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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    586201 8vfh:A (2.01) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586202 8vfi:A (1.77) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586203 8vfi:A (1.77) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586204 8vfi:A (1.77) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586205 8vfi:A (1.77) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586206 8vfi:A (1.77) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586207 8vfi:A (1.77) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586208 8vfj:A (2.14) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586209 8vfj:A (2.14) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586210 8vfj:A (2.14) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 38634780
    586211 8vg5:A (1.5) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    586212 8vg8:A (1.33) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    586213 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586214 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586215 8vha:A (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    586216 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586217 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586218 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    586219 8vha:C (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    586220 8vha:D (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    586221 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586222 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    586223 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586224 8vhb:B (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    586225 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    586226 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586227 8vhb:D (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    586228 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586229 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    586230 8vhd:A (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    586231 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586232 8vhd:B (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    586233 8vhd:C (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    586234 8vhd:D (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    586235 8vhd:D (2.38) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    586236 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586237 8vhe:A (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    586238 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586239 8vhe:B (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    586240 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586241 8vhe:C (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    586242 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586243 8vhe:D (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    586244 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    586245 8vhl:A (1.93) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    586246 8vhl:A (1.93) BS02 A1AA2 1.3.5.2 GO:0004151 ... Q02127 38505861
    586247 8vhm:A (2.26) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    586248 8vhm:A (2.26) BS02 A1AA1 1.3.5.2 GO:0004151 ... Q02127 38505861
    586249 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586250 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586251 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586252 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586253 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586254 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 38328249
    586255 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    586256 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 38328249
    586257 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    586258 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 38328249
    586259 8vj6:A (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    586260 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    586261 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    586262 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    586263 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    586264 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    586265 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    586266 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    586267 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    586268 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    586269 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    586270 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    586271 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    586272 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 38328249
    586273 8vjj:A (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586274 8vjj:B (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586275 8vjj:C (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586276 8vjj:D (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586277 8vjk:A (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586278 8vjk:A (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586279 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586280 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586281 8vjk:A (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586282 8vjk:B (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586283 8vjk:B (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586284 8vjk:B (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586285 8vjk:B (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586286 8vjk:B (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586287 8vjk:C (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586288 8vjk:C (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586289 8vjk:C (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586290 8vjk:C (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586291 8vjk:C (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586292 8vjk:D (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586293 8vjk:D (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586294 8vjk:D (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586295 8vjk:D (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586296 8vjk:D (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586297 8vjo:A (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    586298 8vjo:B (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    586299 8vjo:C (2.4) BS01 peptide ? GO:0006826 ... Q1D6H4 38748579
    586300 8vk3:A (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586301 8vk3:B (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586302 8vk3:C (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586303 8vk3:D (3.21) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586304 8vk4:A (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586305 8vk4:A (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586306 8vk4:A (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586307 8vk4:A (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586308 8vk4:A (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586309 8vk4:B (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586310 8vk4:B (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586311 8vk4:B (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586312 8vk4:B (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586313 8vk4:B (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586314 8vk4:C (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586315 8vk4:C (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586316 8vk4:C (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586317 8vk4:C (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586318 8vk4:C (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586319 8vk4:D (3.56) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    586320 8vk4:D (3.56) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    586321 8vk4:D (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    586322 8vk4:D (3.56) BS04 CA ? GO:0002020 ... E9PZQ0 38917010
    586323 8vk4:D (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    586324 8vk4:I (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586325 8vk4:I (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586326 8vk4:J (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586327 8vk4:J (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586328 8vk4:K (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586329 8vk4:K (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586330 8vk4:L (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586331 8vk4:L (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586332 8vk4:M (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586333 8vk4:M (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586334 8vk4:N (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586335 8vk4:N (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586336 8vk4:O (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586337 8vk4:O (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586338 8vk4:P (3.56) BS01 CA ? GO:0005509 ... Q91V77 38917010
    586339 8vk4:P (3.56) BS02 CA ? GO:0005509 ... Q91V77 38917010
    586340 8vka:A (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586341 8vka:A (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    586342 8vka:B (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586343 8vka:B (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    586344 8vka:C (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586345 8vka:C (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    586346 8vkb:A (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586347 8vkb:A (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    586348 8vkb:B (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586349 8vkb:B (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    586350 8vkb:C (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    586351 8vkb:C (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    586352 8vkj:A (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    586353 8vkj:B (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    586354 8vku:A (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586355 8vku:B (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586356 8vku:C (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586357 8vku:D (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586358 8vku:E (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586359 8vku:F (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586360 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0000097 ... Q16878 N/A
    586361 8vl9:D (2.5) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    586362 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0000097 ... Q16878 N/A
    586363 8vlb:D (2.9) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    586364 8vlg:A (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    586365 8vlg:A (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    586366 8vlg:B (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    586367 8vlg:B (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    586368 8vli:A (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    586369 8vli:A (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    586370 8vli:B (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    586371 8vli:B (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    586372 8vls:A (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586373 8vls:B (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586374 8vls:C (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586375 8vls:D (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586376 8vls:E (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586377 8vls:F (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586378 8vls:G (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586379 8vls:H (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586380 8vls:I (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586381 8vls:J (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586382 8vls:K (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586383 8vls:L (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    586384 8vlu:A (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    586385 8vlu:B (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    586386 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    586387 8vlx:B (2.6) BS01 A1ACS ? GO:0003674 ... P23610 N/A
    586388 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586389 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    586390 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586391 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586392 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586393 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586394 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    586395 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586396 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    586397 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    586398 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    586399 8vov:A (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    586400 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218