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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    594001 9f8x:C (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    594002 9f8x:C (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    594003 9f8x:C (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    594004 9f8x:D (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    594005 9f8x:D (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    594006 9f8x:D (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    594007 9f8x:D (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    594008 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    594009 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    594010 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    594011 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    594012 9fbv:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    594013 9fbv:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    594014 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    594015 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    594016 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    594017 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    594018 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    594019 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    594020 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    594021 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    594022 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    594023 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    594024 9fbv:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    594025 9fbv:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    594026 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    594027 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    594028 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    594029 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    594030 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    594031 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    594032 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    594033 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    594034 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    594035 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    594036 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    594037 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    594038 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    594039 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    594040 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    594041 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    594042 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    594043 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    594044 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    594045 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    594046 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    594047 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    594048 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    594049 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    594050 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    594051 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    594052 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    594053 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    594054 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    594055 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    594056 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    594057 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    594058 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    594059 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    594060 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    594061 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    594062 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    594063 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    594064 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    594065 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    594066 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    594067 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    594068 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    594069 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    594070 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    594071 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    594072 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    594073 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    594074 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594075 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594076 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594077 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594078 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594079 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594080 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594081 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    594082 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    594083 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    594084 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    594085 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    594086 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    594087 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    594088 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    594089 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    594090 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    594091 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    594092 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    594093 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    594094 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    594095 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    594096 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    594097 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    594098 9ffb:B (3.59) BS01 dna N/A GO:0005515 ... B0I564 N/A
    594099 9ffb:B (3.59) BS02 dna N/A GO:0005515 ... B0I564 N/A
    594100 9fff:B (3.68) BS01 dna N/A GO:0005515 ... B0I564 N/A
    594101 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    594102 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    594103 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    594104 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    594105 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    594106 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    594107 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    594108 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    594109 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    594110 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    594111 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    594112 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    594113 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    594114 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    594115 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    594116 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    594117 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    594118 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    594119 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    594120 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    594121 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    594122 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    594123 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    594124 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    594125 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    594126 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    594127 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    594128 9fh9:D (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    594129 9fh9:D (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    594130 9fh9:D (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    594131 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    594132 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    594133 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    594134 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    594135 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    594136 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    594137 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    594138 9fh9:H (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    594139 9fh9:H (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    594140 9fh9:H (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    594141 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    594142 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    594143 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    594144 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    594145 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    594146 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    594147 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    594148 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    594149 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    594150 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    594151 9fmd:1 (3.3) BS01 rna N/A GO:0003014 ... Q9H875 38925148
    594152 9fmd:1 (3.3) BS02 rna N/A GO:0003014 ... Q9H875 38925148
    594153 9fmd:32 (3.3) BS01 rna N/A GO:0003723 ... Q9Y421 38925148
    594154 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    594155 9fmd:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    594156 9fmd:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    594157 9fmd:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    594158 9fmd:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    594159 9fmd:A (3.3) BS05 rna N/A GO:0000244 ... Q6P2Q9 38925148
    594160 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    594161 9fmd:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 38925148
    594162 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    594163 9fmd:E (3.3) BS01 rna N/A GO:0000375 ... Q96DI7 38925148
    594164 9fmd:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 38925148
    594165 9fmd:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 38925148
    594166 9fmd:L (3.3) BS03 rna N/A GO:0000077 ... Q99459 38925148
    594167 9fmd:M (3.3) BS01 rna N/A GO:0000398 ... O95926 38925148
    594168 9fmd:M (3.3) BS02 rna N/A GO:0000398 ... O95926 38925148
    594169 9fmd:N (3.3) BS01 rna N/A GO:0000398 ... P41223 38925148
    594170 9fmd:N (3.3) BS02 rna N/A GO:0000398 ... P41223 38925148
    594171 9fmd:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 38925148
    594172 9fmd:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 38925148
    594173 9fmd:N (3.3) BS05 ZN N/A GO:0000398 ... P41223 38925148
    594174 9fmd:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    594175 9fmd:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    594176 9fmd:O (3.3) BS03 ZN N/A GO:0000398 ... Q9NW64 38925148
    594177 9fmd:O (3.3) BS04 ZN N/A GO:0000398 ... Q9NW64 38925148
    594178 9fmd:O (3.3) BS05 ZN N/A GO:0000398 ... Q9NW64 38925148
    594179 9fmd:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    594180 9fmd:P (3.3) BS02 rna N/A GO:0000398 ... Q9P013 38925148
    594181 9fmd:P (3.3) BS03 rna N/A GO:0000398 ... Q9P013 38925148
    594182 9fmd:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 38925148
    594183 9fmd:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 38925148
    594184 9fmd:SR (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 38925148
    594185 9fmd:SR (3.3) BS02 rna N/A GO:0000398 ... Q9UQ35 38925148
    594186 9fmd:T (3.3) BS01 rna N/A GO:0000398 ... O43660 38925148
    594187 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    594188 9fmd:W (3.3) BS01 rna N/A GO:0000398 ... O60508 38925148
    594189 9fmd:W (3.3) BS02 rna N/A GO:0000398 ... O60508 38925148
    594190 9fmd:a (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    594191 9fmd:b (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    594192 9fmd:c (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    594193 9fmd:d (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    594194 9fmd:e (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    594195 9fmd:f (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    594196 9fmd:g (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    594197 9fmd:h (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    594198 9fmd:i (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    594199 9fmd:j (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    594200 9fmd:k (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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