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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    67601 2wpe:B (2.1) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67602 2wpe:B (2.1) BS02 WPE 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.86uM
    67603 2wpe:C (2.1) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67604 2wpe:C (2.1) BS02 WPE 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.86uM
    67605 2wpe:D (2.1) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67606 2wpe:D (2.1) BS02 WPE 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.86uM
    67607 2wpf:A (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67608 2wpf:A (1.9) BS02 WPF 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.23uM
    67609 2wpf:B (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67610 2wpf:B (1.9) BS02 WPF 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.23uM
    67611 2wpf:C (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67612 2wpf:C (1.9) BS02 WPF 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.23uM
    67613 2wpf:D (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 21851087
    67614 2wpf:D (1.9) BS02 WPF 1.8.1.12 GO:0000166 ... Q389T8 21851087 MOAD: ic50=0.23uM
    67615 2wpn:A (2.04) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    67616 2wpn:A (2.04) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    67617 2wpn:A (2.04) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    67618 2wpn:A (2.04) BS04 FSX 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    67619 2wpn:A (2.04) BS05 SBY 1.12.2.1 GO:0005515 ... Q72AS4 20026074
    67620 2wpu:A (1.92) BS01 KYT ? GO:0005576 ... P22629 20878805 MOAD: Kd<60nM
    67621 2wq5:A (1.65) BS01 MIY 3.1.1.4 GO:0004623 ... P15445 20211188 MOAD: Kd=180uM
    PDBbind: -logKd/Ki=3.74, Kd=180uM
    67622 2wq6:A (2.3) BS01 dna 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67623 2wq6:A (2.3) BS02 dna 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67624 2wq6:A (2.3) BS03 FAD 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67625 2wq7:A (2.0) BS01 dna 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67626 2wq7:A (2.0) BS02 dna 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67627 2wq7:A (2.0) BS03 FAD 4.1.99.3 GO:0000166 ... Q8SXK5 20166732
    67628 2wq8:A (2.19) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 21526835
    67629 2wq8:A (2.19) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 21526835
    67630 2wqd:A (2.4) BS01 CA 2.7.3.9 GO:0003824 ... P51183 19801641
    67631 2wqj:C (2.0) BS01 peptide ? GO:0003677 ... O15350 19815500
    67632 2wqj:C (2.0) BS02 peptide ? GO:0003677 ... O15350 19815500
    67633 2wqj:C (2.0) BS03 peptide ? GO:0003677 ... O15350 19815500
    67634 2wqj:K (2.0) BS01 peptide ? GO:0003677 ... O15350 19815500
    67635 2wqj:K (2.0) BS02 peptide ? GO:0003677 ... O15350 19815500
    67636 2wqj:Z (2.0) BS01 peptide ? GO:0003677 ... O15350 19815500
    67637 2wqj:Z (2.0) BS02 peptide ? GO:0003677 ... O15350 19815500
    67638 2wqj:Z (2.0) BS03 peptide ? GO:0003677 ... O15350 19815500
    67639 2wqj:Z (2.0) BS04 peptide ? GO:0003677 ... O15350 19815500
    67640 2wqj:Z (2.0) BS05 peptide ? GO:0003677 ... O15350 19815500
    67641 2wqk:A (1.5) BS01 SO4 3.1.3.5 GO:0000166 ... O67004 20054112
    67642 2wqk:B (1.5) BS01 SO4 3.1.3.5 GO:0000166 ... O67004 20054112
    67643 2wqn:A (2.3) BS01 ADP 2.7.11.34 GO:0000922 ... Q8TDX7 19941817
    67644 2wqy:A (2.1) BS01 AZI 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    67645 2wqy:A (2.1) BS02 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    67646 2wqy:A (2.1) BS03 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    67647 2wqy:C (2.1) BS01 HEM 1.3.5.1 GO:0005739 ... D0VWW3 N/A
    67648 2wqy:C (2.1) BS02 CBE 1.3.5.1 GO:0005739 ... D0VWW3 N/A
    67649 2wqy:D (2.1) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 N/A
    67650 2wqy:N (2.1) BS01 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    67651 2wqy:N (2.1) BS02 OAA 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    67652 2wqy:P (2.1) BS01 HEM 1.3.5.1 GO:0005739 ... D0VWW3 N/A
    67653 2wqy:P (2.1) BS02 CBE 1.3.5.1 GO:0005739 ... D0VWW3 N/A
    67654 2wqy:Q (2.1) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 N/A
    67655 2wr1:B (2.1) BS01 SIA 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    67656 2wr1:C (2.1) BS01 GAL 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    67657 2wr1:C (2.1) BS02 SIA 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    67658 2wr2:B (2.4) BS01 SIA 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    67659 2wr2:C (2.4) BS01 SIA 3.1.1.53 GO:0001681 ... D0VWP8 19805083
    67660 2wr3:A (2.5) BS01 SIA 3.1.1.53 GO:0001681 ... D0VWP9 19805083
    67661 2wr4:A (2.5) BS01 SIA 3.1.1.53 GO:0001681 ... D0VWP9 19805083
    67662 2wr7:A (2.5) BS01 SIA ? GO:0019031 ... Q67333 19805083
    67663 2wrb:A (3.1) BS01 SIA ? GO:0019031 ... Q67333 19805083
    67664 2wre:A (3.001) BS01 SIA ? GO:0005886 ... Q0A2X3 19805083
    67665 2wre:B (3.001) BS01 SIA ? GO:0005886 ... Q0A2X3 19805083
    67666 2wre:C (3.001) BS01 SIA ? GO:0005886 ... Q0A2X3 19805083
    67667 2wrf:D (3.1) BS01 SIA ? GO:0005886 ... Q67326 19805083
    67668 2wrf:F (3.1) BS01 SIA ? GO:0005886 ... Q67326 19805083
    67669 2wrg:J (3.0) BS01 GAL ? GO:0019031 ... Q9WFX3 19805083
    67670 2wrg:J (3.0) BS02 SIA ? GO:0019031 ... Q9WFX3 19805083
    67671 2wrg:M (3.0) BS01 GAL ? GO:0019031 ... Q9WFX3 19805083
    67672 2wrh:H (3.0) BS01 SIA ? GO:0019031 ... P26562 19805083
    67673 2wrh:J (3.0) BS01 SIA ? GO:0019031 ... P26562 19805083
    67674 2wrh:L (3.0) BS01 SIA ? GO:0019031 ... P26562 19805083
    67675 2ws3:A (3.2) BS01 FAD 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67676 2ws3:A (3.2) BS02 TEO 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67677 2ws3:B (3.2) BS01 FES 1.3.5.1 GO:0005515 ... P07014 N/A
    67678 2ws3:B (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    67679 2ws3:B (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    67680 2ws3:B (3.2) BS04 CBE 1.3.5.1 GO:0005515 ... P07014 N/A
    67681 2ws3:C (3.2) BS01 CBE 1.3.5.1 GO:0005886 ... P69054 N/A
    67682 2ws3:C (3.2) BS02 HEM 1.3.5.1 GO:0005886 ... P69054 N/A
    67683 2ws3:D (3.2) BS01 HEM 1.3.5.1 GO:0005886 ... P0AC44 N/A
    67684 2ws3:E (3.2) BS01 FAD 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67685 2ws3:E (3.2) BS02 TEO 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67686 2ws3:F (3.2) BS01 FES 1.3.5.1 GO:0005515 ... P07014 N/A
    67687 2ws3:F (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    67688 2ws3:F (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    67689 2ws3:F (3.2) BS04 CBE 1.3.5.1 GO:0005515 ... P07014 N/A
    67690 2ws3:G (3.2) BS01 CBE 1.3.5.1 GO:0005886 ... P69054 N/A
    67691 2ws3:G (3.2) BS02 HEM 1.3.5.1 GO:0005886 ... P69054 N/A
    67692 2ws3:H (3.2) BS01 HEM 1.3.5.1 GO:0005886 ... P0AC44 N/A
    67693 2ws3:I (3.2) BS01 FAD 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67694 2ws3:I (3.2) BS02 TEO 1.3.5.1 GO:0000104 ... P0AC41 N/A
    67695 2ws3:J (3.2) BS01 FES 1.3.5.1 GO:0005515 ... P07014 N/A
    67696 2ws3:J (3.2) BS02 SF4 1.3.5.1 GO:0005515 ... P07014 N/A
    67697 2ws3:J (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    67698 2ws3:J (3.2) BS04 CBE 1.3.5.1 GO:0005515 ... P07014 N/A
    67699 2ws3:K (3.2) BS01 CBE 1.3.5.1 GO:0005886 ... P69054 N/A
    67700 2ws3:K (3.2) BS02 HEM 1.3.5.1 GO:0005886 ... P69054 N/A
    67701 2ws3:L (3.2) BS01 HEM 1.3.5.1 GO:0005886 ... P0AC44 N/A
    67702 2wsa:A (1.6) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 20360736
    67703 2wsa:A (1.6) BS02 646 2.3.1.97 GO:0004379 ... Q4Q5S8 20360736 MOAD: Kd=1nM
    BindingDB: Ki=41nM, IC50=2nM
    67704 2wsc:1 (3.3) BS01 CLA ? GO:0003729 ... Q01667 19923216
    67705 2wsc:1 (3.3) BS02 CLA ? GO:0003729 ... Q01667 19923216
    67706 2wsc:1 (3.3) BS03 CLA ? GO:0003729 ... Q01667 19923216
    67707 2wsc:1 (3.3) BS04 CLA ? GO:0003729 ... Q01667 19923216
    67708 2wsc:1 (3.3) BS05 CLA ? GO:0003729 ... Q01667 19923216
    67709 2wsc:1 (3.3) BS06 CLA ? GO:0003729 ... Q01667 19923216
    67710 2wsc:1 (3.3) BS07 CLA ? GO:0003729 ... Q01667 19923216
    67711 2wsc:1 (3.3) BS08 CLA ? GO:0003729 ... Q01667 19923216
    67712 2wsc:1 (3.3) BS09 CLA ? GO:0003729 ... Q01667 19923216
    67713 2wsc:2 (3.3) BS01 CLA ? GO:0009416 ... Q41038 19923216
    67714 2wsc:2 (3.3) BS02 CLA ? GO:0009416 ... Q41038 19923216
    67715 2wsc:2 (3.3) BS03 CLA ? GO:0009416 ... Q41038 19923216
    67716 2wsc:2 (3.3) BS04 CLA ? GO:0009416 ... Q41038 19923216
    67717 2wsc:2 (3.3) BS05 CLA ? GO:0009416 ... Q41038 19923216
    67718 2wsc:2 (3.3) BS06 CLA ? GO:0009416 ... Q41038 19923216
    67719 2wsc:3 (3.3) BS01 CLA ? GO:0009507 ... C6TEX2 19923216
    67720 2wsc:3 (3.3) BS02 CLA ? GO:0009507 ... C6TEX2 19923216
    67721 2wsc:3 (3.3) BS03 CLA ? GO:0009507 ... C6TEX2 19923216
    67722 2wsc:3 (3.3) BS04 CLA ? GO:0009507 ... C6TEX2 19923216
    67723 2wsc:3 (3.3) BS05 CLA ? GO:0009507 ... C6TEX2 19923216
    67724 2wsc:3 (3.3) BS06 CLA ? GO:0009507 ... C6TEX2 19923216
    67725 2wsc:3 (3.3) BS07 CLA ? GO:0009507 ... C6TEX2 19923216
    67726 2wsc:3 (3.3) BS08 CLA ? GO:0009507 ... C6TEX2 19923216
    67727 2wsc:4 (3.3) BS01 CLA ? GO:0009416 ... Q9SQL2 19923216
    67728 2wsc:4 (3.3) BS02 CLA ? GO:0009416 ... Q9SQL2 19923216
    67729 2wsc:4 (3.3) BS03 CLA ? GO:0009416 ... Q9SQL2 19923216
    67730 2wsc:4 (3.3) BS04 CLA ? GO:0009416 ... Q9SQL2 19923216
    67731 2wsc:4 (3.3) BS05 CLA ? GO:0009416 ... Q9SQL2 19923216
    67732 2wsc:4 (3.3) BS06 CLA ? GO:0009416 ... Q9SQL2 19923216
    67733 2wsc:4 (3.3) BS07 CLA ? GO:0009416 ... Q9SQL2 19923216
    67734 2wsc:4 (3.3) BS08 CLA ? GO:0009416 ... Q9SQL2 19923216
    67735 2wsc:4 (3.3) BS09 CLA ? GO:0009416 ... Q9SQL2 19923216
    67736 2wsc:4 (3.3) BS10 CLA ? GO:0009416 ... Q9SQL2 19923216
    67737 2wsc:4 (3.3) BS11 CLA ? GO:0009416 ... Q9SQL2 19923216
    67738 2wsc:A (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67739 2wsc:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67740 2wsc:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67741 2wsc:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67742 2wsc:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67743 2wsc:A (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67744 2wsc:A (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67745 2wsc:A (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67746 2wsc:A (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67747 2wsc:A (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67748 2wsc:A (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67749 2wsc:A (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67750 2wsc:A (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67751 2wsc:A (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67752 2wsc:A (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67753 2wsc:A (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67754 2wsc:A (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67755 2wsc:A (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67756 2wsc:A (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67757 2wsc:A (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67758 2wsc:A (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67759 2wsc:A (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67760 2wsc:A (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67761 2wsc:A (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67762 2wsc:A (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67763 2wsc:A (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67764 2wsc:A (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67765 2wsc:A (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67766 2wsc:A (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67767 2wsc:A (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67768 2wsc:A (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67769 2wsc:A (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67770 2wsc:A (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67771 2wsc:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67772 2wsc:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67773 2wsc:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67774 2wsc:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67775 2wsc:A (3.3) BS38 PQN 1.97.1.12 GO:0000287 ... P05310 19923216
    67776 2wsc:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67777 2wsc:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67778 2wsc:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67779 2wsc:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67780 2wsc:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67781 2wsc:A (3.3) BS44 SF4 1.97.1.12 GO:0000287 ... P05310 19923216
    67782 2wsc:A (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67783 2wsc:A (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    67784 2wsc:B (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67785 2wsc:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67786 2wsc:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67787 2wsc:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67788 2wsc:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67789 2wsc:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67790 2wsc:B (3.3) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67791 2wsc:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67792 2wsc:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67793 2wsc:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67794 2wsc:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67795 2wsc:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67796 2wsc:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67797 2wsc:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67798 2wsc:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67799 2wsc:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    67800 2wsc:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 19923216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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