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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    590201 8x6r:C (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590202 8x6r:D (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    590203 8x6r:D (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590204 8x6r:E (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    590205 8x6r:E (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590206 8x6r:F (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    590207 8x6r:F (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590208 8x77:B (3.52) BS01 SAH 2.1.1.85 GO:0000785 ... Q86TU7 38755176
    590209 8x77:C (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    590210 8x77:E (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    590211 8x77:F (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    590212 8x77:H (3.52) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    590213 8x79:R (2.41) BS01 Y9Q ? GO:0004930 ... P43119 38335293
    590214 8x7a:R (2.56) BS01 Y9J ? GO:0004930 ... P43119 38335293
    590215 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590216 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590217 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590218 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590219 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590220 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590221 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590222 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    590223 8x8l:R (2.7) BS01 peptide ? GO:0004930 ... P35346 N/A
    590224 8x8n:R (2.9) BS01 peptide ? GO:0004930 ... P35346 N/A
    590225 8x8q:F (3.14) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    590226 8x90:A (2.95) BS01 PS1 ? GO:0001540 ... O00555 38443561
    590227 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    590228 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    590229 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    590230 8x90:A (2.95) BS05 Y01 ? GO:0001540 ... O00555 38443561
    590231 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    590232 8x90:A (2.95) BS07 Y01 ? GO:0001540 ... O00555 38443561
    590233 8x90:A (2.95) BS08 Y01 ? GO:0001540 ... O00555 38443561
    590234 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    590235 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    590236 8x91:A (3.11) BS01 peptide ? GO:0001540 ... O00555 38443561
    590237 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    590238 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    590239 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    590240 8x91:A (3.11) BS05 Y01 ? GO:0001540 ... O00555 38443561
    590241 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    590242 8x91:A (3.11) BS07 Y01 ? GO:0001540 ... O00555 38443561
    590243 8x91:A (3.11) BS08 Y01 ? GO:0001540 ... O00555 38443561
    590244 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    590245 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    590246 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    590247 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    590248 8x93:A (2.92) BS03 Y01 ? GO:0001540 ... O00555 38443561
    590249 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    590250 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    590251 8x93:A (2.92) BS06 Y01 ? GO:0001540 ... O00555 38443561
    590252 8x93:A (2.92) BS07 Y01 ? GO:0001540 ... O00555 38443561
    590253 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    590254 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    590255 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    590256 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590257 8x9d:A (2.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590258 8x9d:A (2.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590259 8x9d:A (2.11) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590260 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590261 8x9e:A (2.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590262 8x9e:A (2.5) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590263 8x9e:A (2.5) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590264 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590265 8x9f:A (2.48) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590266 8x9f:A (2.48) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590267 8x9f:A (2.48) BS04 S8I 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590268 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590269 8x9g:A (3.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590270 8x9g:A (3.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590271 8x9g:A (3.11) BS04 S7L 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590272 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590273 8x9h:A (2.2) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590274 8x9h:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590275 8x9h:A (2.2) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    590276 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    590277 8xam:A (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    590278 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    590279 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    590280 8xam:B (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    590281 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    590282 8xar:A (1.19) BS01 YMW N/A GO:0004478 ... P31153 38818879
    590283 8xar:A (1.19) BS02 SAM N/A GO:0004478 ... P31153 38818879
    590284 8xb0:A (1.12) BS01 YN8 N/A GO:0004478 ... P31153 38818879
    590285 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    590286 8xb2:A (3.04) BS01 YNT N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    590287 8xb3:A (2.8) BS01 YMN N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    590288 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    590289 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    590290 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    590291 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    590292 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    590293 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    590294 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    590295 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    590296 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    590297 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    590298 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    590299 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    590300 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    590301 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    590302 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    590303 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    590304 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    590305 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    590306 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    590307 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    590308 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    590309 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    590310 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    590311 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    590312 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    590313 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    590314 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    590315 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    590316 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    590317 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    590318 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    590319 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    590320 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    590321 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    590322 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    590323 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    590324 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    590325 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    590326 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    590327 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    590328 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    590329 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    590330 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    590331 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    590332 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    590333 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    590334 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    590335 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    590336 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    590337 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    590338 8xc1:A (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    590339 8xc1:A (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    590340 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    590341 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    590342 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    590343 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    590344 8xc1:B (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    590345 8xc1:B (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    590346 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    590347 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    590348 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    590349 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    590350 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    590351 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    590352 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    590353 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    590354 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    590355 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    590356 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    590357 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    590358 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    590359 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    590360 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    590361 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    590362 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    590363 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    590364 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    590365 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    590366 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    590367 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    590368 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    590369 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    590370 8xfd:D (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    590371 8xgb:B (3.24) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590372 8xgb:B (3.24) BS02 A1D49 2.3.2.5 GO:0005515 ... Q16769 38817193
    590373 8xgc:2 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    590374 8xgc:2 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    590375 8xgc:2 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    590376 8xgc:2 (3.7) BS04 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    590377 8xgc:3 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    590378 8xgc:3 (3.7) BS02 dna 3.6.4.12 GO:0000727 ... P24279 38448592
    590379 8xgc:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    590380 8xgc:3 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P24279 38448592
    590381 8xgc:4 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P30665 38448592
    590382 8xgc:4 (3.7) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 38448592
    590383 8xgc:4 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... P30665 38448592
    590384 8xgc:5 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P29496 38448592
    590385 8xgc:5 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    590386 8xgc:5 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 38448592
    590387 8xgc:5 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P29496 38448592
    590388 8xgc:6 (3.7) BS01 dna 3.6.4.12 GO:0000727 ... P53091 38448592
    590389 8xgc:6 (3.7) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    590390 8xgc:6 (3.7) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 38448592
    590391 8xgc:6 (3.7) BS04 ADP 3.6.4.12 GO:0000727 ... P53091 38448592
    590392 8xgc:7 (3.7) BS01 dna 3.6.4.12 GO:0003677 ... N/A 38448592
    590393 8xgc:7 (3.7) BS02 ZN 3.6.4.12 GO:0003677 ... N/A 38448592
    590394 8xgc:7 (3.7) BS03 ADP 3.6.4.12 GO:0003677 ... N/A 38448592
    590395 8xgc:8 (3.7) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    590396 8xgc:8 (3.7) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 38448592
    590397 8xgc:I (3.7) BS01 peptide ? GO:0000076 ... P53840 38448592
    590398 8xgc:I (3.7) BS02 dna ? GO:0000076 ... P53840 38448592
    590399 8xgc:I (3.7) BS03 dna ? GO:0000076 ... P53840 38448592
    590400 8xgc:J (3.7) BS01 dna ? GO:0000076 ... Q04659 38448592
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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