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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    585001 8uxf:B (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585002 8uxf:B (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585003 8uxf:B (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    585004 8uxf:C (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585005 8uxf:C (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585006 8uxf:C (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    585007 8uxf:D (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585008 8uxf:D (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585009 8uxf:D (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    585010 8uxg:A (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585011 8uxg:A (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585012 8uxg:A (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    585013 8uxg:A (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    585014 8uxg:B (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585015 8uxg:B (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585016 8uxg:B (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    585017 8uxg:B (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    585018 8uxg:C (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585019 8uxg:C (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585020 8uxg:C (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    585021 8uxg:C (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    585022 8uxg:D (3.08) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585023 8uxg:D (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585024 8uxg:D (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    585025 8uxg:D (3.08) BS04 KVR ? GO:0001666 ... Q92736 39278969
    585026 8uxh:A (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585027 8uxh:A (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585028 8uxh:A (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    585029 8uxh:A (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    585030 8uxh:B (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585031 8uxh:B (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585032 8uxh:B (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    585033 8uxh:B (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    585034 8uxh:C (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585035 8uxh:C (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585036 8uxh:C (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    585037 8uxh:C (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    585038 8uxh:D (3.52) BS01 ZN ? GO:0001666 ... Q92736 39278969
    585039 8uxh:D (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    585040 8uxh:D (3.52) BS03 CA ? GO:0001666 ... Q92736 39278969
    585041 8uxh:D (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    585042 8uxi:A (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585043 8uxi:A (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585044 8uxi:A (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    585045 8uxi:A (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585046 8uxi:B (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585047 8uxi:B (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585048 8uxi:B (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    585049 8uxi:B (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585050 8uxi:C (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585051 8uxi:C (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585052 8uxi:C (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    585053 8uxi:C (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585054 8uxi:D (3.29) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585055 8uxi:D (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585056 8uxi:D (3.29) BS03 CA ? GO:0001666 ... Q92736 N/A
    585057 8uxi:D (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585058 8uxl:A (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585059 8uxl:A (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585060 8uxl:A (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    585061 8uxl:A (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585062 8uxl:B (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585063 8uxl:B (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585064 8uxl:B (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    585065 8uxl:B (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585066 8uxl:C (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585067 8uxl:C (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585068 8uxl:C (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    585069 8uxl:C (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585070 8uxl:D (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585071 8uxl:D (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585072 8uxl:D (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    585073 8uxl:D (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    585074 8uxl:I (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585075 8uxl:I (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585076 8uxl:I (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585077 8uxl:I (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585078 8uxl:J (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585079 8uxl:J (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585080 8uxl:J (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585081 8uxl:J (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585082 8uxl:K (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585083 8uxl:K (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585084 8uxl:K (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585085 8uxl:K (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585086 8uxl:L (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585087 8uxl:L (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585088 8uxl:L (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585089 8uxl:L (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585090 8uxm:A (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585091 8uxm:A (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585092 8uxm:A (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    585093 8uxm:B (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585094 8uxm:B (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585095 8uxm:B (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    585096 8uxm:C (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585097 8uxm:C (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585098 8uxm:C (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    585099 8uxm:D (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    585100 8uxm:D (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585101 8uxm:D (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    585102 8uxm:I (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585103 8uxm:I (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585104 8uxm:I (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585105 8uxm:I (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585106 8uxm:J (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585107 8uxm:J (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585108 8uxm:J (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585109 8uxm:J (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585110 8uxm:K (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585111 8uxm:K (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585112 8uxm:K (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585113 8uxm:K (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585114 8uxm:L (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    585115 8uxm:L (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    585116 8uxm:L (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    585117 8uxm:L (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    585118 8uxw:A (2.7) BS01 ADP ? GO:0003779 ... P32390 38448439
    585119 8uxw:B (2.7) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    585120 8uxw:H (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585121 8uxw:I (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585122 8uxw:M (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585123 8uxw:N (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585124 8uxw:O (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585125 8uxw:P (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585126 8uxw:Q (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585127 8uxw:R (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585128 8uxx:A (3.2) BS01 ADP ? GO:0003779 ... P32390 38448439
    585129 8uxx:A (3.2) BS02 BEF ? GO:0003779 ... P32390 38448439
    585130 8uxx:B (3.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    585131 8uxx:H (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585132 8uxx:I (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585133 8uxx:M (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585134 8uxx:M (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585135 8uxx:N (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585136 8uxx:N (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585137 8uxx:O (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585138 8uxx:O (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585139 8uxx:P (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585140 8uxx:P (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585141 8uxx:Q (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585142 8uxx:Q (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585143 8uxx:R (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585144 8uxx:R (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585145 8uy1:A (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585146 8uy1:B (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585147 8uy1:C (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585148 8uy1:D (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585149 8uy2:A (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585150 8uy2:A (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    585151 8uy2:A (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    585152 8uy2:B (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585153 8uy2:B (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    585154 8uy2:B (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    585155 8uy2:C (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585156 8uy2:C (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    585157 8uy2:C (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    585158 8uy2:D (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    585159 8uy2:D (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    585160 8uy2:D (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    585161 8uyd:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585162 8uyd:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585163 8uz0:J (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585164 8uz0:K (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585165 8uz0:L (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585166 8uz0:M (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585167 8uz0:N (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585168 8uz0:O (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585169 8uz0:P (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585170 8uz0:Q (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585171 8uz0:R (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585172 8uz1:J (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585173 8uz1:J (3.6) BS02 MG 3.6.4.- GO:0001725 ... P68139 38448439
    585174 8uz1:J (3.6) BS03 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585175 8uz1:K (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585176 8uz1:K (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585177 8uz1:L (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585178 8uz1:L (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585179 8uz1:M (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585180 8uz1:M (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585181 8uz1:N (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585182 8uz1:N (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585183 8uz1:O (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585184 8uz1:O (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585185 8uz1:P (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585186 8uz1:P (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585187 8uz1:Q (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585188 8uz1:Q (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585189 8uz1:R (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    585190 8uz1:R (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    585191 8uz5:A (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585192 8uz5:B (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585193 8uz6:A (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585194 8uz6:B (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    585195 8uzh:A (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    585196 8uzh:A (2.8) BS02 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    585197 8uzh:B (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19
    Q12306    		 38485491
    585198 8uzj:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    585199 8uzj:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    585200 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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