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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    590801 8xr6:B (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590802 8xr6:B (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590803 8xr6:B (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590804 8xr6:B (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590805 8xr6:B (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590806 8xr6:B (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590807 8xr6:B (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590808 8xr6:B (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590809 8xr6:B (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590810 8xr6:B (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590811 8xr6:C (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    590812 8xr6:C (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590813 8xr6:C (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590814 8xr6:C (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590815 8xr6:C (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590816 8xr6:C (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590817 8xr6:C (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590818 8xr6:C (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590819 8xr6:C (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590820 8xr6:C (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590821 8xr6:C (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590822 8xr6:C (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590823 8xr6:C (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590824 8xr6:C (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590825 8xr6:C (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590826 8xr6:C (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590827 8xr6:C (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590828 8xr6:D (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI37 N/A
    590829 8xr6:D (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    590830 8xr6:D (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    590831 8xr6:D (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590832 8xr6:D (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590833 8xr6:D (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    590834 8xr6:D (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590835 8xr6:D (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590836 8xr6:D (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    590837 8xr6:D (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590838 8xr6:D (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590839 8xr6:D (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    590840 8xr6:E (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    590841 8xr6:E (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    590842 8xr6:H (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590843 8xr6:H (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590844 8xr6:H (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590845 8xr6:H (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590846 8xr6:H (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590847 8xr6:H (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    590848 8xr6:I (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    590849 8xr6:I (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    590850 8xr6:J (2.53) BS01 peptide N/A GO:0009523 ... A0A222AI54 N/A
    590851 8xr6:K (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    590852 8xr6:K (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    590853 8xr6:K (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    590854 8xr6:X (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    590855 8xr6:Y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    590856 8xr6:Z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    590857 8xr6:a (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI41 N/A
    590858 8xr6:a (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    590859 8xr6:a (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    590860 8xr6:a (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    590861 8xr6:a (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590862 8xr6:a (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590863 8xr6:a (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    590864 8xr6:a (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590865 8xr6:a (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    590866 8xr6:a (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590867 8xr6:a (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590868 8xr6:a (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    590869 8xr6:b (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590870 8xr6:b (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590871 8xr6:b (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590872 8xr6:b (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590873 8xr6:b (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590874 8xr6:b (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590875 8xr6:b (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590876 8xr6:b (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590877 8xr6:b (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590878 8xr6:b (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590879 8xr6:b (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590880 8xr6:b (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590881 8xr6:b (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590882 8xr6:b (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590883 8xr6:b (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590884 8xr6:b (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590885 8xr6:b (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590886 8xr6:b (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590887 8xr6:b (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    590888 8xr6:c (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    590889 8xr6:c (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590890 8xr6:c (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590891 8xr6:c (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590892 8xr6:c (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590893 8xr6:c (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590894 8xr6:c (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590895 8xr6:c (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590896 8xr6:c (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590897 8xr6:c (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590898 8xr6:c (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590899 8xr6:c (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590900 8xr6:c (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590901 8xr6:c (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    590902 8xr6:c (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590903 8xr6:c (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590904 8xr6:c (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    590905 8xr6:d (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI37 N/A
    590906 8xr6:d (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    590907 8xr6:d (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    590908 8xr6:d (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590909 8xr6:d (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590910 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    590911 8xr6:d (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590912 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590913 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    590914 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590915 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    590916 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    590917 8xr6:e (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    590918 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    590919 8xr6:h (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590920 8xr6:h (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590921 8xr6:h (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590922 8xr6:h (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590923 8xr6:h (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    590924 8xr6:h (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    590925 8xr6:i (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    590926 8xr6:i (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    590927 8xr6:j (2.53) BS01 peptide N/A GO:0009523 ... A0A222AI54 N/A
    590928 8xr6:k (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    590929 8xr6:k (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    590930 8xr6:k (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    590931 8xr6:x (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    590932 8xr6:y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    590933 8xr6:z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    590934 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    590935 8xsx:CB (2.4) BS01 rna N/A GO:0002244 ... P13639 38942792
    590936 8xsx:CB (2.4) BS02 rna N/A GO:0002244 ... P13639 38942792
    590937 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    590938 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    590939 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    590940 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    590941 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    590942 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    590943 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    590944 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    590945 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    590946 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    590947 8xsx:LE (2.4) BS01 rna N/A GO:0000027 ... Q02878 38942792
    590948 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    590949 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    590950 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    590951 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    590952 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    590953 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    590954 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    590955 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    590956 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    590957 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    590958 8xsx:LL (2.4) BS01 rna N/A GO:0001824 ... P26373 38942792
    590959 8xsx:LL (2.4) BS02 rna N/A GO:0001824 ... P26373 38942792
    590960 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    590961 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    590962 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    590963 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    590964 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    590965 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    590966 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    590967 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    590968 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    590969 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    590970 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    590971 8xsx:LT (2.4) BS01 rna N/A GO:0002181 ... P46778 38942792
    590972 8xsx:LT (2.4) BS02 rna N/A GO:0002181 ... P46778 38942792
    590973 8xsx:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 38942792
    590974 8xsx:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 38942792
    590975 8xsx:LW (2.4) BS01 rna N/A GO:0000027 ... P83731 38942792
    590976 8xsx:LW (2.4) BS02 rna N/A GO:0000027 ... P83731 38942792
    590977 8xsx:LX (2.4) BS01 rna N/A GO:0000027 ... P62750 38942792
    590978 8xsx:LX (2.4) BS02 rna N/A GO:0000027 ... P62750 38942792
    590979 8xsx:LY (2.4) BS01 rna N/A GO:0002181 ... P61254 38942792
    590980 8xsx:LY (2.4) BS02 rna N/A GO:0002181 ... P61254 38942792
    590981 8xsx:LZ (2.4) BS01 rna N/A GO:0002181 ... P61353 38942792
    590982 8xsx:La (2.4) BS01 rna N/A GO:0002181 ... P46776 38942792
    590983 8xsx:Lb (2.4) BS01 rna N/A GO:0002181 ... P47914 38942792
    590984 8xsx:Lc (2.4) BS01 rna N/A GO:0002181 ... P62888 38942792
    590985 8xsx:Lc (2.4) BS02 rna N/A GO:0002181 ... P62888 38942792
    590986 8xsx:Ld (2.4) BS01 rna N/A GO:0002181 ... P62899 38942792
    590987 8xsx:Le (2.4) BS01 rna N/A GO:0002181 ... P62910 38942792
    590988 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    590989 8xsx:Lf (2.4) BS01 rna N/A GO:0000049 ... P18077 38942792
    590990 8xsx:Lg (2.4) BS01 rna N/A GO:0002181 ... P49207 38942792
    590991 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    590992 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    590993 8xsx:Lh (2.4) BS01 rna N/A GO:0000463 ... P42766 38942792
    590994 8xsx:Lh (2.4) BS02 rna N/A GO:0000463 ... P42766 38942792
    590995 8xsx:Li (2.4) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    590996 8xsx:Lj (2.4) BS01 rna N/A GO:0002181 ... P61927 38942792
    590997 8xsx:Lj (2.4) BS02 rna N/A GO:0002181 ... P61927 38942792
    590998 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    590999 8xsx:Lk (2.4) BS01 rna N/A GO:0001501 ... P63173 38942792
    591000 8xsx:Ll (2.4) BS01 rna N/A GO:0002181 ... P62891 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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