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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    590601 8xlp:d (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    590602 8xlp:d (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    590603 8xlp:d (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    590604 8xlp:e (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    590605 8xlp:f (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    590606 8xlp:f (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    590607 8xlp:h (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    590608 8xlp:h (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    590609 8xlp:h (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    590610 8xlp:h (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    590611 8xlp:h (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    590612 8xlp:i (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    590613 8xlp:i (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    590614 8xlp:k (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    590615 8xlp:k (2.57) BS02 WVN N/A GO:0005737 ... A6MVZ3 N/A
    590616 8xlp:k (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    590617 8xlp:x (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    590618 8xlp:y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    590619 8xm7:D (4.91) BS01 MG N/A GO:0003924 ... P84095 38857861
    590620 8xm7:D (4.91) BS02 GTP N/A GO:0003924 ... P84095 38857861
    590621 8xmb:A (3.4) BS01 rna N/A GO:0000418 ... Q9LQ02 N/A
    590622 8xmb:A (3.4) BS02 MG N/A GO:0000418 ... Q9LQ02 N/A
    590623 8xmb:A (3.4) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590624 8xmb:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590625 8xmb:B (3.4) BS01 dna N/A GO:0000418 ... Q9LK40 N/A
    590626 8xmb:B (3.4) BS02 rna N/A GO:0000418 ... Q9LK40 N/A
    590627 8xmb:B (3.4) BS03 dna N/A GO:0000418 ... Q9LK40 N/A
    590628 8xmb:B (3.4) BS04 ZN N/A GO:0000418 ... Q9LK40 N/A
    590629 8xmb:B (3.4) BS05 GTP N/A GO:0000418 ... Q9LK40 N/A
    590630 8xmb:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    590631 8xmb:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    590632 8xmb:I (3.4) BS02 ZN N/A GO:0000419 ... Q6NLH0 N/A
    590633 8xmb:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    590634 8xmc:A (3.1) BS01 dna N/A GO:0000418 ... Q9LQ02 N/A
    590635 8xmc:A (3.1) BS02 rna N/A GO:0000418 ... Q9LQ02 N/A
    590636 8xmc:A (3.1) BS03 dna N/A GO:0000418 ... Q9LQ02 N/A
    590637 8xmc:A (3.1) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590638 8xmc:A (3.1) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    590639 8xmc:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590640 8xmc:A (3.1) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590641 8xmc:B (3.1) BS01 rna N/A GO:0000418 ... Q9LK40 N/A
    590642 8xmc:B (3.1) BS02 dna N/A GO:0000418 ... Q9LK40 N/A
    590643 8xmc:B (3.1) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    590644 8xmc:C (3.1) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    590645 8xmc:E (3.1) BS01 dna N/A GO:0000418 ... O81098 N/A
    590646 8xmc:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    590647 8xmc:J (3.1) BS01 ZN N/A GO:0000418 ... Q8LFJ6 N/A
    590648 8xmc:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    590649 8xmd:A (3.4) BS01 dna N/A GO:0000418 ... Q9LQ02 N/A
    590650 8xmd:A (3.4) BS02 rna N/A GO:0000418 ... Q9LQ02 N/A
    590651 8xmd:A (3.4) BS03 dna N/A GO:0000418 ... Q9LQ02 N/A
    590652 8xmd:A (3.4) BS04 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590653 8xmd:A (3.4) BS05 MG N/A GO:0000418 ... Q9LQ02 N/A
    590654 8xmd:A (3.4) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590655 8xmd:A (3.4) BS07 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590656 8xmd:B (3.4) BS01 rna N/A GO:0000418 ... Q9LK40 N/A
    590657 8xmd:B (3.4) BS02 dna N/A GO:0000418 ... Q9LK40 N/A
    590658 8xmd:B (3.4) BS03 ZN N/A GO:0000418 ... Q9LK40 N/A
    590659 8xmd:C (3.4) BS01 ZN N/A GO:0000418 ... Q39211 N/A
    590660 8xmd:E (3.4) BS01 dna N/A GO:0000418 ... O81098 N/A
    590661 8xmd:I (3.4) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    590662 8xmd:L (3.4) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    590663 8xme:A (3.1) BS01 rna N/A GO:0000418 ... Q9LQ02 N/A
    590664 8xme:A (3.1) BS02 dna N/A GO:0000418 ... Q9LQ02 N/A
    590665 8xme:A (3.1) BS03 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590666 8xme:A (3.1) BS04 MG N/A GO:0000418 ... Q9LQ02 N/A
    590667 8xme:A (3.1) BS05 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590668 8xme:A (3.1) BS06 ZN N/A GO:0000418 ... Q9LQ02 N/A
    590669 8xme:B (3.1) BS01 dna N/A GO:0000418 ... Q9LK40 N/A
    590670 8xme:B (3.1) BS02 rna N/A GO:0000418 ... Q9LK40 N/A
    590671 8xme:B (3.1) BS03 dna N/A GO:0000418 ... Q9LK40 N/A
    590672 8xme:E (3.1) BS01 dna N/A GO:0000418 ... O81098 N/A
    590673 8xme:I (3.1) BS01 ZN N/A GO:0000419 ... Q6NLH0 N/A
    590674 8xme:L (3.1) BS01 ZN N/A GO:0000418 ... Q9FLM8 N/A
    590675 8xmh:A (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590676 8xmh:B (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590677 8xmh:C (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590678 8xmh:D (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590679 8xmh:E (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590680 8xmh:F (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590681 8xmh:G (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590682 8xmh:H (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    590683 8xmi:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590684 8xmi:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590685 8xmi:C (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590686 8xmi:D (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590687 8xmi:E (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590688 8xmi:F (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590689 8xmi:G (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590690 8xmi:H (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    590691 8xmm:A (2.89) BS01 CLR ? GO:0001518 ... Q15858 38381792
    590692 8xmm:A (2.89) BS02 LPE ? GO:0001518 ... Q15858 38381792
    590693 8xmm:A (2.89) BS03 1PW ? GO:0001518 ... Q15858 38381792
    590694 8xmm:A (2.89) BS04 LPE ? GO:0001518 ... Q15858 38381792
    590695 8xmm:A (2.89) BS05 LPE ? GO:0001518 ... Q15858 38381792
    590696 8xmm:A (2.89) BS06 LPE ? GO:0001518 ... Q15858 38381792
    590697 8xmm:A (2.89) BS07 LPE ? GO:0001518 ... Q15858 38381792
    590698 8xmm:A (2.89) BS08 LPE ? GO:0001518 ... Q15858 38381792
    590699 8xmm:A (2.89) BS09 P5S ? GO:0001518 ... Q15858 38381792
    590700 8xmn:A (3.37) BS01 LPE ? GO:0001518 ... Q15858 38381792
    590701 8xmn:A (3.37) BS02 LPE ? GO:0001518 ... Q15858 38381792
    590702 8xmn:A (3.37) BS03 LPE ? GO:0001518 ... Q15858 38381792
    590703 8xmo:A (3.39) BS01 LPE ? GO:0001518 ... Q15858 38381792
    590704 8xmo:A (3.39) BS02 LPE ? GO:0001518 ... Q15858 38381792
    590705 8xmo:A (3.39) BS03 LPE ? GO:0001518 ... Q15858 38381792
    590706 8xn6:A (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    590707 8xn6:A (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    590708 8xn6:B (2.4) BS01 ANP 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    590709 8xn6:B (2.4) BS02 MG 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 N/A
    590710 8xof:R (2.6) BS01 A1LVW ? GO:0000139 ... Q99527 38744981
    590711 8xok:A (2.84) BS01 DU0 N/A GO:0001409 ... O15439 38886124
    590712 8xok:A (2.84) BS02 DU0 N/A GO:0001409 ... O15439 38886124
    590713 8xok:A (2.84) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    590714 8xok:A (2.84) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    590715 8xok:A (2.84) BS05 DU0 N/A GO:0001409 ... O15439 38886124
    590716 8xok:A (2.84) BS06 DU0 N/A GO:0001409 ... O15439 38886124
    590717 8xok:A (2.84) BS07 DU0 N/A GO:0001409 ... O15439 38886124
    590718 8xok:A (2.84) BS08 DU0 N/A GO:0001409 ... O15439 38886124
    590719 8xok:A (2.84) BS09 DU0 N/A GO:0001409 ... O15439 38886124
    590720 8xol:A (3.02) BS01 ANP N/A GO:0001409 ... O15439 38886124
    590721 8xol:A (3.02) BS02 DU0 N/A GO:0001409 ... O15439 38886124
    590722 8xol:A (3.02) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    590723 8xol:A (3.02) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    590724 8xom:A (3.05) BS01 ANP N/A GO:0001409 ... O15439 38886124
    590725 8xom:A (3.05) BS02 MTX N/A GO:0001409 ... O15439 38886124
    590726 8xom:A (3.05) BS03 DU0 N/A GO:0001409 ... O15439 38886124
    590727 8xom:A (3.05) BS04 DU0 N/A GO:0001409 ... O15439 38886124
    590728 8xom:A (3.05) BS05 DU0 N/A GO:0001409 ... O15439 38886124
    590729 8xom:A (3.05) BS06 DU0 N/A GO:0001409 ... O15439 38886124
    590730 8xom:A (3.05) BS07 DU0 N/A GO:0001409 ... O15439 38886124
    590731 8xom:A (3.05) BS08 MG N/A GO:0001409 ... O15439 38886124
    590732 8xp5:A (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    590733 8xp5:B (2.55) BS01 ZN ? GO:0000976 ... P04637
    Q07817    		 N/A
    590734 8xpt:A (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590735 8xpt:A (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590736 8xpt:A (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590737 8xpt:A (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590738 8xpt:A (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590739 8xpt:B (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590740 8xpt:B (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590741 8xpt:B (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590742 8xpt:B (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590743 8xpt:B (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590744 8xpt:C (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590745 8xpt:C (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590746 8xpt:C (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590747 8xpt:C (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590748 8xpt:C (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590749 8xpt:D (3.35) BS01 SAH 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590750 8xpt:D (3.35) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590751 8xpt:D (3.35) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590752 8xpt:D (3.35) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590753 8xpt:D (3.35) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q9H9B1 N/A
    590754 8xpu:B (3.3) BS01 VRW N/A GO:0002720 ... Q01650 38956038
    590755 8xq7:A (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    590756 8xq7:B (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    590757 8xq8:A (3.35) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    590758 8xql:R (2.99) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590759 8xql:R (2.99) BS02 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590760 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590761 8xqn:R (3.05) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590762 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590763 8xqo:R (2.77) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590764 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590765 8xqp:R (3.29) BS01 GOQ N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590766 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590767 8xqr:R (3.2) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590768 8xqs:R (3.3) BS01 FLF N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590769 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590770 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590771 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    590772 8xr4:A (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590773 8xr4:B (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590774 8xr4:C (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590775 8xr4:D (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590776 8xr4:E (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590777 8xr4:F (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590778 8xr4:G (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590779 8xr4:H (1.94) BS01 NAP ? GO:0000166 ... A0A3R7J519 38459030
    590780 8xr6:A (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI41 N/A
    590781 8xr6:A (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    590782 8xr6:A (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    590783 8xr6:A (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    590784 8xr6:A (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590785 8xr6:A (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590786 8xr6:A (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    590787 8xr6:A (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590788 8xr6:A (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    590789 8xr6:A (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590790 8xr6:A (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    590791 8xr6:A (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    590792 8xr6:B (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590793 8xr6:B (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590794 8xr6:B (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590795 8xr6:B (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590796 8xr6:B (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590797 8xr6:B (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590798 8xr6:B (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590799 8xr6:B (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    590800 8xr6:B (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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