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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593601 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    593602 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    593603 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    593604 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    593605 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    593606 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    593607 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    593608 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    593609 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    593610 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    593611 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    593612 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    593613 9bdp:AS18 (3.7) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    593614 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    593615 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    593616 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    593617 9bdp:AS24 (3.7) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    593618 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    593619 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    593620 9bdp:AS29 (3.7) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    593621 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    593622 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    593623 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    593624 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    593625 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    593626 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    593627 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    593628 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    593629 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    593630 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    593631 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    593632 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    593633 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    593634 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    593635 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    593636 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    593637 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    593638 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    593639 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    593640 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    593641 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    593642 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    593643 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    593644 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    593645 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    593646 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    593647 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    593648 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    593649 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    593650 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    593651 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    593652 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    593653 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    593654 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    593655 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    593656 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    593657 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    593658 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    593659 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    593660 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    593661 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    593662 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    593663 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 N/A
    593664 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    593665 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    593666 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    593667 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    593668 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287
    593669 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    593670 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0004459 ... P00338 38925013
    593671 9bk3:D (2.4) BS01 A1AR0 N/A GO:0004459 ... P00338 38925013
    593672 9bkj:R (2.59) BS01 peptide ? GO:0001764 ... P32238 39083706
    593673 9bkk:R (2.51) BS01 peptide ? GO:0001764 ... P32238 39083706
    593674 9bkm:A (2.08) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    593675 9bkm:A (2.08) BS02 A1AQM N/A GO:0004151 ... Q02127 38889244
    593676 9bkn:A (1.3) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    593677 9bkn:A (1.3) BS02 A1AQK N/A GO:0004151 ... Q02127 38889244
    593678 9bko:A (1.44) BS01 FMN N/A GO:0004151 ... Q02127 38889244
    593679 9bko:A (1.44) BS02 A1AQL N/A GO:0004151 ... Q02127 38889244
    593680 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    593681 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    593682 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    593683 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    593684 9bn8:A (1.35) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    593685 9bn8:A (1.35) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    593686 9bn9:A (1.23) BS01 UMA 6.3.2.9 GO:0005515 ... P14900 N/A
    593687 9bn9:A (1.23) BS02 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    593688 9bn9:A (1.23) BS03 A1AQS 6.3.2.9 GO:0005515 ... P14900 N/A
    593689 9bnq:A (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    593690 9bnq:B (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    593691 9bnq:C (1.09) BS01 A1AQU N/A GO:0001516 ... P14174 38977403
    593692 9bnr:A (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    593693 9bnr:B (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    593694 9bnr:C (1.53) BS01 A1AQT N/A GO:0001516 ... P14174 38977403
    593695 9bp6:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    593696 9bp6:B (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    593697 9bp6:I (3.1) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    593698 9bp6:Q (3.1) BS01 G2P ? GO:0000226 ... P07437 N/A
    593699 9brd:A (3.5) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    593700 9brd:a (3.5) BS01 BMA N/A GO:0000220 ... P25286 38900912
    593701 9brd:a (3.5) BS02 MAN N/A GO:0000220 ... P25286 38900912
    593702 9brd:a (3.5) BS03 GLC N/A GO:0000220 ... P25286 38900912
    593703 9brd:a (3.5) BS04 GLC N/A GO:0000220 ... P25286 38900912
    593704 9brd:a (3.5) BS05 WJP N/A GO:0000220 ... P25286 38900912
    593705 9brd:a (3.5) BS06 LP3 N/A GO:0000220 ... P25286 38900912
    593706 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593707 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593708 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593709 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593710 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593711 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593712 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593713 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593714 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593715 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593716 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593717 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593718 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593719 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593720 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593721 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593722 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593723 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    593724 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593725 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593726 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593727 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    593728 9c3d:A (1.85) BS01 ZN N/A GO:0008800 ... C6W709 N/A
    593729 9c3d:A (1.85) BS02 ZN N/A GO:0008800 ... C6W709 N/A
    593730 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    593731 9c4o:A (1.99) BS02 PQQ N/A GO:0009279 ... P76115 N/A
    593732 9c8s:A (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    593733 9c8s:B (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    593734 9c8s:C (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    593735 9ca2:A (2.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1932029
    593736 9cgt:A (2.5) BS01 Z9E 2.4.1.19 GO:0003824 ... P30920 9738912
    593737 9cgt:A (2.5) BS02 4SG 2.4.1.19 GO:0003824 ... P30920 9738912
    593738 9cgt:A (2.5) BS03 GLC 2.4.1.19 GO:0003824 ... P30920 9738912
    593739 9cgt:A (2.5) BS04 4SG 2.4.1.19 GO:0003824 ... P30920 9738912
    593740 9cgt:A (2.5) BS05 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    593741 9cgt:A (2.5) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    593742 9cl9:A (5.04) BS01 rna N/A GO:0000455 ... P37765 N/A
    593743 9cl9:D (5.04) BS01 rna N/A GO:0000027 ... P60438 N/A
    593744 9cl9:E (5.04) BS01 rna N/A GO:0001070 ... P60723 N/A
    593745 9cl9:J (5.04) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    593746 9cl9:Q (5.04) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    593747 9cl9:R (5.04) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    593748 9cl9:S (5.04) BS01 rna N/A GO:0002181 ... P61175 N/A
    593749 9cl9:T (5.04) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    593750 9cl9:U (5.04) BS01 rna N/A GO:0000027 ... P60624 N/A
    593751 9cl9:Y (5.04) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    593752 9cmz:A (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    593753 9cmz:B (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    593754 9cmz:C (2.45) BS01 A1AZE N/A GO:0004674 ... Q8IDW1 N/A
    593755 9em1:A (1.5) BS01 MG 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    593756 9em1:A (1.5) BS02 UK9 3.1.3.16
    3.1.3.74    		 GO:0000287 ... Q96GD0 38856179
    593757 9ema:A (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593758 9ema:A (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593759 9ema:A (2.4) BS03 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593760 9ema:B (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593761 9ema:B (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593762 9ema:C (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593763 9ema:C (2.4) BS02 A1H5V 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593764 9emb:A (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    593765 9emb:A (2.98) BS02 PGW ? GO:0000166 ... P03819 N/A
    593766 9emb:B (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    593767 9emc:A (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593768 9emc:B (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593769 9emc:C (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    593770 9emc:D (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593771 9emc:D (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593772 9emc:E (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593773 9emc:E (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593774 9emc:F (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593775 9emc:F (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    593776 9enb:A (2.66) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593777 9enb:A (2.66) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593778 9enb:B (2.66) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593779 9enb:B (2.66) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593780 9enc:A (3.36) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593781 9enc:B (3.36) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593782 9ene:A (3.15) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593783 9ene:A (3.15) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593784 9ene:B (3.15) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593785 9ene:B (3.15) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593786 9enf:A (2.97) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593787 9enf:A (2.97) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593788 9enf:B (2.97) BS01 rna N/A GO:0005634 ... Q9BZE2 38996458
    593789 9enf:B (2.97) BS02 rna N/A GO:0005634 ... Q9BZE2 38996458
    593790 9enp:A (2.12) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593791 9enp:A (2.12) BS02 dna 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593792 9enp:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593793 9enp:A (2.12) BS04 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593794 9enp:B (2.12) BS01 dna ? GO:0003677 ... P10226 38806233
    593795 9enp:B (2.12) BS02 dna ? GO:0003677 ... P10226 38806233
    593796 9enq:A (2.12) BS01 dna 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593797 9enq:A (2.12) BS02 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593798 9enq:A (2.12) BS03 CA 2.7.7.7
    3.1.26.4    		 GO:0003677 ... P04293 38806233
    593799 9enz:AAA (1.6) BS01 PT 3.2.1.17 GO:0003796 ... P00698 38727007
    593800 9eo4:B (2.66) BS01 CLR N/A GO:0001504 ... Q01959 39112703
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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