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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    592801 8z8x:A (3.06) BS02 rna ? GO:0042025 ... P27194 38816392
    592802 8z8x:C (3.06) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    592803 8z90:A (2.87) BS01 rna ? GO:0042025 ... P27194 38816392
    592804 8z90:A (2.87) BS02 rna ? GO:0042025 ... P27194 38816392
    592805 8z90:C (2.87) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    592806 8z97:A (2.65) BS01 rna ? GO:0042025 ... P27194 38816392
    592807 8z97:A (2.65) BS02 rna ? GO:0042025 ... P27194 38816392
    592808 8z97:A (2.65) BS03 rna ? GO:0042025 ... P27194 38816392
    592809 8z97:C (2.65) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    592810 8z97:C (2.65) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    592811 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    592812 8z98:A (2.52) BS01 rna ? GO:0042025 ... P27194 38816392
    592813 8z98:A (2.52) BS02 V9G ? GO:0042025 ... P27194 38816392
    592814 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    592815 8z9h:A (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    592816 8z9h:A (2.7) BS02 rna ? GO:0042025 ... P27194 38816392
    592817 8z9h:A (2.7) BS03 rna ? GO:0042025 ... P27194 38816392
    592818 8z9h:C (2.7) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    592819 8z9h:C (2.7) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    592820 8z9h:C (2.7) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    592821 8z9h:H (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    592822 8z9h:H (2.7) BS02 V9G ? GO:0042025 ... P27194 38816392
    592823 8z9q:A (2.33) BS01 rna ? GO:0042025 ... P27194 38816392
    592824 8z9r:A (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    592825 8z9r:A (2.58) BS02 rna ? GO:0042025 ... P27194 38816392
    592826 8z9r:A (2.58) BS03 rna ? GO:0042025 ... P27194 38816392
    592827 8z9r:C (2.58) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    592828 8z9r:C (2.58) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    592829 8z9r:H (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    592830 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    592831 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    592832 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    592833 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    592834 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    592835 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    592836 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    592837 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    592838 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    592839 8zbe:A (3.24) BS01 peptide N/A GO:0004930 ... P07550
    P35346
    38926478
    592840 8zcj:G (3.09) BS01 peptide N/A GO:0004930 ... P07550
    P35346
    38926478
    592841 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    592842 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    592843 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    592844 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    592845 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    592846 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    592847 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    592848 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    592849 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    592850 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    592851 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    592852 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    592853 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    592854 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    592855 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    592856 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    592857 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    592858 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    592859 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    592860 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    592861 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    592862 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    592863 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    592864 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    592865 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    592866 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    592867 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    592868 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    592869 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    592870 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    592871 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    592872 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    592873 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    592874 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    592875 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    592876 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    592877 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    592878 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    592879 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    592880 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    592881 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    592882 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    592883 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    592884 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    592885 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    592886 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    592887 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    592888 8zee:H (2.9) BS01 CLA N/A GO:0009507 ... P22666 38890314
    592889 8zee:H (2.9) BS02 CLA N/A GO:0009507 ... P22666 38890314
    592890 8zee:H (2.9) BS03 CLA N/A GO:0009507 ... P22666 38890314
    592891 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    592892 8zee:X (2.9) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    592893 8zfk:A (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592894 8zfk:A (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592895 8zfk:B (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592896 8zfk:B (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592897 8zfk:C (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592898 8zfk:C (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592899 8zfk:D (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592900 8zfk:D (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592901 8zfk:E (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592902 8zfk:E (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7
    N/A
    592903 8zgs:B (3.04) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    592904 8zgt:B (2.96) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    592905 8zj2:D (4.66) BS01 MG N/A GO:0003924 ... P84095 38857861
    592906 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    592907 8zje:R (3.07) BS01 peptide N/A GO:0004930 ... Q969F8 N/A
    592908 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    592909 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    592910 8zly:A (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592911 8zly:A (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592912 8zly:A (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592913 8zly:A (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592914 8zly:B (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592915 8zly:B (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592916 8zly:B (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592917 8zly:B (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592918 8zly:C (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592919 8zly:C (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592920 8zly:C (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592921 8zly:C (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592922 8zly:D (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592923 8zly:D (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592924 8zly:D (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592925 8zly:D (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592926 8zly:E (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592927 8zly:E (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592928 8zly:E (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592929 8zly:E (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592930 8zly:F (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592931 8zly:F (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592932 8zly:F (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592933 8zly:F (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592934 8zly:G (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592935 8zly:G (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592936 8zly:G (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    592937 8zly:G (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592938 8zly:H (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    592939 8zly:H (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    592940 8zly:H (1.89) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    592941 8zm1:A (2.35) BS01 A1L16 N/A GO:0004672 ... Q15119 38844173
    592942 8zm2:A (2.34) BS01 A1L17 N/A GO:0004672 ... Q15119 38844173
    592943 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572
    38862671
    592944 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592945 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592946 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592947 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592948 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592949 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592950 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592951 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592952 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592953 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592954 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592955 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592956 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592957 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592958 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592959 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    592960 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592961 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592962 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592963 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592964 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592965 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592966 8zoz:C (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592967 8zoz:D (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    592968 8zq3:A (2.43) BS01 GDP N/A GO:0000045 ... P51149 38897042
    592969 8zr5:C (3.31) BS01 A1D8M N/A GO:0004930 ... Q8TDV5 N/A
    592970 8zrk:R (2.82) BS01 A1D8Y N/A GO:0004930 ... Q8TDV5 N/A
    592971 8zsp:R (3.14) BS01 7LD N/A GO:0001594 ... P0ABE7
    Q96RJ0
    39002128
    592972 8zss:R (3.07) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q96RJ0
    39002128
    592973 8zsv:R (2.96) BS01 A1D8X N/A GO:0001594 ... P0ABE7
    Q923Y8
    39002128
    592974 8zwv:A (1.5) BS01 V7Z N/A GO:0002009 ... P00918 N/A
    592975 8zwv:A (1.5) BS02 ZN N/A GO:0002009 ... P00918 N/A
    592976 966c:A (1.9) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    592977 966c:A (1.9) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 10074939
    592978 966c:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    592979 966c:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    592980 966c:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 10074939
    592981 966c:A (1.9) BS06 RS2 3.4.24.7 GO:0004222 ... P03956 10074939 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    592982 9aat:A (2.2) BS01 PMP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 1593633
    592983 9aat:B (2.2) BS01 PMP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 1593633
    592984 9abp:A (1.97) BS01 GLA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    PDBbind: -logKd/Ki=8.00, Kd=0.01uM
    592985 9abp:A (1.97) BS02 GAL ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.01uM
    592986 9api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    592987 9asb:Q (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    592988 9asb:Q (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    592989 9asb:Q (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    592990 9asb:Q (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    592991 9asb:Q (3.4) BS05 Y01 ? GO:0004930 ... P41180 38632411
    592992 9asb:Q (3.4) BS06 A1AF7 ? GO:0004930 ... P41180 38632411
    592993 9asb:R (3.4) BS01 TCR ? GO:0004930 ... P41180 38632411
    592994 9asb:R (3.4) BS02 CA ? GO:0004930 ... P41180 38632411
    592995 9asb:R (3.4) BS03 CA ? GO:0004930 ... P41180 38632411
    592996 9asb:R (3.4) BS04 9IG ? GO:0004930 ... P41180 38632411
    592997 9asb:R (3.4) BS05 A1AF7 ? GO:0004930 ... P41180 38632411
    592998 9ass:A (1.75) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    592999 9ass:A (1.75) BS02 FUC 3.4.21.37 GO:0000122 ... P08246 N/A
    593000 9asx:B (1.96) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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