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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    68001 2wse:L (3.49) BS01 CLA ? GO:0009507 ... Q41385 19923216
    68002 2wse:L (3.49) BS02 CLA ? GO:0009507 ... Q41385 19923216
    68003 2wse:L (3.49) BS03 CLA ? GO:0009507 ... Q41385 19923216
    68004 2wse:L (3.49) BS04 CLA ? GO:0009507 ... Q41385 19923216
    68005 2wse:L (3.49) BS05 CLA ? GO:0009507 ... Q41385 19923216
    68006 2wse:L (3.49) BS06 CLA ? GO:0009507 ... Q41385 19923216
    68007 2wse:L (3.49) BS07 CLA ? GO:0009507 ... Q41385 19923216
    68008 2wse:L (3.49) BS08 CLA ? GO:0009507 ... Q41385 19923216
    68009 2wse:L (3.49) BS09 CLA ? GO:0009507 ... Q41385 19923216
    68010 2wsf:1 (3.48) BS01 CLA ? GO:0003729 ... Q01667 19923216
    68011 2wsf:1 (3.48) BS02 CLA ? GO:0003729 ... Q01667 19923216
    68012 2wsf:1 (3.48) BS03 CLA ? GO:0003729 ... Q01667 19923216
    68013 2wsf:1 (3.48) BS04 CLA ? GO:0003729 ... Q01667 19923216
    68014 2wsf:1 (3.48) BS05 CLA ? GO:0003729 ... Q01667 19923216
    68015 2wsf:1 (3.48) BS06 CLA ? GO:0003729 ... Q01667 19923216
    68016 2wsf:1 (3.48) BS07 CLA ? GO:0003729 ... Q01667 19923216
    68017 2wsf:1 (3.48) BS08 CLA ? GO:0003729 ... Q01667 19923216
    68018 2wsf:2 (3.48) BS01 GLC ? GO:0009416 ... Q41038 19923216
    68019 2wsf:2 (3.48) BS02 CLA ? GO:0009416 ... Q41038 19923216
    68020 2wsf:2 (3.48) BS03 CLA ? GO:0009416 ... Q41038 19923216
    68021 2wsf:2 (3.48) BS04 CLA ? GO:0009416 ... Q41038 19923216
    68022 2wsf:2 (3.48) BS05 CLA ? GO:0009416 ... Q41038 19923216
    68023 2wsf:2 (3.48) BS06 CLA ? GO:0009416 ... Q41038 19923216
    68024 2wsf:2 (3.48) BS07 CLA ? GO:0009416 ... Q41038 19923216
    68025 2wsf:3 (3.48) BS01 CLA ? GO:0009507 ... C6TEX2 19923216
    68026 2wsf:3 (3.48) BS02 CLA ? GO:0009507 ... C6TEX2 19923216
    68027 2wsf:3 (3.48) BS03 CLA ? GO:0009507 ... C6TEX2 19923216
    68028 2wsf:3 (3.48) BS04 CLA ? GO:0009507 ... C6TEX2 19923216
    68029 2wsf:4 (3.48) BS01 CLA ? GO:0009416 ... Q9SQL2 19923216
    68030 2wsf:4 (3.48) BS02 CLA ? GO:0009416 ... Q9SQL2 19923216
    68031 2wsf:4 (3.48) BS03 CLA ? GO:0009416 ... Q9SQL2 19923216
    68032 2wsf:4 (3.48) BS04 CLA ? GO:0009416 ... Q9SQL2 19923216
    68033 2wsf:4 (3.48) BS05 CLA ? GO:0009416 ... Q9SQL2 19923216
    68034 2wsf:4 (3.48) BS06 CLA ? GO:0009416 ... Q9SQL2 19923216
    68035 2wsf:4 (3.48) BS07 CLA ? GO:0009416 ... Q9SQL2 19923216
    68036 2wsf:4 (3.48) BS08 CLA ? GO:0009416 ... Q9SQL2 19923216
    68037 2wsf:4 (3.48) BS09 CLA ? GO:0009416 ... Q9SQL2 19923216
    68038 2wsf:4 (3.48) BS10 CLA ? GO:0009416 ... Q9SQL2 19923216
    68039 2wsf:4 (3.48) BS11 CLA ? GO:0009416 ... Q9SQL2 19923216
    68040 2wsf:A (3.48) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68041 2wsf:A (3.48) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68042 2wsf:A (3.48) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68043 2wsf:A (3.48) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68044 2wsf:A (3.48) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68045 2wsf:A (3.48) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68046 2wsf:A (3.48) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68047 2wsf:A (3.48) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68048 2wsf:A (3.48) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68049 2wsf:A (3.48) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68050 2wsf:A (3.48) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68051 2wsf:A (3.48) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68052 2wsf:A (3.48) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68053 2wsf:A (3.48) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68054 2wsf:A (3.48) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68055 2wsf:A (3.48) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68056 2wsf:A (3.48) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68057 2wsf:A (3.48) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68058 2wsf:A (3.48) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68059 2wsf:A (3.48) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68060 2wsf:A (3.48) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68061 2wsf:A (3.48) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68062 2wsf:A (3.48) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68063 2wsf:A (3.48) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68064 2wsf:A (3.48) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68065 2wsf:A (3.48) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68066 2wsf:A (3.48) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68067 2wsf:A (3.48) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68068 2wsf:A (3.48) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68069 2wsf:A (3.48) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68070 2wsf:A (3.48) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68071 2wsf:A (3.48) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68072 2wsf:A (3.48) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68073 2wsf:A (3.48) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68074 2wsf:A (3.48) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68075 2wsf:A (3.48) BS36 PQN 1.97.1.12 GO:0000287 ... P05310 19923216
    68076 2wsf:A (3.48) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68077 2wsf:A (3.48) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68078 2wsf:A (3.48) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68079 2wsf:A (3.48) BS40 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    68080 2wsf:A (3.48) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68081 2wsf:A (3.48) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68082 2wsf:A (3.48) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68083 2wsf:A (3.48) BS44 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68084 2wsf:A (3.48) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    68085 2wsf:B (3.48) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68086 2wsf:B (3.48) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68087 2wsf:B (3.48) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68088 2wsf:B (3.48) BS04 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    68089 2wsf:B (3.48) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68090 2wsf:B (3.48) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68091 2wsf:B (3.48) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68092 2wsf:B (3.48) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68093 2wsf:B (3.48) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68094 2wsf:B (3.48) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68095 2wsf:B (3.48) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68096 2wsf:B (3.48) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68097 2wsf:B (3.48) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68098 2wsf:B (3.48) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68099 2wsf:B (3.48) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68100 2wsf:B (3.48) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68101 2wsf:B (3.48) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68102 2wsf:B (3.48) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68103 2wsf:B (3.48) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68104 2wsf:B (3.48) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68105 2wsf:B (3.48) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68106 2wsf:B (3.48) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68107 2wsf:B (3.48) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68108 2wsf:B (3.48) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68109 2wsf:B (3.48) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68110 2wsf:B (3.48) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68111 2wsf:B (3.48) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68112 2wsf:B (3.48) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68113 2wsf:B (3.48) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68114 2wsf:B (3.48) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68115 2wsf:B (3.48) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68116 2wsf:B (3.48) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68117 2wsf:B (3.48) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68118 2wsf:B (3.48) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68119 2wsf:B (3.48) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68120 2wsf:B (3.48) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68121 2wsf:B (3.48) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68122 2wsf:B (3.48) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68123 2wsf:B (3.48) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68124 2wsf:B (3.48) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68125 2wsf:B (3.48) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68126 2wsf:B (3.48) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68127 2wsf:B (3.48) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68128 2wsf:B (3.48) BS44 PQN 1.97.1.12 GO:0000287 ... P05311 19923216
    68129 2wsf:B (3.48) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68130 2wsf:B (3.48) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68131 2wsf:B (3.48) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68132 2wsf:B (3.48) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68133 2wsf:B (3.48) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    68134 2wsf:C (3.48) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    68135 2wsf:C (3.48) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    68136 2wsf:F (3.48) BS01 CLA ? GO:0009507 ... P12355 19923216
    68137 2wsf:F (3.48) BS02 CLA ? GO:0009507 ... P12355 19923216
    68138 2wsf:F (3.48) BS03 CLA ? GO:0009507 ... P12355 19923216
    68139 2wsf:F (3.48) BS04 CLA ? GO:0009507 ... P12355 19923216
    68140 2wsf:F (3.48) BS05 CLA ? GO:0009507 ... P12355 19923216
    68141 2wsf:G (3.48) BS01 CLA ? GO:0009507 ... P12357 19923216
    68142 2wsf:G (3.48) BS02 CLA ? GO:0009507 ... P12357 19923216
    68143 2wsf:H (3.48) BS01 FRU ? GO:0009507 ... P22179 19923216
    68144 2wsf:H (3.48) BS02 CLA ? GO:0009507 ... P22179 19923216
    68145 2wsf:H (3.48) BS03 CLA ? GO:0009507 ... P22179 19923216
    68146 2wsf:I (3.48) BS01 CLA ? GO:0009507 ... P17227 19923216
    68147 2wsf:I (3.48) BS02 CLA ? GO:0009507 ... P17227 19923216
    68148 2wsf:I (3.48) BS03 CLA ? GO:0009507 ... P17227 19923216
    68149 2wsf:I (3.48) BS04 CLA ? GO:0009507 ... P17227 19923216
    68150 2wsf:J (3.48) BS01 CLA ? GO:0009507 ... P17230 19923216
    68151 2wsf:L (3.48) BS01 CLA ? GO:0009507 ... Q41385 19923216
    68152 2wsf:L (3.48) BS02 CLA ? GO:0009507 ... Q41385 19923216
    68153 2wsf:L (3.48) BS03 CLA ? GO:0009507 ... Q41385 19923216
    68154 2wsf:L (3.48) BS04 CLA ? GO:0009507 ... Q41385 19923216
    68155 2wsf:L (3.48) BS05 CLA ? GO:0009507 ... Q41385 19923216
    68156 2wsf:L (3.48) BS06 CLA ? GO:0009507 ... Q41385 19923216
    68157 2wsf:L (3.48) BS07 CLA ? GO:0009507 ... Q41385 19923216
    68158 2wsf:L (3.48) BS08 CLA ? GO:0009507 ... Q41385 19923216
    68159 2wsf:L (3.48) BS09 CLA ? GO:0009507 ... Q41385 19923216
    68160 2wsf:L (3.48) BS10 CLA ? GO:0009507 ... Q41385 19923216
    68161 2wsi:A (1.9) BS01 FAD 2.7.7.2 GO:0003824 ... P38913 20359485
    68162 2wsl:A (2.0) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 19368529
    68163 2wsl:A (2.0) BS02 FUC 3.1.1.8 GO:0001540 ... P06276 19368529
    68164 2wsl:A (2.0) BS03 EFS 3.1.1.8 GO:0001540 ... P06276 19368529
    68165 2wsp:A (2.65) BS01 FUY 3.2.1.51 GO:0004560 ... Q9WYE2 19875083
    68166 2wsp:A (2.65) BS02 FUC 3.2.1.51 GO:0004560 ... Q9WYE2 19875083
    68167 2wsp:B (2.65) BS01 FUY 3.2.1.51 GO:0004560 ... Q9WYE2 19875083
    68168 2wsp:B (2.65) BS02 FUC 3.2.1.51 GO:0004560 ... Q9WYE2 19875083
    68169 2wsr:A (1.65) BS01 AZI 5.3.1.1 GO:0004807 ... P04789 N/A
    68170 2wss:A (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68171 2wss:A (3.2) BS02 MG ? GO:0005515 ... P19483 19995987
    68172 2wss:B (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68173 2wss:B (3.2) BS02 MG ? GO:0005515 ... P19483 19995987
    68174 2wss:C (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68175 2wss:C (3.2) BS02 MG ? GO:0005515 ... P19483 19995987
    68176 2wss:D (3.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 19995987
    68177 2wss:D (3.2) BS02 MG 7.1.2.2 GO:0005515 ... P00829 19995987
    68178 2wss:F (3.2) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 19995987
    68179 2wss:J (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68180 2wss:K (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68181 2wss:K (3.2) BS02 ANP ? GO:0005515 ... P19483 19995987
    68182 2wss:L (3.2) BS01 ANP ? GO:0005515 ... P19483 19995987
    68183 2wss:M (3.2) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 19995987
    68184 2wss:M (3.2) BS02 MG 7.1.2.2 GO:0005515 ... P00829 19995987
    68185 2wss:O (3.2) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 19995987
    68186 2wss:V (3.2) BS01 peptide ? GO:0015078 ... P02721 19995987
    68187 2wsw:A (2.294) BS01 CM5 ? GO:0005886 ... B4EY22 20829798
    68188 2wsx:A (3.5) BS01 NM2 ? GO:0005886 ... P31553 20829798 PDBbind: -logKd/Ki=2.41, Kd=3.9mM
    68189 2wsx:A (3.5) BS02 NM2 ? GO:0005886 ... P31553 20829798 PDBbind: -logKd/Ki=2.41, Kd=3.9mM
    68190 2wsx:B (3.5) BS01 NM2 ? GO:0005886 ... P31553 20829798
    68191 2wsx:B (3.5) BS02 NM2 ? GO:0005886 ... P31553 20829798
    68192 2wsx:C (3.5) BS01 NM2 ? GO:0005886 ... P31553 20829798
    68193 2wsx:C (3.5) BS02 NM2 ? GO:0005886 ... P31553 20829798
    68194 2wsy:B (3.05) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 9548921
    68195 2wt4:A (1.8) BS01 ASP 3.5.1.1 GO:0004067 ... Q9ZLB9 19966411
    68196 2wtg:A (1.5) BS01 HEM ? GO:0005344 ... P30627 20361867
    68197 2wth:A (2.8) BS01 HEM ? GO:0005344 ... P30627 20361867
    68198 2wth:A (2.8) BS02 OXY ? GO:0005344 ... P30627 20361867
    68199 2wth:B (2.8) BS01 HEM ? GO:0005344 ... P30627 20361867
    68200 2wtl:A (2.59) BS01 FE 1.16.3.1 GO:0004322 ... P9WPQ9 19946376

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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