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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    66001 2vxj:E (1.9) BS01 GLC ? GO:0005737 ... Q05097 18762193
    66002 2vxj:E (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66003 2vxj:E (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66004 2vxj:E (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66005 2vxj:F (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66006 2vxj:F (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66007 2vxj:F (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66008 2vxj:F (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66009 2vxj:G (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66010 2vxj:G (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66011 2vxj:G (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66012 2vxj:H (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66013 2vxj:H (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66014 2vxj:H (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66015 2vxj:I (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66016 2vxj:I (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66017 2vxj:I (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66018 2vxj:I (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66019 2vxj:J (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66020 2vxj:J (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66021 2vxj:J (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66022 2vxj:K (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66023 2vxj:K (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66024 2vxj:K (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66025 2vxj:L (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66026 2vxj:L (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66027 2vxj:L (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66028 2vxj:L (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66029 2vxj:M (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66030 2vxj:M (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66031 2vxj:M (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66032 2vxj:M (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66033 2vxj:N (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66034 2vxj:N (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66035 2vxj:N (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66036 2vxj:O (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66037 2vxj:O (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66038 2vxj:O (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66039 2vxj:P (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66040 2vxj:P (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66041 2vxj:P (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66042 2vxj:Q (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66043 2vxj:Q (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66044 2vxj:Q (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66045 2vxj:Q (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66046 2vxj:R (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66047 2vxj:R (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66048 2vxj:R (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66049 2vxj:R (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66050 2vxj:S (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66051 2vxj:S (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66052 2vxj:S (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66053 2vxj:S (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66054 2vxj:T (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66055 2vxj:T (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66056 2vxj:T (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66057 2vxj:U (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66058 2vxj:U (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66059 2vxj:U (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66060 2vxj:V (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66061 2vxj:V (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66062 2vxj:V (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66063 2vxj:V (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66064 2vxj:W (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    66065 2vxj:W (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    66066 2vxj:W (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66067 2vxj:W (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    66068 2vxj:X (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    66069 2vxj:X (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    66070 2vxj:X (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    66071 2vxl:A (2.7) BS01 MN 2.4.1.87 GO:0005975 ... P14769 18782853
    66072 2vxl:A (2.7) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 18782853
    66073 2vxn:A (0.82) BS01 PGH 5.3.1.1 GO:0004807 ... P48499 20235230 PDBbind: -logKd/Ki=5.00, Kd=10uM
    66074 2vxn:A (0.82) BS02 PGA 5.3.1.1 GO:0004807 ... P48499 20235230
    66075 2vxo:A (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    66076 2vxo:B (2.5) BS01 XMP 6.3.5.2 GO:0003921 ... P49915 23816837
    66077 2vya:A (2.75) BS01 PF7 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 18753625
    66078 2vya:B (2.75) BS01 PF7 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 18753625
    66079 2vyc:A (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66080 2vyc:B (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66081 2vyc:C (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66082 2vyc:D (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66083 2vyc:E (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66084 2vyc:F (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66085 2vyc:G (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66086 2vyc:H (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66087 2vyc:I (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66088 2vyc:J (2.4) BS01 PLP 4.1.1.19 GO:0003824 ... P28629 19298070
    66089 2vye:A (4.1) BS01 dna 3.6.4.12 GO:0003677 ... Q5KU75 19074952 PDBbind: Kd=46.9nM
    66090 2vye:B (4.1) BS01 dna 3.6.4.12 GO:0003677 ... Q5KU75 19074952 PDBbind: Kd=46.9nM
    66091 2vyn:A (2.2) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66092 2vyn:B (2.2) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66093 2vyn:C (2.2) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66094 2vyo:A (1.5) BS01 CA 3.5.1.41 GO:0004099 ... Q8SU65 19472335
    66095 2vyp:A (2.35) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    66096 2vyp:A (2.35) BS02 RH9 3.6.4.- GO:0000287 ... P68135 19035596
    66097 2vyp:B (2.35) BS01 RH9 3.6.4.- GO:0000287 ... P68135 19035596
    66098 2vyp:B (2.35) BS02 CA 3.6.4.- GO:0000287 ... P68135 19035596
    66099 2vyp:B (2.35) BS03 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    66100 2vyp:B (2.35) BS04 CA 3.6.4.- GO:0000287 ... P68135 19035596
    66101 2vyt:A (1.9) BS01 MLZ ? GO:0005634 ... Q9UQR0 18706910 MOAD: Kd=1.84mM
    PDBbind: -logKd/Ki=2.74, Kd=1.84mM
    66102 2vyt:B (1.9) BS01 MLZ ? GO:0005634 ... Q9UQR0 18706910 MOAD: Kd=1.84mM
    66103 2vyv:A (2.38) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66104 2vyv:B (2.38) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66105 2vyv:C (2.38) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 19542219
    66106 2vz1:A (1.91) BS01 CA 1.1.3.9 GO:0005576 ... P0CS93 18771294
    66107 2vz2:A (2.3) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66108 2vz2:A (2.3) BS02 MFG 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66109 2vz2:A (2.3) BS03 C15 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66110 2vz2:B (2.3) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66111 2vz2:B (2.3) BS02 MFG 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66112 2vz2:B (2.3) BS03 C15 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 19053775
    66113 2vz3:A (1.9) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    66114 2vz3:A (1.9) BS02 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    66115 2vz3:A (1.9) BS03 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    66116 2vz5:A (1.738) BS01 ZN ? GO:0001650 ... O14907 N/A
    66117 2vzb:A (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    66118 2vzb:A (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    66119 2vzb:A (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    66120 2vzb:B (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    66121 2vzb:B (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    66122 2vzb:B (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    66123 2vzb:C (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    66124 2vzb:C (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    66125 2vzb:C (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    66126 2vzb:D (2.3) BS01 MG ? GO:0004322 ... Q5LAA6 22020642
    66127 2vzb:D (2.3) BS02 FE ? GO:0004322 ... Q5LAA6 22020642
    66128 2vzb:D (2.3) BS03 FE ? GO:0004322 ... Q5LAA6 22020642
    66129 2vze:A (2.45) BS01 AMP 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    66130 2vze:B (2.45) BS01 AMP 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    66131 2vze:C (2.45) BS01 MG 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    66132 2vze:C (2.45) BS02 AMP 6.2.1.2
    6.2.1.25    		 GO:0004321 ... Q08AH3 19345228
    66133 2vzy:A (2.0) BS01 ACT 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66134 2vzy:B (2.0) BS01 ACT 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66135 2vzy:C (2.0) BS01 ACT 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66136 2vzy:D (2.0) BS01 ACT 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66137 2vzy:D (2.0) BS02 FLC 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66138 2vzy:D (2.0) BS03 FLC 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66139 2vzz:A (2.3) BS01 SCA 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66140 2vzz:B (2.3) BS01 SCA 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66141 2vzz:C (2.3) BS01 SCA 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66142 2vzz:D (2.3) BS01 SCA 2.8.1.- GO:0005737 ... P9WQG7 18997321
    66143 2w05:A (1.9) BS01 FRT 2.7.11.22 GO:0000082 ... P24941 18815031 MOAD: ic50=0.001uM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    66144 2w06:A (2.04) BS01 FRV 2.7.11.22 GO:0000082 ... P24941 18815031 PDBbind: -logKd/Ki=7.08, IC50=83nM
    66145 2w08:A (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    66146 2w08:A (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    66147 2w08:A (1.7) BS03 TPO ? GO:0001849 ... P02743 19372378 MOAD: Kd=380uM
    PDBbind: -logKd/Ki=3.42, Kd=380uM
    66148 2w08:B (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    66149 2w08:B (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    66150 2w08:B (1.7) BS03 TPO ? GO:0001849 ... P02743 19372378 MOAD: Kd=380uM
    66151 2w08:C (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    66152 2w08:C (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    66153 2w08:C (1.7) BS03 TPO ? GO:0001849 ... P02743 19372378 MOAD: Kd=380uM
    66154 2w08:D (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    66155 2w08:D (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    66156 2w08:D (1.7) BS03 TPO ? GO:0001849 ... P02743 19372378 MOAD: Kd=380uM
    66157 2w08:E (1.7) BS01 CA ? GO:0001849 ... P02743 19372378
    66158 2w08:E (1.7) BS02 CA ? GO:0001849 ... P02743 19372378
    66159 2w08:E (1.7) BS03 TPO ? GO:0001849 ... P02743 19372378 MOAD: Kd=380uM
    66160 2w09:A (1.57) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 19190730
    66161 2w09:A (1.57) BS02 CM9 1.14.15.36 GO:0004497 ... P9WPP9 19190730 MOAD: Kd=35.4uM
    66162 2w0a:A (1.6) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 19190730
    66163 2w0a:A (1.6) BS02 CII 1.14.15.36 GO:0004497 ... P9WPP9 19190730
    66164 2w0b:A (1.56) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 19190730
    66165 2w0b:A (1.56) BS02 CMW 1.14.15.36 GO:0004497 ... P9WPP9 19190730 MOAD: Kd=58.3uM
    66166 2w0c:A (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66167 2w0c:B (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66168 2w0c:C (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66169 2w0c:D (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66170 2w0c:E (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66171 2w0c:F (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66172 2w0c:G (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66173 2w0c:H (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66174 2w0c:I (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66175 2w0c:J (7.0) BS01 CA ? GO:0019028 ... P15794 18775333
    66176 2w0c:L (7.0) BS01 CA ? GO:0044423 ... Q9XJR3 18775333
    66177 2w0d:A (2.0) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66178 2w0d:A (2.0) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66179 2w0d:A (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66180 2w0d:A (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66181 2w0d:A (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66182 2w0d:A (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    66183 2w0d:A (2.0) BS07 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    66184 2w0d:B (2.0) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66185 2w0d:B (2.0) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66186 2w0d:B (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66187 2w0d:B (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66188 2w0d:B (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66189 2w0d:B (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    66190 2w0d:C (2.0) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66191 2w0d:C (2.0) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66192 2w0d:C (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66193 2w0d:C (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66194 2w0d:C (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66195 2w0d:C (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    66196 2w0d:D (2.0) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66197 2w0d:D (2.0) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 19239231
    66198 2w0d:D (2.0) BS03 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66199 2w0d:D (2.0) BS04 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    66200 2w0d:D (2.0) BS05 CA 3.4.24.65 GO:0004222 ... P39900 19239231
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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