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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    593201 9b3p:A (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    593202 9b3p:A (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    593203 9b3p:B (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    593204 9b3p:B (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    593205 9b3p:C (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    593206 9b3p:C (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    593207 9b3p:D (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    593208 9b3p:D (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    593209 9b3p:E (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    593210 9b3p:E (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    593211 9b3p:F (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    593212 9b3p:F (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    593213 9b3p:G (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    593214 9b3p:G (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    593215 9b3p:H (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    593216 9b3p:H (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    593217 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593218 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593219 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593220 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593221 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593222 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    593223 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593224 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593225 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593226 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593227 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593228 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593229 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593230 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593231 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593232 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593233 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593234 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593235 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593236 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593237 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593238 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593239 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593240 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    593241 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    593242 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593243 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593244 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    593245 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    593246 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593247 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    593248 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593249 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593250 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593251 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    593252 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593253 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593254 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593255 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593256 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593257 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593258 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593259 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593260 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593261 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593262 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593263 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593264 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593265 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000151 ... P46595 39143218
    593266 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593267 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593268 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593269 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593270 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593271 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593272 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593273 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593274 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593275 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593276 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593277 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593278 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    593279 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593280 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593281 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593282 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593283 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593284 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    593285 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    593286 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    593287 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    593288 9b70:A (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    593289 9b70:B (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    593290 9b71:A (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    593291 9b71:B (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    593292 9b8o:H (3.2) BS01 peptide N/A GO:0005654 ... Q6P503 38900912
    593293 9b8o:a (3.2) BS01 MAN N/A GO:0000220 ... P25286 38900912
    593294 9b8o:a (3.2) BS02 GLC N/A GO:0000220 ... P25286 38900912
    593295 9b8o:a (3.2) BS03 WJP N/A GO:0000220 ... P25286 38900912
    593296 9b8o:a (3.2) BS04 LP3 N/A GO:0000220 ... P25286 38900912
    593297 9b8o:h (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593298 9b8o:i (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593299 9b8o:i (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593300 9b8o:i (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593301 9b8o:j (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593302 9b8o:j (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593303 9b8o:j (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593304 9b8o:j (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    593305 9b8o:k (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593306 9b8o:k (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593307 9b8o:k (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593308 9b8o:l (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593309 9b8o:l (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593310 9b8o:l (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593311 9b8o:m (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593312 9b8o:m (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593313 9b8o:m (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593314 9b8o:n (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593315 9b8o:n (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593316 9b8o:n (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593317 9b8o:n (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    593318 9b8o:n (3.2) BS05 CLR N/A GO:0000220 ... P63081 38900912
    593319 9b8o:o (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    593320 9b8o:o (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    593321 9b8o:o (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    593322 9b8p:A (3.2) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    593323 9b8p:D (3.2) BS01 ADP N/A GO:0000221 ... P62815 38900912
    593324 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593325 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593326 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593327 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593328 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593329 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593330 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593331 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593332 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593333 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593334 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593335 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593336 9b8y:A (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    593337 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593338 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593339 9b8y:B (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    593340 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593341 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593342 9b8y:C (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    593343 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593344 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593345 9b8y:D (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    593346 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593347 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593348 9b8z:A (3.4) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    593349 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593350 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593351 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    593352 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593353 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593354 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    593355 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593356 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593357 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    593358 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593359 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593360 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    593361 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593362 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    593363 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    593364 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593365 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593366 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593367 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593368 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593369 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593370 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593371 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    593372 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 N/A
    593373 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 N/A
    593374 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    593375 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 N/A
    593376 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    593377 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    593378 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    593379 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    593380 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    593381 9bc2:A (2.75) BS01 peptide N/A GO:0000785 ... P21980 38959038
    593382 9bc3:A (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    593383 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    593384 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    593385 9bc3:B (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    593386 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    593387 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    593388 9bc4:A (1.84) BS01 peptide N/A GO:0000785 ... P21980 38959038
    593389 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    593390 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    593391 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    593392 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    593393 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    593394 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    593395 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    593396 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    593397 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    593398 9bct:B (2.5) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    593399 9bct:B (2.5) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    593400 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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