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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 1fwq:A (-1.00) BS01 ZN ? GO:0005085 ... P47224 7651540
    8602 1fws:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    8603 1fws:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    8604 1fwt:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8605 1fwt:A (1.9) BS02 E4P 2.5.1.55 GO:0005737 ... O66496 11115499
    8606 1fwt:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8607 1fww:A (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    8608 1fww:A (1.85) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 19228070
    8609 1fww:B (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    8610 1fwx:A (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8611 1fwx:A (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8612 1fwx:A (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8613 1fwx:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8614 1fwx:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8615 1fwx:B (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8616 1fwx:C (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8617 1fwx:C (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8618 1fwx:C (1.6) BS03 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8619 1fwx:C (1.6) BS04 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8620 1fwx:D (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8621 1fwx:D (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8622 1fwx:D (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    8623 1fwy:A (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    8624 1fwy:B (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    8625 1fwz:A (2.3) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    8626 1fwz:A (2.3) BS02 ZN ? GO:0003677 ... P0DJL7 11320302
    8627 1fx6:A (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8628 1fx6:B (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8629 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    8630 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    8631 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    8632 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    8633 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    8634 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    8635 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    8636 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    8637 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    8638 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    8639 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    8640 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    8641 1fx8:A (2.2) BS01 GOL ? GO:0005372 ... P0AER0 11039922
    8642 1fx8:A (2.2) BS02 GOL ? GO:0005372 ... P0AER0 11039922
    8643 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    8644 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8645 1fx9:A (2.0) BS03 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    8646 1fx9:B (2.0) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    8647 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    8648 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8649 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8650 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    8651 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8652 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8653 1fxf:A (1.85) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    8654 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8655 1fxf:B (1.85) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    8656 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    8657 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8658 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8659 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    8660 1fxl:A (1.8) BS01 rna ? GO:0003676 ... P26378 11175903
    8661 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8662 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8663 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8664 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8665 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    8666 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8667 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    8668 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    8669 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    8670 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    8671 1fy4:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    8672 1fy5:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    8673 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8674 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    8675 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    8676 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    8677 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    8678 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8679 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8680 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8681 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    8682 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8683 1fyt:A (2.6) BS01 peptide ? GO:0006955 ... P01903 11060013
    8684 1fyt:B (2.6) BS01 peptide ? GO:0006955 ... P01911 11060013
    8685 1fza:C (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    8686 1fza:F (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    8687 1fzb:C (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    8688 1fzb:C (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    8689 1fzb:F (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    8690 1fzb:F (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    8691 1fzc:B (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    8692 1fzc:B (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    8693 1fzc:C (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    8694 1fzc:C (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    8695 1fzc:E (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    8696 1fzc:E (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    8697 1fzc:F (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    8698 1fzc:F (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    8699 1fze:B (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    8700 1fze:B (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    8701 1fze:C (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    8702 1fze:E (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    8703 1fze:E (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    8704 1fze:F (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    8705 1fzf:B (2.7) BS01 peptide ? GO:0005102 ... P02675 10074346
    8706 1fzf:B (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    8707 1fzf:C (2.7) BS01 peptide ? GO:0005102 ... P02679 10074346
    8708 1fzf:C (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    8709 1fzf:C (2.7) BS03 CA ? GO:0005102 ... P02679 10074346
    8710 1fzf:E (2.7) BS01 peptide ? GO:0005102 ... P02675 10074346
    8711 1fzf:E (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    8712 1fzf:E (2.7) BS03 CA ? GO:0005102 ... P02675 10074346
    8713 1fzf:F (2.7) BS01 peptide ? GO:0005102 ... P02679 10074346
    8714 1fzf:F (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    8715 1fzg:B (2.5) BS01 peptide ? GO:0005102 ... P02675 10074346
    8716 1fzg:B (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    8717 1fzg:B (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    8718 1fzg:C (2.5) BS01 peptide ? GO:0005102 ... P02679 10074346
    8719 1fzg:C (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    8720 1fzg:C (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    8721 1fzg:E (2.5) BS01 peptide ? GO:0005102 ... P02675 10074346
    8722 1fzg:E (2.5) BS02 CA ? GO:0005102 ... P02675 10074346
    8723 1fzg:E (2.5) BS03 CA ? GO:0005102 ... P02675 10074346
    8724 1fzg:F (2.5) BS01 peptide ? GO:0005102 ... P02679 10074346
    8725 1fzg:F (2.5) BS02 CA ? GO:0005102 ... P02679 10074346
    8726 1fzg:F (2.5) BS03 CA ? GO:0005102 ... P02679 10074346
    8727 1fzq:A (1.7) BS01 GDP ? GO:0000139 ... Q9WUL7 11188688 MOAD: Kd=24nM
    PDBbind: -logKd/Ki=7.62, Kd=24nM
    8728 1fzu:A (1.8) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8729 1fzz:A (1.86) BS01 681 3.4.21.36 GO:0004252 ... P00772 11310599
    8730 1g02:A (1.86) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    8731 1g05:A (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8732 1g05:A (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8733 1g05:A (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8734 1g05:A (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8735 1g05:A (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8736 1g05:B (2.45) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8737 1g05:B (2.45) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 11327577
    8738 1g05:B (2.45) BS03 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8739 1g05:B (2.45) BS04 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8740 1g05:B (2.45) BS05 CA 3.4.24.17 GO:0004222 ... P08254 11327577
    8741 1g05:B (2.45) BS06 BBH 3.4.24.17 GO:0004222 ... P08254 11327577 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    BindingDB: IC50=3.1nM
    8742 1g08:A (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    8743 1g08:B (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    8744 1g08:C (1.9) BS01 HEM ? GO:0004601 ... P01966 11112521
    8745 1g08:D (1.9) BS01 HEM ? GO:0004601 ... P02070 11112521
    8746 1g09:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8747 1g09:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8748 1g09:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8749 1g09:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8750 1g0a:A (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8751 1g0a:B (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8752 1g0a:C (2.04) BS01 HEM ? GO:0004601 ... P01966 11112521
    8753 1g0a:D (2.04) BS01 HEM ? GO:0004601 ... P02070 11112521
    8754 1g0b:A (1.9) BS01 HEM ? GO:0004601 ... P01958 11112521
    8755 1g0b:B (1.9) BS01 HEM ? GO:0004601 ... P02062 11112521
    8756 1g0d:A (2.5) BS01 SO4 2.3.1.-
    2.3.2.13
    3.4.-.-
    3.5.1.44
    GO:0000785 ... P52181 11080504
    8757 1g0e:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    8758 1g0e:A (1.6) BS02 4MZ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    8759 1g0f:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 11327835
    8760 1g0n:A (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8761 1g0n:A (2.0) BS02 PHH 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=25nM
    8762 1g0n:B (2.0) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8763 1g0o:A (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8764 1g0o:A (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8765 1g0o:B (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8766 1g0o:B (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8767 1g0o:C (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8768 1g0o:C (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8769 1g0o:D (1.7) BS01 NDP 1.1.1.252 GO:0005575 ... Q12634 11342131
    8770 1g0o:D (1.7) BS02 PYQ 1.1.1.252 GO:0005575 ... Q12634 11342131 MOAD: Ki=14nM
    8771 1g0u:2 (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    8772 1g0u:G (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    8773 1g0u:G (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    8774 1g0u:H (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    8775 1g0u:I (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    8776 1g0u:K (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    8777 1g0u:L (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    8778 1g0u:L (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    8779 1g0u:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 11062564
    8780 1g0u:U (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    8781 1g0u:U (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P21243 11062564
    8782 1g0u:V (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 11062564
    8783 1g0u:W (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P25451 11062564
    8784 1g0u:Y (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P30656 11062564
    8785 1g0u:Z (2.4) BS01 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    8786 1g0u:Z (2.4) BS02 MG 3.4.99.46 GO:0000502 ... P23724 11062564
    8787 1g0v:A (2.0) BS01 peptide 3.4.23.25 GO:0000324 ... P07267 11042188
    8788 1g0v:A (2.0) BS02 MAN 3.4.23.25 GO:0000324 ... P07267 11042188
    8789 1g15:A (1.9) BS01 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    8790 1g15:A (1.9) BS02 MN 3.1.26.4 GO:0000287 ... P0A7Y4 11083878
    8791 1g1d:A (2.04) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    8792 1g1d:A (2.04) BS02 FSB 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A MOAD: Kd=0.36nM
    PDBbind: -logKd/Ki=9.44, Kd=0.36nM
    8793 1g1x:A (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 10753109
    8794 1g1x:A (2.6) BS02 rna ? GO:0003735 ... Q5SLP8 10753109
    8795 1g1x:B (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 10753109
    8796 1g1x:B (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 10753109
    8797 1g1x:C (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 10753109
    8798 1g1x:F (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 10753109
    8799 1g1x:F (2.6) BS02 rna ? GO:0003735 ... Q5SLP8 10753109
    8800 1g1x:G (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 10753109

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218