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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584801 8uu8:p (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    584802 8uu8:q (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    584803 8uu8:r (3.1) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    584804 8uu8:s (3.1) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    584805 8uu8:t (3.1) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    584806 8uu8:v (3.1) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    584807 8uu8:v (3.1) BS02 MG ? GO:0003924 ... Q8Y8Y0 38407413
    584808 8uu9:1 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    584809 8uu9:2 (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    584810 8uu9:3 (3.1) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    584811 8uu9:4 (3.1) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    584812 8uu9:4 (3.1) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    584813 8uu9:5 (3.1) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    584814 8uu9:5 (3.1) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    584815 8uu9:6 (3.1) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    584816 8uu9:7 (3.1) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    584817 8uu9:8 (3.1) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    584818 8uu9:8 (3.1) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    584819 8uu9:C (3.1) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    584820 8uu9:C (3.1) BS02 rna ? GO:0002181 ... A0A0U5A742 38407413
    584821 8uu9:C (3.1) BS03 MG ? GO:0002181 ... A0A0U5A742 38407413
    584822 8uu9:D (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    584823 8uu9:E (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    584824 8uu9:F (3.1) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584825 8uu9:F (3.1) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584826 8uu9:G (3.1) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    584827 8uu9:L (3.1) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    584828 8uu9:M (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584829 8uu9:M (3.1) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584830 8uu9:N (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    584831 8uu9:O (3.1) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584832 8uu9:O (3.1) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584833 8uu9:P (3.1) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    584834 8uu9:Q (3.1) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584835 8uu9:Q (3.1) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584836 8uu9:R (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584837 8uu9:S (3.1) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    584838 8uu9:T (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    584839 8uu9:U (3.1) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    584840 8uu9:V (3.1) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    584841 8uu9:W (3.1) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    584842 8uu9:Y (3.1) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    584843 8uu9:Y (3.1) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    584844 8uu9:Z (3.1) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    584845 8uu9:b (3.1) BS01 rna ? GO:0003735 ... Q92B01 38407413
    584846 8uu9:c (3.1) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    584847 8uu9:d (3.1) BS01 rna ? GO:0003723 ... Q92BB2 38407413
    584848 8uu9:e (3.1) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    584849 8uu9:f (3.1) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    584850 8uu9:g (3.1) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    584851 8uu9:h (3.1) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    584852 8uu9:i (3.1) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    584853 8uu9:j (3.1) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    584854 8uu9:k (3.1) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    584855 8uu9:l (3.1) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    584856 8uu9:m (3.1) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    584857 8uu9:n (3.1) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    584858 8uu9:n (3.1) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    584859 8uu9:o (3.1) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    584860 8uu9:o (3.1) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    584861 8uu9:p (3.1) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    584862 8uu9:q (3.1) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    584863 8uu9:r (3.1) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    584864 8uu9:s (3.1) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    584865 8uu9:t (3.1) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    584866 8uu9:v (3.1) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    584867 8uu9:v (3.1) BS02 MG ? GO:0003924 ... Q8Y8Y0 38407413
    584868 8uua:1 (2.7) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    584869 8uua:2 (2.7) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    584870 8uua:3 (2.7) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    584871 8uua:4 (2.7) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    584872 8uua:4 (2.7) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    584873 8uua:5 (2.7) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    584874 8uua:5 (2.7) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    584875 8uua:6 (2.7) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    584876 8uua:6 (2.7) BS02 MG ? GO:0003735 ... A0A660JKZ6 38407413
    584877 8uua:7 (2.7) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    584878 8uua:8 (2.7) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    584879 8uua:8 (2.7) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    584880 8uua:C (2.7) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    584881 8uua:C (2.7) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    584882 8uua:D (2.7) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    584883 8uua:D (2.7) BS02 MG ? GO:0003735 ... A0A0U5ADD0 38407413
    584884 8uua:E (2.7) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    584885 8uua:E (2.7) BS02 MG ? GO:0003735 ... A0A0U4VSH7 38407413
    584886 8uua:F (2.7) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584887 8uua:F (2.7) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584888 8uua:G (2.7) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    584889 8uua:L (2.7) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    584890 8uua:M (2.7) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584891 8uua:M (2.7) BS02 MG ? GO:0003735 ... A0A0U5AP82 38407413
    584892 8uua:N (2.7) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    584893 8uua:O (2.7) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584894 8uua:O (2.7) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584895 8uua:P (2.7) BS01 rna ? GO:0003735 ... A0A0U5AWM7 38407413
    584896 8uua:Q (2.7) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584897 8uua:Q (2.7) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584898 8uua:R (2.7) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584899 8uua:S (2.7) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    584900 8uua:T (2.7) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    584901 8uua:U (2.7) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    584902 8uua:V (2.7) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    584903 8uua:V (2.7) BS02 MG ? GO:0000027 ... A0A0U4MTC5 38407413
    584904 8uua:W (2.7) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    584905 8uua:Y (2.7) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    584906 8uua:Z (2.7) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    584907 8uua:Z (2.7) BS02 MG ? GO:0003735 ... A0A660JJV9 38407413
    584908 8uua:v (2.7) BS01 rna ? GO:0003924 ... Q8Y8Y0 38407413
    584909 8uuk:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    584910 8uuk:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    584911 8uuk:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    584912 8uuk:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    584913 8uuk:C (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    584914 8uuk:C (2.5) BS06 AV0 ? GO:0005886 ... I3L8V6 38184688
    584915 8uuk:D (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    584916 8uuk:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    584917 8uuk:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    584918 8uuk:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    584919 8uuk:D (2.5) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    584920 8uuk:D (2.5) BS06 AV0 ? GO:0005886 ... I3L8V6 38184688
    584921 8uux:A (2.74) BS01 CA ? GO:0019049 ... Q2V8W4 38236007
    584922 8uux:B (2.74) BS01 CA ? GO:0019049 ... Q2V8W4 38236007
    584923 8uv0:A (1.55) BS01 XKU 2.7.11.22 GO:0000082 ... P24941 38325398
    584924 8uv3:A (2.72) BS01 MG ? GO:0019049 ... Q2V8W4 38236007
    584925 8uv3:C (2.72) BS01 MG ? GO:0019049 ... Q2V8W4 38236007
    584926 8uvu:A (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    584927 8uvu:A (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    584928 8uvu:B (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    584929 8uvu:B (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    584930 8uvu:C (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    584931 8uvu:C (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    584932 8uvu:D (3.0) BS01 BDF ? GO:0001582 ... B3GTD7 38447670
    584933 8uvu:D (3.0) BS02 FRU ? GO:0001582 ... B3GTD7 38447670
    584934 8uvz:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P11045 N/A
    584935 8uw0:A (0.93) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    584936 8uw0:A (0.93) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    584937 8uw6:A (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584938 8uw6:A (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584939 8uw6:B (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584940 8uw6:B (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584941 8uw6:B (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584942 8uw6:C (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584943 8uw6:C (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584944 8uw6:D (1.8) BS01 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584945 8uw6:D (1.8) BS02 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584946 8uw6:D (1.8) BS03 ZN 3.5.1.16 GO:0005737 ... P23908 39055043
    584947 8uwa:B (4.02) BS01 MAN ? GO:0019031 ... C6KNH7 38670113
    584948 8ux1:A (2.5) BS01 dna ? GO:0000785 ... P02299 N/A
    584949 8ux1:A (2.5) BS02 dna ? GO:0000785 ... P02299 N/A
    584950 8ux1:B (2.5) BS01 dna ? GO:0000228 ... P84040 N/A
    584951 8ux1:B (2.5) BS02 dna ? GO:0000228 ... P84040 N/A
    584952 8ux1:C (2.5) BS01 dna ? GO:0000786 ... P84051 N/A
    584953 8ux1:C (2.5) BS02 dna ? GO:0000786 ... P84051 N/A
    584954 8ux1:D (2.5) BS01 dna ? GO:0000786 ... P02283 N/A
    584955 8ux1:D (2.5) BS02 dna ? GO:0000786 ... P02283 N/A
    584956 8ux1:E (2.5) BS01 dna ? GO:0000785 ... P02299 N/A
    584957 8ux1:E (2.5) BS02 dna ? GO:0000785 ... P02299 N/A
    584958 8ux1:F (2.5) BS01 dna ? GO:0000228 ... P84040 N/A
    584959 8ux1:F (2.5) BS02 dna ? GO:0000228 ... P84040 N/A
    584960 8ux1:G (2.5) BS01 dna ? GO:0000786 ... P84051 N/A
    584961 8ux1:G (2.5) BS02 dna ? GO:0000786 ... P84051 N/A
    584962 8ux1:H (2.5) BS01 dna ? GO:0000786 ... P02283 N/A
    584963 8ux1:H (2.5) BS02 dna ? GO:0000786 ... P02283 N/A
    584964 8ux7:A (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    584965 8ux7:A (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    584966 8ux7:A (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    584967 8ux7:B (2.2) BS01 MN ? GO:0005509 ... B3EWJ2 N/A
    584968 8ux7:B (2.2) BS02 CA ? GO:0005509 ... B3EWJ2 N/A
    584969 8ux7:B (2.2) BS03 XMM ? GO:0005509 ... B3EWJ2 N/A
    584970 8uxc:A (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584971 8uxc:A (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584972 8uxc:A (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584973 8uxc:B (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584974 8uxc:B (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584975 8uxc:B (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584976 8uxc:C (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584977 8uxc:C (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584978 8uxc:C (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584979 8uxc:D (2.86) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584980 8uxc:D (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584981 8uxc:D (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584982 8uxe:A (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584983 8uxe:A (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584984 8uxe:A (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584985 8uxe:A (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    584986 8uxe:B (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584987 8uxe:B (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584988 8uxe:B (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584989 8uxe:B (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    584990 8uxe:C (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584991 8uxe:C (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584992 8uxe:C (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584993 8uxe:C (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    584994 8uxe:D (3.53) BS01 ZN ? GO:0001666 ... Q92736 39278969
    584995 8uxe:D (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    584996 8uxe:D (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    584997 8uxe:D (3.53) BS04 KVR ? GO:0001666 ... Q92736 39278969
    584998 8uxf:A (3.13) BS01 ZN ? GO:0001666 ... Q92736 N/A
    584999 8uxf:A (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    585000 8uxf:A (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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