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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    67801 2wsc:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67802 2wsc:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67803 2wsc:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67804 2wsc:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67805 2wsc:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67806 2wsc:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67807 2wsc:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67808 2wsc:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67809 2wsc:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67810 2wsc:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67811 2wsc:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67812 2wsc:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67813 2wsc:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67814 2wsc:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67815 2wsc:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67816 2wsc:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67817 2wsc:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67818 2wsc:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67819 2wsc:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67820 2wsc:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67821 2wsc:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67822 2wsc:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67823 2wsc:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67824 2wsc:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67825 2wsc:B (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67826 2wsc:B (3.3) BS43 PQN 1.97.1.12 GO:0000287 ... P05311 19923216
    67827 2wsc:B (3.3) BS44 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    67828 2wsc:B (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67829 2wsc:B (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67830 2wsc:B (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67831 2wsc:B (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67832 2wsc:C (3.3) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    67833 2wsc:C (3.3) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    67834 2wsc:F (3.3) BS01 CLA ? GO:0009507 ... P12355 19923216
    67835 2wsc:F (3.3) BS02 CLA ? GO:0009507 ... P12355 19923216
    67836 2wsc:F (3.3) BS03 CLA ? GO:0009507 ... P12355 19923216
    67837 2wsc:G (3.3) BS01 CLA ? GO:0009507 ... P12357 19923216
    67838 2wsc:G (3.3) BS02 CLA ? GO:0009507 ... P12357 19923216
    67839 2wsc:H (3.3) BS01 FRU ? GO:0009507 ... P22179 19923216
    67840 2wsc:H (3.3) BS02 CLA ? GO:0009507 ... P22179 19923216
    67841 2wsc:H (3.3) BS03 CLA ? GO:0009507 ... P22179 19923216
    67842 2wsc:I (3.3) BS01 CLA ? GO:0009507 ... P17227 19923216
    67843 2wsc:I (3.3) BS02 CLA ? GO:0009507 ... P17227 19923216
    67844 2wsc:I (3.3) BS03 CLA ? GO:0009507 ... P17227 19923216
    67845 2wsc:I (3.3) BS04 CLA ? GO:0009507 ... P17227 19923216
    67846 2wsc:J (3.3) BS01 CLA ? GO:0009507 ... P17230 19923216
    67847 2wsc:L (3.3) BS01 CLA ? GO:0009507 ... Q41385 19923216
    67848 2wsc:L (3.3) BS02 CLA ? GO:0009507 ... Q41385 19923216
    67849 2wsc:L (3.3) BS03 CLA ? GO:0009507 ... Q41385 19923216
    67850 2wsc:L (3.3) BS04 CLA ? GO:0009507 ... Q41385 19923216
    67851 2wsc:L (3.3) BS05 CLA ? GO:0009507 ... Q41385 19923216
    67852 2wsc:L (3.3) BS06 CLA ? GO:0009507 ... Q41385 19923216
    67853 2wsc:L (3.3) BS07 CLA ? GO:0009507 ... Q41385 19923216
    67854 2wsc:L (3.3) BS08 CLA ? GO:0009507 ... Q41385 19923216
    67855 2wsc:L (3.3) BS09 CLA ? GO:0009507 ... Q41385 19923216
    67856 2wsd:A (1.6) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    67857 2wsd:A (1.6) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    67858 2wsd:A (1.6) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    67859 2wsd:A (1.6) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    67860 2wsd:A (1.6) BS05 OXY 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    67861 2wse:1 (3.49) BS01 CLA ? GO:0003729 ... Q01667 19923216
    67862 2wse:1 (3.49) BS02 CLA ? GO:0003729 ... Q01667 19923216
    67863 2wse:1 (3.49) BS03 CLA ? GO:0003729 ... Q01667 19923216
    67864 2wse:1 (3.49) BS04 CLA ? GO:0003729 ... Q01667 19923216
    67865 2wse:1 (3.49) BS05 CLA ? GO:0003729 ... Q01667 19923216
    67866 2wse:1 (3.49) BS06 CLA ? GO:0003729 ... Q01667 19923216
    67867 2wse:1 (3.49) BS07 CLA ? GO:0003729 ... Q01667 19923216
    67868 2wse:2 (3.49) BS01 GLC ? GO:0009416 ... Q41038 19923216
    67869 2wse:2 (3.49) BS02 CLA ? GO:0009416 ... Q41038 19923216
    67870 2wse:2 (3.49) BS03 CLA ? GO:0009416 ... Q41038 19923216
    67871 2wse:2 (3.49) BS04 CLA ? GO:0009416 ... Q41038 19923216
    67872 2wse:2 (3.49) BS05 CLA ? GO:0009416 ... Q41038 19923216
    67873 2wse:2 (3.49) BS06 CLA ? GO:0009416 ... Q41038 19923216
    67874 2wse:3 (3.49) BS01 CLA ? GO:0009507 ... C6TEX2 19923216
    67875 2wse:3 (3.49) BS02 CLA ? GO:0009507 ... C6TEX2 19923216
    67876 2wse:3 (3.49) BS03 CLA ? GO:0009507 ... C6TEX2 19923216
    67877 2wse:3 (3.49) BS04 CLA ? GO:0009507 ... C6TEX2 19923216
    67878 2wse:3 (3.49) BS05 CLA ? GO:0009507 ... C6TEX2 19923216
    67879 2wse:3 (3.49) BS06 CLA ? GO:0009507 ... C6TEX2 19923216
    67880 2wse:3 (3.49) BS07 CLA ? GO:0009507 ... C6TEX2 19923216
    67881 2wse:4 (3.49) BS01 CLA ? GO:0009416 ... Q9SQL2 19923216
    67882 2wse:4 (3.49) BS02 CLA ? GO:0009416 ... Q9SQL2 19923216
    67883 2wse:4 (3.49) BS03 CLA ? GO:0009416 ... Q9SQL2 19923216
    67884 2wse:4 (3.49) BS04 CLA ? GO:0009416 ... Q9SQL2 19923216
    67885 2wse:4 (3.49) BS05 CLA ? GO:0009416 ... Q9SQL2 19923216
    67886 2wse:4 (3.49) BS06 CLA ? GO:0009416 ... Q9SQL2 19923216
    67887 2wse:4 (3.49) BS07 CLA ? GO:0009416 ... Q9SQL2 19923216
    67888 2wse:4 (3.49) BS08 CLA ? GO:0009416 ... Q9SQL2 19923216
    67889 2wse:4 (3.49) BS09 CLA ? GO:0009416 ... Q9SQL2 19923216
    67890 2wse:4 (3.49) BS10 CLA ? GO:0009416 ... Q9SQL2 19923216
    67891 2wse:A (3.49) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67892 2wse:A (3.49) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67893 2wse:A (3.49) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67894 2wse:A (3.49) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67895 2wse:A (3.49) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67896 2wse:A (3.49) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67897 2wse:A (3.49) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67898 2wse:A (3.49) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67899 2wse:A (3.49) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67900 2wse:A (3.49) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67901 2wse:A (3.49) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67902 2wse:A (3.49) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67903 2wse:A (3.49) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67904 2wse:A (3.49) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67905 2wse:A (3.49) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67906 2wse:A (3.49) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67907 2wse:A (3.49) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67908 2wse:A (3.49) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67909 2wse:A (3.49) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67910 2wse:A (3.49) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67911 2wse:A (3.49) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67912 2wse:A (3.49) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67913 2wse:A (3.49) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67914 2wse:A (3.49) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67915 2wse:A (3.49) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67916 2wse:A (3.49) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67917 2wse:A (3.49) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67918 2wse:A (3.49) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67919 2wse:A (3.49) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67920 2wse:A (3.49) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67921 2wse:A (3.49) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67922 2wse:A (3.49) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67923 2wse:A (3.49) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67924 2wse:A (3.49) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67925 2wse:A (3.49) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67926 2wse:A (3.49) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67927 2wse:A (3.49) BS37 PQN 1.97.1.12 GO:0000287 ... P05310 19923216
    67928 2wse:A (3.49) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67929 2wse:A (3.49) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67930 2wse:A (3.49) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67931 2wse:A (3.49) BS41 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    67932 2wse:A (3.49) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67933 2wse:A (3.49) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67934 2wse:A (3.49) BS44 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67935 2wse:B (3.49) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67936 2wse:B (3.49) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67937 2wse:B (3.49) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67938 2wse:B (3.49) BS04 SF4 1.97.1.12 GO:0000287 ... P05311 19923216
    67939 2wse:B (3.49) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67940 2wse:B (3.49) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67941 2wse:B (3.49) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67942 2wse:B (3.49) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67943 2wse:B (3.49) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67944 2wse:B (3.49) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67945 2wse:B (3.49) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67946 2wse:B (3.49) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67947 2wse:B (3.49) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67948 2wse:B (3.49) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67949 2wse:B (3.49) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67950 2wse:B (3.49) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67951 2wse:B (3.49) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67952 2wse:B (3.49) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67953 2wse:B (3.49) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67954 2wse:B (3.49) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67955 2wse:B (3.49) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67956 2wse:B (3.49) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67957 2wse:B (3.49) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67958 2wse:B (3.49) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67959 2wse:B (3.49) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67960 2wse:B (3.49) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67961 2wse:B (3.49) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67962 2wse:B (3.49) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67963 2wse:B (3.49) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67964 2wse:B (3.49) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67965 2wse:B (3.49) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67966 2wse:B (3.49) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67967 2wse:B (3.49) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67968 2wse:B (3.49) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67969 2wse:B (3.49) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67970 2wse:B (3.49) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67971 2wse:B (3.49) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67972 2wse:B (3.49) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67973 2wse:B (3.49) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67974 2wse:B (3.49) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67975 2wse:B (3.49) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67976 2wse:B (3.49) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67977 2wse:B (3.49) BS43 PQN 1.97.1.12 GO:0000287 ... P05311 19923216
    67978 2wse:B (3.49) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67979 2wse:B (3.49) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67980 2wse:B (3.49) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67981 2wse:B (3.49) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67982 2wse:B (3.49) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67983 2wse:B (3.49) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67984 2wse:C (3.49) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    67985 2wse:C (3.49) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 19923216
    67986 2wse:F (3.49) BS01 FRU ? GO:0009507 ... P12355 19923216
    67987 2wse:F (3.49) BS02 CLA ? GO:0009507 ... P12355 19923216
    67988 2wse:F (3.49) BS03 CLA ? GO:0009507 ... P12355 19923216
    67989 2wse:F (3.49) BS04 CLA ? GO:0009507 ... P12355 19923216
    67990 2wse:F (3.49) BS05 CLA ? GO:0009507 ... P12355 19923216
    67991 2wse:G (3.49) BS01 CLA ? GO:0009507 ... P12357 19923216
    67992 2wse:G (3.49) BS02 CLA ? GO:0009507 ... P12357 19923216
    67993 2wse:H (3.49) BS01 CLA ? GO:0009507 ... P22179 19923216
    67994 2wse:H (3.49) BS02 CLA ? GO:0009507 ... P22179 19923216
    67995 2wse:I (3.49) BS01 CLA ? GO:0009507 ... P17227 19923216
    67996 2wse:I (3.49) BS02 CLA ? GO:0009507 ... P17227 19923216
    67997 2wse:I (3.49) BS03 CLA ? GO:0009507 ... P17227 19923216
    67998 2wse:J (3.49) BS01 CLA ? GO:0009507 ... P17230 19923216
    67999 2wse:J (3.49) BS02 CLA ? GO:0009507 ... P17230 19923216
    68000 2wse:K (3.49) BS01 CLA ? GO:0009507 ... P36886 19923216

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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