0002181 ... Q02753 24927574
    89292 3j6x:61 (6.1) BS02 rna ? GO:0002181 ... Q02753 24927574
    89293 3j6x:62 (6.1) BS01 rna ? GO:0002181 ... P05749 24927574
    89294 3j6x:63 (6.1) BS01 rna ? GO:0002181 ... P0CX41 24927574
    89295 3j6x:64 (6.1) BS01 rna ? GO:0002181 ... P04449 24927574
    89296 3j6x:65 (6.1) BS01 rna ? GO:0000027 ... P04456 24927574
    89297 3j6x:65 (6.1) BS02 rna ? GO:0000027 ... P04456 24927574
    89298 3j6x:66 (6.1) BS01 rna ? GO:0002181 ... P05743 24927574
    89299 3j6x:66 (6.1) BS02 rna ? GO:0002181 ... P05743 24927574
    89300 3j6x:67 (6.1) BS01 rna ? GO:0002181 ... P0C2H6 24927574
    89301 3j6x:68 (6.1) BS01 rna ? GO:0002181 ... P02406 24927574
    89302 3j6x:69 (6.1) BS01 rna ? GO:0002181 ... P05747 24927574
    89303 3j6x:70 (6.1) BS01 rna ? GO:0002181 ... P14120 24927574
    89304 3j6x:71 (6.1) BS01 rna ? GO:0002181 ... P0C2H8 24927574
    89305 3j6x:72 (6.1) BS01 rna ? GO:0002181 ... P38061 24927574
    89306 3j6x:73 (6.1) BS01 rna ? GO:0000027 ... P05744 24927574
    89307 3j6x:74 (6.1) BS01 rna ? GO:0002181 ... P87262 24927574
    89308 3j6x:75 (6.1) BS01 rna ? GO:0000463 ... P0CX84 24927574
    89309 3j6x:75 (6.1) BS02 rna ? GO:0000463 ... P0CX84 24927574
    89310 3j6x:76 (6.1) BS01 rna ? GO:0002181 ... P05745 24927574
    89311 3j6x:77 (6.1) BS01 rna ? GO:0000448 ... P49166 24927574
    89312 3j6x:77 (6.1) BS02 rna ? GO:0000448 ... P49166 24927574
    89313 3j6x:78 (6.1) BS01 rna ? GO:0002181 ... P49167 24927574
    89314 3j6x:79 (6.1) BS01 rna ? GO:0002181 ... P04650 24927574
    89315 3j6x:79 (6.1) BS02 rna ? GO:0002181 ... P04650 24927574
    89316 3j6x:80 (6.1) BS01 rna ? GO:0000027 ... P0CH08 24927574
    89317 3j6x:82 (6.1) BS01 rna ? GO:0002181 ... P0CX27 24927574
    89318 3j6x:83 (6.1) BS01 rna ? GO:0002181 ... P0CX25 24927574
    89319 3j6x:L1 (6.1) BS01 rna ? GO:0000055 ... P0CX43 24927574
    89320 3j6x:L2 (6.1) BS01 rna ? GO:0002181 ... P0CX45 24927574
    89321 3j6x:L2 (6.1) BS02 rna ? GO:0002181 ... P0CX45 24927574
    89322 3j6x:L3 (6.1) BS01 rna ? GO:0000027 ... P14126 24927574
    89323 3j6x:L4 (6.1) BS01 rna ? GO:0002181 ... P10664 24927574
    89324 3j6x:L5 (6.1) BS01 rna ? GO:0000027 ... P26321 24927574
    89325 3j6x:L5 (6.1) BS02 rna ? GO:0000027 ... P26321 24927574
    89326 3j6x:L6 (6.1) BS01 rna ? GO:0000027 ... Q02326 24927574
    89327 3j6x:L7 (6.1) BS01 rna ? GO:0000463 ... P05737 24927574
    89328 3j6x:L7 (6.1) BS02 rna ? GO:0000463 ... P05737 24927574
    89329 3j6x:L8 (6.1) BS01 rna ? GO:0000470 ... P17076 24927574
    89330 3j6x:L8 (6.1) BS02 rna ? GO:0000470 ... P17076 24927574
    89331 3j6x:L9 (6.1) BS01 rna ? GO:0002181 ... P05738 24927574
    89332 3j6x:RA (6.1) BS01 rna ? GO:0001965 ... P38011 24927574
    89333 3j6x:S0 (6.1) BS01 rna ? GO:0000028 ... P32905 24927574
    89334 3j6x:S1 (6.1) BS01 rna ? GO:0000462 ... P33442 24927574
    89335 3j6x:S2 (6.1) BS01 rna ? GO:0000054 ... P25443 24927574
    89336 3j6x:S3 (6.1) BS01 rna ? GO:0000054 ... P05750 24927574
    89337 3j6x:S4 (6.1) BS01 rna ? GO:0002181 ... P0CX35 24927574
    89338 3j6x:S5 (6.1) BS01 rna ? GO:0000028 ... P26783 24927574
    89339 3j6x:S6 (6.1) BS01 rna ? GO:0000462 ... P0CX37 24927574
    89340 3j6x:S7 (6.1) BS01 rna ? GO:0002181 ... P26786 24927574
    89341 3j6x:S8 (6.1) BS01 rna ? GO:0000462 ... P0CX39 24927574
    89342 3j6x:S8 (6.1) BS02 rna ? GO:0000462 ... P0CX39 24927574
    89343 3j6x:S9 (6.1) BS01 rna ? GO:0000462 ... O13516 24927574
    89344 3j6y:10 (6.1) BS01 rna ? GO:0000054 ... Q08745 24927574
    89345 3j6y:11 (6.1) BS01 rna ? GO:0000028 ... P0CX47 24927574
    89346 3j6y:12 (6.1) BS01 rna ? GO:0000028 ... P48589 24927574
    89347 3j6y:13 (6.1) BS01 rna ? GO:0000462 ... P05756 24927574
    89348 3j6y:14 (6.1) BS01 rna ? GO:0000028 ... P06367 24927574
    89349 3j6y:15 (6.1) BS01 rna ? GO:0000028 ... Q01855 24927574
    89350 3j6y:16 (6.1) BS01 rna ? GO:0000462 ... P0CX51 24927574
    89351 3j6y:17 (6.1) BS01 rna ? GO:0000028 ... P02407 24927574
    89352 3j6y:18 (6.1) BS01 rna ? GO:0000054 ... P0CX55 24927574
    89353 3j6y:19 (6.1) BS01 rna ? GO:0000028 ... P07280 24927574
    89354 3j6y:20 (6.1) BS01 rna ? GO:0000462 ... P38701 24927574
    89355 3j6y:22 (6.1) BS01 rna ? GO:0002181 ... P0C0W1 24927574
    89356 3j6y:23 (6.1) BS01 rna ? GO:0000462 ... P0CX29 24927574
    89357 3j6y:24 (6.1) BS01 rna ? GO:0000462 ... P0CX31 24927574
    89358 3j6y:25 (6.1) BS01 rna ? GO:0002181 ... Q3E792 24927574
    89359 3j6y:26 (6.1) BS01 rna ? GO:0000054 ... P39938 24927574
    89360 3j6y:27 (6.1) BS01 rna ? GO:0000028 ... P35997 24927574
    89361 3j6y:28 (6.1) BS01 rna ? GO:0000028 ... Q3E7X9 24927574
    89362 3j6y:29 (6.1) BS01 rna ? GO:0002181 ... P41057 24927574
    89363 3j6y:30 (6.1) BS01 rna ? GO:0002181 ... P0CX33 24927574
    89364 3j6y:31 (6.1) BS01 rna ? GO:0000028 ... P05759 24927574
    89365 3j6y:50 (6.1) BS01 rna ? GO:0000027 ... P41805 24927574
    89366 3j6y:50 (6.1) BS02 rna ? GO:0000027 ... P41805 24927574
    89367 3j6y:51 (6.1) BS01 rna ? GO:0000027 ... P0C0W9 24927574
    89368 3j6y:51 (6.1) BS02 rna ? GO:0000027 ... P0C0W9 24927574
    89369 3j6y:53 (6.1) BS01 rna ? GO:0002181 ... Q12690 24927574
    89370 3j6y:54 (6.1) BS01 rna ? GO:0000027 ... P36105 24927574
    89371 3j6y:55 (6.1) BS01 rna ? GO:0002181 ... P05748 24927574
    89372 3j6y:55 (6.1) BS02 rna ? GO:0002181 ... P05748 24927574
    89373 3j6y:56 (6.1) BS01 rna ? GO:0000470 ... P26784 24927574
    89374 3j6y:57 (6.1) BS01 rna ? GO:0000448 ... P05740 24927574
    89375 3j6y:57 (6.1) BS02 rna ? GO:0000448 ... P05740 24927574
    89376 3j6y:58 (6.1) BS01 rna ? GO:0002181 ... P0CX49 24927574
    89377 3j6y:59 (6.1) BS01 rna ? GO:0002181 ... P0CX82 24927574
    89378 3j6y:59 (6.1) BS02 rna ? GO:0002181 ... P0CX82 24927574
    89379 3j6y:60 (6.1) BS01 rna ? GO:0002181 ... P0CX23 24927574
    89380 3j6y:60 (6.1) BS02 rna ? GO:0002181 ... P0CX23 24927574
    89381 3j6y:61 (6.1) BS01 rna ? GO:0002181 ... Q02753 24927574
    89382 3j6y:61 (6.1) BS02 rna ? GO:0002181 ... Q02753 24927574
    89383 3j6y:62 (6.1) BS01 rna ? GO:0002181 ... P05749 24927574
    89384 3j6y:63 (6.1) BS01 rna ? GO:0002181 ... P0CX41 24927574
    89385 3j6y:63 (6.1) BS02 rna ? GO:0002181 ... P0CX41 24927574
    89386 3j6y:64 (6.1) BS01 rna ? GO:0002181 ... P04449 24927574
    89387 3j6y:65 (6.1) BS01 rna ? GO:0000027 ... P04456 24927574
    89388 3j6y:65 (6.1) BS02 rna ? GO:0000027 ... P04456 24927574
    89389 3j6y:66 (6.1) BS01 rna ? GO:0002181 ... P05743 24927574
    89390 3j6y:66 (6.1) BS02 rna ? GO:0002181 ... P05743 24927574
    89391 3j6y:67 (6.1) BS01 rna ? GO:0002181 ... P0C2H6 24927574
    89392 3j6y:68 (6.1) BS01 rna ? GO:0002181 ... P02406 24927574
    89393 3j6y:69 (6.1) BS01 rna ? GO:0002181 ... P05747 24927574
    89394 3j6y:70 (6.1) BS01 rna ? GO:0002181 ... P14120 24927574
    89395 3j6y:71 (6.1) BS01 rna ? GO:0002181 ... P0C2H8 24927574
    89396 3j6y:72 (6.1) BS01 rna ? GO:0002181 ... P38061 24927574
    89397 3j6y:73 (6.1) BS01 rna ? GO:0000027 ... P05744 24927574
    89398 3j6y:74 (6.1) BS01 rna ? GO:0002181 ... P87262 24927574
    89399 3j6y:75 (6.1) BS01 rna ? GO:0000463 ... P0CX84 24927574
    89400 3j6y:75 (6.1) BS02 rna ? GO:0000463 ... P0CX84 24927574
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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