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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    592601 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    592602 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    592603 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    592604 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    592605 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    592606 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    592607 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    592608 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    592609 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    592610 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    592611 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    592612 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    592613 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    592614 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    592615 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    592616 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    592617 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    592618 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    592619 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    592620 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    592621 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    592622 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    592623 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    592624 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    592625 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    592626 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    592627 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    592628 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    592629 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    592630 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    592631 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    592632 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    592633 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    592634 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    592635 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    592636 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    592637 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    592638 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    592639 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    592640 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    592641 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    592642 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    592643 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    592644 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    592645 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    592646 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    592647 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    592648 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9    		 38718132
    592649 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    592650 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... A0A8C0T7K4 38906067
    592651 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    592652 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    592653 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    592654 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    592655 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    592656 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    592657 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    592658 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    592659 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    592660 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    592661 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    592662 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    592663 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    592664 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    592665 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    592666 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    592667 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    592668 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    592669 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    592670 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    592671 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    592672 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    592673 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    592674 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    592675 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    592676 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    592677 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    592678 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    592679 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    592680 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    592681 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    592682 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    592683 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    592684 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    592685 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    592686 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    592687 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    592688 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    592689 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    592690 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    592691 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592692 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592693 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592694 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    592695 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    592696 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592697 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592698 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    592699 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    592700 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592701 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592702 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    592703 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    592704 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    592705 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592706 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592707 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592708 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    592709 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    592710 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592711 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592712 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592713 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    592714 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    592715 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592716 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    592717 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    592718 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    592719 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592720 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592721 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592722 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592723 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592724 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592725 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592726 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592727 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592728 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592729 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592730 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    592731 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    592732 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    592733 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    592734 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    592735 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    592736 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    592737 8yv8:A (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    592738 8yv8:A (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    592739 8yv8:B (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    592740 8yv8:B (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    592741 8yv8:C (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    592742 8yv8:C (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    592743 8yv8:D (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    592744 8yv8:D (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    592745 8yv8:E (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    592746 8yv8:E (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    592747 8yv8:F (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    592748 8yv8:F (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    592749 8yv8:G (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    592750 8yv8:G (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    592751 8yv8:H (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    592752 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    592753 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    592754 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    592755 8yvp:M (2.5) BS01 A1L0D N/A GO:0000502 ... Q9Z2U1 38906067
    592756 8yvp:S (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    592757 8yvp:X (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    592758 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    592759 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    592760 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    592761 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    592762 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    592763 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    592764 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    592765 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    592766 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    592767 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    592768 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    592769 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    592770 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    592771 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    592772 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    592773 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    592774 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    592775 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    592776 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    592777 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    592778 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    592779 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    592780 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592781 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592782 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592783 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592784 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592785 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592786 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    592787 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592788 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592789 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592790 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    592791 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592792 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592793 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    592794 8z85:A (2.3) BS01 rna ? GO:0042025 ... P27194 38816392
    592795 8z85:A (2.3) BS02 rna ? GO:0042025 ... P27194 38816392
    592796 8z8j:A (3.16) BS01 rna ? GO:0042025 ... P27194 38816392
    592797 8z8j:A (3.16) BS02 rna ? GO:0042025 ... P27194 38816392
    592798 8z8n:A (2.79) BS01 rna ? GO:0042025 ... P27194 38816392
    592799 8z8n:A (2.79) BS02 rna ? GO:0042025 ... P27194 38816392
    592800 8z8x:A (3.06) BS01 rna ? GO:0042025 ... P27194 38816392
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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