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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    590001 8wzj:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590002 8wzj:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590003 8wzj:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590004 8wzj:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590005 8wzk:A (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590006 8wzk:A (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590007 8wzk:B (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590008 8wzk:B (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590009 8wzk:C (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590010 8wzk:C (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590011 8wzk:D (2.4) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590012 8wzk:D (2.4) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590013 8wzm:A (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590014 8wzm:A (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590015 8wzm:B (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590016 8wzm:B (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590017 8wzm:C (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590018 8wzm:C (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590019 8wzm:D (2.7) BS01 HEM N/A GO:0000302 ... P04040 38935342
    590020 8wzm:D (2.7) BS02 NDP N/A GO:0000302 ... P04040 38935342
    590021 8wzt:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    590022 8wzv:A (1.6) BS01 XTX N/A GO:0003796 ... P00698 38951539
    590023 8x01:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    590024 8x01:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    590025 8x15:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590026 8x15:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590027 8x15:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590028 8x15:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590029 8x15:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590030 8x15:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590031 8x15:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590032 8x15:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590033 8x15:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590034 8x15:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590035 8x15:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590036 8x15:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590037 8x15:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590038 8x15:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590039 8x15:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    590040 8x15:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590041 8x15:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590042 8x15:J (3.2) BS01 dna ? GO:0000122 ... Q15906 38331872
    590043 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590044 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590045 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590046 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590047 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590048 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590049 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590050 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    590051 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    590052 8x15:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    590053 8x16:R (3.29) BS01 Q8L ? GO:0001609 ... P0DMS8 38627384
    590054 8x17:R (3.19) BS01 XS0 ? GO:0001609 ... P0DMS8 38627384
    590055 8x19:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590056 8x19:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590057 8x19:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590058 8x19:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590059 8x19:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590060 8x19:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590061 8x19:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590062 8x19:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    590063 8x19:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590064 8x19:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590065 8x19:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590066 8x19:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590067 8x19:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590068 8x19:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590069 8x19:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590070 8x19:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    590071 8x19:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590072 8x19:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590073 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590074 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590075 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590076 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590077 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590078 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590079 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590080 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590081 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    590082 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    590083 8x19:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    590084 8x1a:B (1.604) BS01 G6P ? GO:0015888 ... A0A0H3AFK0 38704889
    590085 8x1c:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590086 8x1c:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590087 8x1c:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590088 8x1c:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590089 8x1c:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590090 8x1c:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590091 8x1c:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590092 8x1c:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    590093 8x1c:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    590094 8x1c:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    590095 8x1c:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    590096 8x1c:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    590097 8x1c:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    590098 8x1c:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    590099 8x1c:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    590100 8x1c:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590101 8x1c:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590102 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    590103 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    590104 8x1c:L (3.2) BS01 dna ? GO:0000786 ... O43257 38331872
    590105 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590106 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590107 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590108 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590109 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    590110 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    590111 8x1c:S (3.2) BS01 dna 3.6.4.- GO:0000079 ... P60709 38331872
    590112 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    590113 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    590114 8x1c:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    590115 8x1c:W (3.2) BS01 dna ? GO:0000278 ... O95619 38331872
    590116 8x1n:A (3.31) BS01 ZN ? GO:0005615 ... P02771 38678117
    590117 8x2h:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    590118 8x2i:A (2.5) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    590119 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    590120 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    590121 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    590122 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    590123 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    590124 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    590125 8x2j:C (2.7) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    590126 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    590127 8x2j:C (2.7) BS04 JL3 ? GO:0005886 ... A9WEV4 38299372
    590128 8x2j:C (2.7) BS05 JM9 ? GO:0005886 ... A9WEV4 38299372
    590129 8x2j:D (2.7) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    590130 8x2j:F (2.7) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    590131 8x2j:F (2.7) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    590132 8x2j:F (2.7) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    590133 8x2k:A (3.03) BS01 5YM ? GO:0004930 ... P0ABE7
    P46089    		 N/A
    590134 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    590135 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    590136 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    590137 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    590138 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    590139 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    590140 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    590141 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    590142 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    590143 8x3h:A (0.93) BS01 FE ? GO:0005576 ... P02789 N/A
    590144 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    590145 8x3r:A (1.76) BS01 peptide ? GO:0000122 ... P61964 38744853
    590146 8x3s:A (1.87) BS01 peptide ? GO:0000122 ... P61964 38744853
    590147 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    590148 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    590149 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    590150 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    590151 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    590152 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    590153 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    590154 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    590155 8x52:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    590156 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    590157 8x53:B (3.0) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    590158 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    590159 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    590160 8x54:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    590161 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    590162 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    590163 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    590164 8x5d:N (3.1) BS01 rna ? GO:0003723 ... P9WJF5 38218299
    590165 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590166 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590167 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590168 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590169 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    590170 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590171 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590172 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590173 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    590174 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    590175 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    590176 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    590177 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    590178 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    590179 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    590180 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    590181 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    590182 8x63:B (3.2) BS01 Y5E ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    590183 8x64:B (3.4) BS01 Y5R ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    590184 8x6f:C (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P47768 38844782
    590185 8x6f:D (3.7) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    590186 8x6f:D (3.7) BS02 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    590187 8x6f:E (3.7) BS01 dna ? GO:0003677 ... P0A0J0 38844782
    590188 8x6f:E (3.7) BS02 dna ? GO:0003677 ... P0A0J0 38844782
    590189 8x6g:D (3.3) BS01 dna 2.7.7.6 GO:0000287 ... Q2G0N5 38844782
    590190 8x6m:A (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590191 8x6m:A (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590192 8x6m:A (2.0) BS03 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590193 8x6m:A (2.0) BS04 GOL 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590194 8x6m:B (2.0) BS01 ZN 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590195 8x6m:B (2.0) BS02 NAD 1.1.1.6
    1.1.1.75    		 GO:0005829 ... P0A9S5 38483875
    590196 8x6r:A (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    590197 8x6r:A (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590198 8x6r:B (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    590199 8x6r:B (1.85) BS02 Y9D 3.6.5.2 GO:0003924 ... P01116 38176113
    590200 8x6r:C (1.85) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38176113
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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