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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593801 9eo4:B (2.66) BS02 Y01 N/A GO:0001504 ... Q01959 39112703
    593802 9eo4:B (2.66) BS03 CLR N/A GO:0001504 ... Q01959 39112703
    593803 9eo4:B (2.66) BS04 CLR N/A GO:0001504 ... Q01959 39112703
    593804 9eo4:B (2.66) BS05 NA N/A GO:0001504 ... Q01959 39112703
    593805 9eo4:B (2.66) BS06 COC N/A GO:0001504 ... Q01959 39112703
    593806 9eo8:BBB (1.76) BS01 NH3 4.6.1.18 GO:0004519 ... P61824 38727007
    593807 9eo8:BBB (1.76) BS02 PT 4.6.1.18 GO:0004519 ... P61824 38727007
    593808 9eoc:B (3.3) BS01 MG ? GO:0005515 ... Q96SY0 38823386
    593809 9eqf:A (1.6) BS01 FE2 N/A GO:0016020 ... Q6WZB0 39114090
    593810 9eqf:A (1.6) BS02 ARG N/A GO:0016020 ... Q6WZB0 39114090
    593811 9erx:R (2.9) BS01 A1H66 N/A GO:0002866 ... P21554 38826401
    593812 9est:A (1.9) BS01 CA 3.4.21.36 GO:0004252 ... P00772 1998677
    593813 9est:A (1.9) BS02 IBR 3.4.21.36 GO:0004252 ... P00772 1998677
    593814 9etn:A (1.584) BS01 CA N/A GO:0005515 ... Q8R555 39029889
    593815 9etn:A (1.584) BS02 CA N/A GO:0005515 ... Q8R555 39029889
    593816 9etn:A (1.584) BS03 CA N/A GO:0005515 ... Q8R555 39029889
    593817 9etn:A (1.584) BS04 CA N/A GO:0005515 ... Q8R555 39029889
    593818 9etn:A (1.584) BS05 CA N/A GO:0005515 ... Q8R555 39029889
    593819 9etn:A (1.584) BS06 CA N/A GO:0005515 ... Q8R555 39029889
    593820 9etn:A (1.584) BS07 K N/A GO:0005515 ... Q8R555 39029889
    593821 9etn:A (1.584) BS08 K N/A GO:0005515 ... Q8R555 39029889
    593822 9etn:A (1.584) BS09 K N/A GO:0005515 ... Q8R555 39029889
    593823 9etn:A (1.584) BS10 NA N/A GO:0005515 ... Q8R555 39029889
    593824 9evx:A (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 38900892
    593825 9evx:A (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593826 9evx:A (1.71) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593827 9evx:A (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593828 9evx:A (1.71) BS05 OEX 1.10.3.9 GO:0005506 ... P0A444 38900892
    593829 9evx:A (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    593830 9evx:A (1.71) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593831 9evx:A (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593832 9evx:A (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    593833 9evx:A (1.71) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 38900892
    593834 9evx:B (1.71) BS01 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593835 9evx:B (1.71) BS02 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593836 9evx:B (1.71) BS03 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593837 9evx:B (1.71) BS04 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593838 9evx:B (1.71) BS05 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593839 9evx:B (1.71) BS06 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593840 9evx:B (1.71) BS07 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593841 9evx:B (1.71) BS08 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593842 9evx:B (1.71) BS09 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593843 9evx:B (1.71) BS10 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593844 9evx:B (1.71) BS11 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593845 9evx:B (1.71) BS12 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593846 9evx:B (1.71) BS13 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593847 9evx:B (1.71) BS14 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593848 9evx:B (1.71) BS15 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593849 9evx:B (1.71) BS16 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593850 9evx:C (1.71) BS01 OEX ? GO:0005737 ... Q8DIF8 38900892
    593851 9evx:C (1.71) BS02 CLA ? GO:0005737 ... Q8DIF8 38900892
    593852 9evx:C (1.71) BS03 CLA ? GO:0005737 ... Q8DIF8 38900892
    593853 9evx:C (1.71) BS04 CLA ? GO:0005737 ... Q8DIF8 38900892
    593854 9evx:C (1.71) BS05 CLA ? GO:0005737 ... Q8DIF8 38900892
    593855 9evx:C (1.71) BS06 CLA ? GO:0005737 ... Q8DIF8 38900892
    593856 9evx:C (1.71) BS07 CLA ? GO:0005737 ... Q8DIF8 38900892
    593857 9evx:C (1.71) BS08 CLA ? GO:0005737 ... Q8DIF8 38900892
    593858 9evx:C (1.71) BS09 CLA ? GO:0005737 ... Q8DIF8 38900892
    593859 9evx:C (1.71) BS10 CLA ? GO:0005737 ... Q8DIF8 38900892
    593860 9evx:C (1.71) BS11 CLA ? GO:0005737 ... Q8DIF8 38900892
    593861 9evx:C (1.71) BS12 CLA ? GO:0005737 ... Q8DIF8 38900892
    593862 9evx:C (1.71) BS13 CLA ? GO:0005737 ... Q8DIF8 38900892
    593863 9evx:C (1.71) BS14 CLA ? GO:0005737 ... Q8DIF8 38900892
    593864 9evx:D (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593865 9evx:D (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593866 9evx:D (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593867 9evx:D (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593868 9evx:D (1.71) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593869 9evx:D (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593870 9evx:D (1.71) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593871 9evx:D (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593872 9evx:D (1.71) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593873 9evx:E (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    593874 9evx:F (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    593875 9evx:H (1.71) BS01 CLA ? GO:0009523 ... Q8DJ43 38900892
    593876 9evx:H (1.71) BS02 CLA ? GO:0009523 ... Q8DJ43 38900892
    593877 9evx:H (1.71) BS03 CLA ? GO:0009523 ... Q8DJ43 38900892
    593878 9evx:H (1.71) BS04 CLA ? GO:0009523 ... Q8DJ43 38900892
    593879 9evx:I (1.71) BS01 CLA ? GO:0005737 ... Q8DJZ6 38900892
    593880 9evx:K (1.71) BS01 peptide ? GO:0005737 ... Q9F1K9 38900892
    593881 9evx:K (1.71) BS02 CLA ? GO:0005737 ... Q9F1K9 38900892
    593882 9evx:K (1.71) BS03 CLA ? GO:0005737 ... Q9F1K9 38900892
    593883 9evx:Z (1.71) BS01 peptide ? GO:0009523 ... Q8DHJ2 38900892
    593884 9evx:a (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 38900892
    593885 9evx:a (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593886 9evx:a (1.71) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593887 9evx:a (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593888 9evx:a (1.71) BS05 OEX 1.10.3.9 GO:0005506 ... P0A444 38900892
    593889 9evx:a (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    593890 9evx:a (1.71) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593891 9evx:a (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 38900892
    593892 9evx:a (1.71) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 38900892
    593893 9evx:a (1.71) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 38900892
    593894 9evx:b (1.71) BS01 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593895 9evx:b (1.71) BS02 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593896 9evx:b (1.71) BS03 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593897 9evx:b (1.71) BS04 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593898 9evx:b (1.71) BS05 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593899 9evx:b (1.71) BS06 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593900 9evx:b (1.71) BS07 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593901 9evx:b (1.71) BS08 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593902 9evx:b (1.71) BS09 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593903 9evx:b (1.71) BS10 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593904 9evx:b (1.71) BS11 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593905 9evx:b (1.71) BS12 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593906 9evx:b (1.71) BS13 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593907 9evx:b (1.71) BS14 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593908 9evx:b (1.71) BS15 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593909 9evx:b (1.71) BS16 CLA ? GO:0009523 ... Q8DIQ1 38900892
    593910 9evx:c (1.71) BS01 OEX ? GO:0005737 ... Q8DIF8 38900892
    593911 9evx:c (1.71) BS02 CLA ? GO:0005737 ... Q8DIF8 38900892
    593912 9evx:c (1.71) BS03 CLA ? GO:0005737 ... Q8DIF8 38900892
    593913 9evx:c (1.71) BS04 CLA ? GO:0005737 ... Q8DIF8 38900892
    593914 9evx:c (1.71) BS05 CLA ? GO:0005737 ... Q8DIF8 38900892
    593915 9evx:c (1.71) BS06 CLA ? GO:0005737 ... Q8DIF8 38900892
    593916 9evx:c (1.71) BS07 CLA ? GO:0005737 ... Q8DIF8 38900892
    593917 9evx:c (1.71) BS08 CLA ? GO:0005737 ... Q8DIF8 38900892
    593918 9evx:c (1.71) BS09 CLA ? GO:0005737 ... Q8DIF8 38900892
    593919 9evx:c (1.71) BS10 CLA ? GO:0005737 ... Q8DIF8 38900892
    593920 9evx:c (1.71) BS11 CLA ? GO:0005737 ... Q8DIF8 38900892
    593921 9evx:c (1.71) BS12 CLA ? GO:0005737 ... Q8DIF8 38900892
    593922 9evx:c (1.71) BS13 CLA ? GO:0005737 ... Q8DIF8 38900892
    593923 9evx:c (1.71) BS14 CLA ? GO:0005737 ... Q8DIF8 38900892
    593924 9evx:d (1.71) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593925 9evx:d (1.71) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593926 9evx:d (1.71) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593927 9evx:d (1.71) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593928 9evx:d (1.71) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593929 9evx:d (1.71) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593930 9evx:d (1.71) BS07 BCT 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593931 9evx:d (1.71) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593932 9evx:d (1.71) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 38900892
    593933 9evx:e (1.71) BS01 HEM ? GO:0005506 ... Q8DIP0 38900892
    593934 9evx:f (1.71) BS01 HEM ? GO:0005506 ... Q8DIN9 38900892
    593935 9evx:h (1.71) BS01 CLA ? GO:0009523 ... Q8DJ43 38900892
    593936 9evx:h (1.71) BS02 CLA ? GO:0009523 ... Q8DJ43 38900892
    593937 9evx:h (1.71) BS03 CLA ? GO:0009523 ... Q8DJ43 38900892
    593938 9evx:h (1.71) BS04 CLA ? GO:0009523 ... Q8DJ43 38900892
    593939 9evx:i (1.71) BS01 CLA ? GO:0005737 ... Q8DJZ6 38900892
    593940 9evx:j (1.71) BS01 peptide ? GO:0009523 ... P59087 38900892
    593941 9evx:k (1.71) BS01 peptide ? GO:0005737 ... Q9F1K9 38900892
    593942 9evx:k (1.71) BS02 CLA ? GO:0005737 ... Q9F1K9 38900892
    593943 9evx:k (1.71) BS03 CLA ? GO:0005737 ... Q9F1K9 38900892
    593944 9evx:z (1.71) BS01 peptide ? GO:0009523 ... Q8DHJ2 38900892
    593945 9ex0:A (1.45) BS01 NA N/A GO:0003796 ... P00698 38842919
    593946 9ex0:A (1.45) BS02 A1ICR N/A GO:0003796 ... P00698 38842919
    593947 9ex0:A (1.45) BS03 VO4 N/A GO:0003796 ... P00698 38842919
    593948 9ex1:A (1.785) BS01 A1H8D N/A GO:0003796 ... P00698 38842919
    593949 9ex2:A (1.172) BS01 NA N/A GO:0003796 ... P00698 38842919
    593950 9ex2:A (1.172) BS02 VO4 N/A GO:0003796 ... P00698 38842919
    593951 9ex2:A (1.172) BS03 A1H8D N/A GO:0003796 ... P00698 38842919
    593952 9ex2:A (1.172) BS04 A1H8D N/A GO:0003796 ... P00698 38842919
    593953 9ex2:A (1.172) BS05 VO4 N/A GO:0003796 ... P00698 38842919
    593954 9ex2:A (1.172) BS06 VO4 N/A GO:0003796 ... P00698 38842919
    593955 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    593956 9ezj:A (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    593957 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    593958 9ezj:B (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    593959 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    593960 9ezj:C (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    593961 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 N/A
    593962 9ezj:D (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 N/A
    593963 9f0f:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    593964 9f0f:A (2.1) BS02 FE 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    593965 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 N/A
    593966 9f14:A (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    593967 9f14:B (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    593968 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593969 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593970 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593971 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593972 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593973 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593974 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593975 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593976 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593977 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593978 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593979 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593980 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593981 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593982 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593983 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593984 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593985 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593986 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593987 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593988 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593989 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593990 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593991 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    593992 9f8x:A (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    593993 9f8x:A (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    593994 9f8x:A (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    593995 9f8x:A (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    593996 9f8x:B (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    593997 9f8x:B (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    593998 9f8x:B (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    593999 9f8x:B (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    594000 9f8x:C (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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