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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    592401 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592402 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592403 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592404 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592405 8yjx:A (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    592406 8yjx:B (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    592407 8ykv:R (2.48) BS01 A1LYV ? GO:0002001 ... Q9BXA5 38834763
    592408 8yky:R (2.99) BS01 A1AEI N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    592409 8yky:R (2.99) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    592410 8yoo:LA (2.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    592411 8yoo:LA (2.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    592412 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    592413 8yoo:LB (2.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    592414 8yoo:LC (2.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    592415 8yoo:LC (2.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    592416 8yoo:LD (2.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    592417 8yoo:LD (2.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    592418 8yoo:LE (2.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    592419 8yoo:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    592420 8yoo:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    592421 8yoo:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    592422 8yoo:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    592423 8yoo:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    592424 8yoo:LI (2.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    592425 8yoo:LI (2.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    592426 8yoo:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    592427 8yoo:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    592428 8yoo:LL (2.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    592429 8yoo:LL (2.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    592430 8yoo:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    592431 8yoo:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    592432 8yoo:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    592433 8yoo:LO (2.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    592434 8yoo:LP (2.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    592435 8yoo:LP (2.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    592436 8yoo:LQ (2.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    592437 8yoo:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    592438 8yoo:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    592439 8yoo:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    592440 8yoo:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    592441 8yoo:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    592442 8yoo:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    592443 8yoo:LU (2.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    592444 8yoo:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    592445 8yoo:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    592446 8yoo:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    592447 8yoo:LX (2.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    592448 8yoo:LX (2.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    592449 8yoo:LY (2.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    592450 8yoo:LY (2.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    592451 8yoo:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    592452 8yoo:La (2.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    592453 8yoo:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    592454 8yoo:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    592455 8yoo:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    592456 8yoo:Le (2.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    592457 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    592458 8yoo:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    592459 8yoo:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    592460 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    592461 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    592462 8yoo:Lh (2.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    592463 8yoo:Lh (2.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    592464 8yoo:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    592465 8yoo:Lj (2.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    592466 8yoo:Lj (2.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    592467 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    592468 8yoo:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    592469 8yoo:Ll (2.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    592470 8yoo:Ll (2.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    592471 8yoo:Lm (2.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    592472 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    592473 8yoo:Lo (2.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    592474 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    592475 8yoo:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    592476 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    592477 8yoo:Lr (2.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    592478 8yoo:Ls (2.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    592479 8yoo:Lt (2.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    592480 8yoo:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    592481 8yoo:SB (2.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    592482 8yoo:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    592483 8yoo:SD (2.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    592484 8yoo:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    592485 8yoo:SF (2.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    592486 8yoo:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    592487 8yoo:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    592488 8yoo:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    592489 8yoo:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    592490 8yoo:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    592491 8yoo:SK (2.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    592492 8yoo:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    592493 8yoo:SL (2.0) BS02 rna N/A GO:0002181 ... P62280 38942792
    592494 8yoo:SM (2.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    592495 8yoo:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    592496 8yoo:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 38942792
    592497 8yoo:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    592498 8yoo:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    592499 8yoo:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    592500 8yoo:SR (2.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    592501 8yoo:SS (2.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    592502 8yoo:ST (2.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    592503 8yoo:SU (2.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    592504 8yoo:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    592505 8yoo:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    592506 8yoo:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    592507 8yoo:SZ (2.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    592508 8yoo:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    592509 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    592510 8yoo:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    592511 8yoo:Sc (2.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    592512 8yoo:Sd (2.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    592513 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    592514 8yoo:Sf (2.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    592515 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    592516 8yoo:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    592517 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    592518 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    592519 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    592520 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    592521 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    592522 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    592523 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    592524 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    592525 8yop:LE (2.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    592526 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    592527 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    592528 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    592529 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    592530 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    592531 8yop:LI (2.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    592532 8yop:LI (2.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    592533 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    592534 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    592535 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    592536 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    592537 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    592538 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    592539 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    592540 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    592541 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    592542 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    592543 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    592544 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    592545 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    592546 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    592547 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    592548 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    592549 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    592550 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    592551 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    592552 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    592553 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    592554 8yop:LX (2.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    592555 8yop:LX (2.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    592556 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    592557 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    592558 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    592559 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    592560 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    592561 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    592562 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    592563 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    592564 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    592565 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    592566 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    592567 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    592568 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    592569 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    592570 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    592571 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    592572 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    592573 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    592574 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    592575 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    592576 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    592577 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    592578 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    592579 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    592580 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    592581 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    592582 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    592583 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    592584 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    592585 8yop:Ls (2.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    592586 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    592587 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    592588 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    592589 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    592590 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    592591 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    592592 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    592593 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    592594 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    592595 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    592596 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    592597 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    592598 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    592599 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    592600 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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