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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584401 8usw:C (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    584402 8ut1:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584403 8ut1:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584404 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584405 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584406 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584407 8ut1:B (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584408 8ut1:B (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584409 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584410 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584411 8ut1:C (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584412 8ut1:C (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584413 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584414 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584415 8ut1:D (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584416 8ut1:D (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584417 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584418 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584419 8ut1:E (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584420 8ut1:E (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584421 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584422 8utb:A (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584423 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584424 8utb:A (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584425 8utb:A (2.3) BS04 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584426 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584427 8utb:B (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584428 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584429 8utb:B (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584430 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584431 8utb:B (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584432 8utb:C (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584433 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584434 8utb:C (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584435 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584436 8utb:C (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584437 8utb:D (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584438 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584439 8utb:D (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584440 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584441 8utb:D (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584442 8utb:E (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584443 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584444 8utb:E (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584445 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584446 8utb:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    584447 8utl:A (1.56) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    584448 8utl:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    584449 8utn:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584450 8utn:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584451 8utn:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584452 8utn:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584453 8utn:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584454 8utn:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584455 8utn:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584456 8uto:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584457 8uto:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584458 8uto:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584459 8uto:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584460 8uto:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584461 8uto:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584462 8uto:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584463 8utp:A (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584464 8utp:B (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584465 8utp:B (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584466 8utp:E (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584467 8utp:I (3.2) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584468 8utp:I (3.2) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584469 8utp:S (3.2) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584470 8utq:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584471 8utq:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584472 8utq:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584473 8utq:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584474 8utq:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584475 8utq:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584476 8utr:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584477 8utr:A (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584478 8utr:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584479 8utr:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584480 8uts:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584481 8uts:B (2.7) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584482 8uts:B (2.7) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584483 8utt:A (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584484 8utt:B (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584485 8utt:B (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584486 8utt:E (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584487 8utt:I (3.1) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584488 8utt:I (3.1) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584489 8utt:S (3.1) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584490 8utu:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584491 8utu:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584492 8utu:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584493 8utu:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584494 8utv:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584495 8utv:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584496 8utv:B (3.0) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584497 8utv:B (3.0) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584498 8utv:E (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584499 8utv:E (3.0) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584500 8utw:A (3.4) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584501 8utw:A (3.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584502 8utw:B (3.4) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584503 8utw:B (3.4) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584504 8uty:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584505 8uty:B (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584506 8uty:B (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584507 8uty:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584508 8uty:I (3.3) BS01 GDP ? GO:0005525 ... A0A287AGU7 38956021
    584509 8uty:I (3.3) BS02 TA1 ? GO:0005525 ... A0A287AGU7 38956021
    584510 8uty:S (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38956021
    584511 8uu4:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    584512 8uu4:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    584513 8uu4:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    584514 8uu4:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    584515 8uu4:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    584516 8uu4:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    584517 8uu4:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    584518 8uu4:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    584519 8uu4:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    584520 8uu4:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    584521 8uu4:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    584522 8uu4:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    584523 8uu4:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    584524 8uu4:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    584525 8uu4:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584526 8uu4:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584527 8uu4:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    584528 8uu4:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    584529 8uu4:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584530 8uu4:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584531 8uu4:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    584532 8uu4:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584533 8uu4:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584534 8uu4:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    584535 8uu4:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584536 8uu4:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584537 8uu4:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584538 8uu4:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584539 8uu4:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    584540 8uu4:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    584541 8uu4:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    584542 8uu4:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    584543 8uu4:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    584544 8uu4:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    584545 8uu4:Y (3.0) BS02 rna ? GO:0003735 ... A0A660JMC7 38407413
    584546 8uu4:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    584547 8uu4:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    584548 8uu4:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    584549 8uu4:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    584550 8uu4:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    584551 8uu4:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    584552 8uu4:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    584553 8uu4:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    584554 8uu4:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    584555 8uu4:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    584556 8uu4:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    584557 8uu4:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    584558 8uu4:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    584559 8uu4:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    584560 8uu4:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    584561 8uu4:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    584562 8uu4:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    584563 8uu4:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    584564 8uu4:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    584565 8uu4:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    584566 8uu4:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    584567 8uu4:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    584568 8uu4:w (3.0) BS01 rna ? GO:0005737 ... A0A660JMK7 38407413
    584569 8uu5:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    584570 8uu5:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    584571 8uu5:2 (3.0) BS02 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    584572 8uu5:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    584573 8uu5:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    584574 8uu5:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    584575 8uu5:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    584576 8uu5:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    584577 8uu5:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    584578 8uu5:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    584579 8uu5:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    584580 8uu5:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    584581 8uu5:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    584582 8uu5:C (3.0) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    584583 8uu5:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    584584 8uu5:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    584585 8uu5:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584586 8uu5:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    584587 8uu5:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    584588 8uu5:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    584589 8uu5:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584590 8uu5:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    584591 8uu5:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    584592 8uu5:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584593 8uu5:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    584594 8uu5:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    584595 8uu5:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584596 8uu5:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    584597 8uu5:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584598 8uu5:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    584599 8uu5:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    584600 8uu5:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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