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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585201 8uzj:A (2.3) BS04 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585202 8uzj:A (2.3) BS05 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585203 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585204 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585205 8uzj:B (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585206 8uzj:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585207 8uzj:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585208 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585209 8uzj:B (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585210 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585211 8uzj:C (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585212 8uzj:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585213 8uzj:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585214 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585215 8uzj:C (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585216 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585217 8uzj:D (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585218 8uzj:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585219 8uzj:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585220 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585221 8uzj:D (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585222 8uzj:E (2.3) BS01 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585223 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585224 8uzj:E (2.3) BS03 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585225 8uzj:E (2.3) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585226 8uzj:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585227 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    585228 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585229 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585230 8uzx:C (5.4) BS01 CA ? GO:0003009 ... P63317 38387550
    585231 8uzx:C (5.4) BS02 CA ? GO:0003009 ... P63317 38387550
    585232 8uzx:C (5.4) BS03 CA ? GO:0003009 ... P63317 38387550
    585233 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585234 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585235 8uzy:C (5.3) BS01 CA ? GO:0003009 ... P63317 38387550
    585236 8uzy:C (5.3) BS02 CA ? GO:0003009 ... P63317 38387550
    585237 8uzy:C (5.3) BS03 CA ? GO:0003009 ... P63317 38387550
    585238 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585239 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585240 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    585241 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    585242 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    585243 8v02:D (2.9) BS01 JZ0 N/A GO:0004984 ... Q177X3 38870275
    585244 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585245 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585246 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    585247 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    585248 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    585249 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585250 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585251 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    585252 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    585253 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    585254 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585255 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585256 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 N/A
    585257 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    585258 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    585259 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585260 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585261 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585262 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585263 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585264 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    585265 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    585266 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    585267 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    585268 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    585269 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    585270 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 N/A
    585271 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585272 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585273 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585274 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585275 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585276 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585277 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585278 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585279 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585280 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585281 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585282 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585283 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    585284 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    585285 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    585286 8v4j:A (1.31) BS01 J7D 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    585287 8v4j:A (1.31) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    585288 8v4k:A (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585289 8v4k:B (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585290 8v4k:C (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585291 8v4k:D (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585292 8v4l:A (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585293 8v4l:B (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585294 8v4l:C (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585295 8v4l:D (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585296 8v4m:A (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585297 8v4m:B (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585298 8v4m:C (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    585299 8v4m:D (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    585300 8v4y:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    585301 8v4y:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    585302 8v4y:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    585303 8v4y:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    585304 8v4y:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    585305 8v4y:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    585306 8v4y:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    585307 8v4y:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    585308 8v4y:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    585309 8v4y:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    585310 8v4y:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    585311 8v4y:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    585312 8v4y:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    585313 8v4y:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    585314 8v4y:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    585315 8v4y:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585316 8v4y:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585317 8v4y:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    585318 8v4y:W (2.8) BS04 BEF 3.6.4.- GO:0000183 ... O60264 38472177
    585319 8v54:A (4.1) BS01 dna N/A GO:0000262 ... P54098 38932681
    585320 8v54:A (4.1) BS02 dna N/A GO:0000262 ... P54098 38932681
    585321 8v55:A (4.2) BS01 dna N/A GO:0000262 ... P54098 38932681
    585322 8v55:A (4.2) BS02 dna N/A GO:0000262 ... P54098 38932681
    585323 8v5g:A (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    585324 8v5g:B (2.5) BS01 YDO 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    585325 8v5m:D (9.22) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585326 8v5n:D (8.56) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585327 8v5o:D (8.99) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585328 8v5r:A (3.0) BS01 dna N/A GO:0000262 ... P54098 38932681
    585329 8v5r:A (3.0) BS02 dna N/A GO:0000262 ... P54098 38932681
    585330 8v5r:A (3.0) BS03 MG N/A GO:0000262 ... P54098 38932681
    585331 8v5r:A (3.0) BS04 D3T N/A GO:0000262 ... P54098 38932681
    585332 8v5y:A (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    585333 8v5y:B (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    585334 8v6g:C (11.16) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585335 8v6g:C (11.16) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    585336 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    585337 8v6g:D (11.16) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585338 8v6h:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585339 8v6h:C (11.11) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    585340 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    585341 8v6h:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585342 8v6i:C (14.06) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585343 8v6i:C (14.06) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585344 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    585345 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585346 8v6j:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585347 8v6j:C (11.11) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    585348 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    585349 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    585350 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585351 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585352 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585353 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585354 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585355 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585356 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585357 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    585358 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    585359 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585360 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585361 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    585362 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585363 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585364 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    585365 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585366 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585367 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    585368 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585369 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585370 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585371 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585372 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585373 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585374 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585375 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585376 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585377 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    585378 8v6v:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    585379 8v6v:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    585380 8v6v:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    585381 8v6v:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    585382 8v6v:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    585383 8v6v:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    585384 8v6v:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    585385 8v6v:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    585386 8v6v:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    585387 8v6v:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    585388 8v6v:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    585389 8v6v:F (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    585390 8v6v:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    585391 8v6v:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    585392 8v6v:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    585393 8v6v:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    585394 8v6v:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585395 8v6v:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585396 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    585397 8v6v:X (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585398 8v6v:X (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    585399 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    585400 8v7l:A (2.9) BS01 dna ? GO:0000786 ... P84233 38472177

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218