Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 2912 2913 2914 2915 2916 2917 2918 2919 2920 2921 2922 2923 2924 2925 2926 2927 2928 2929 2930 2931 2932 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584201 8urh:z (5.7) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584202 8uri:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    584203 8uri:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584204 8uri:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584205 8uri:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584206 8uri:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584207 8uri:AB (5.3) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584208 8uri:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584209 8uri:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584210 8uri:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584211 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584212 8uri:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584213 8uri:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584214 8uri:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584215 8uri:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584216 8uri:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584217 8uri:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584218 8uri:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584219 8uri:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584220 8uri:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584221 8uri:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584222 8uri:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584223 8uri:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    584224 8uri:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    584225 8uri:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    584226 8uri:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584227 8uri:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584228 8uri:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584229 8uri:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584230 8uri:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584231 8uri:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584232 8uri:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584233 8uri:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584234 8uri:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584235 8uri:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584236 8uri:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    584237 8uri:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    584238 8uri:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584239 8uri:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584240 8uri:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584241 8uri:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584242 8uri:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584243 8uri:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584244 8uri:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584245 8uri:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584246 8uri:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584247 8uri:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584248 8uri:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584249 8urq:A (3.3) BS01 dna N/A GO:0000228 ... P23179 N/A
    584250 8urq:A (3.3) BS02 MG N/A GO:0000228 ... P23179 N/A
    584251 8urq:B (3.3) BS01 dna N/A GO:0000794 ... Q02721 N/A
    584252 8urq:F (3.3) BS01 dna N/A GO:0000794 ... P33323 N/A
    584253 8uru:A (3.7) BS01 dna N/A GO:0000228 ... P23179 N/A
    584254 8uru:A (3.7) BS02 MG N/A GO:0000228 ... P23179 N/A
    584255 8uru:F (3.7) BS01 dna N/A GO:0000794 ... P33323 N/A
    584256 8urw:C (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    584257 8urw:C (2.79) BS02 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    584258 8urw:C (2.79) BS03 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    584259 8urw:D (2.79) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    584260 8urw:D (2.79) BS02 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    584261 8urw:D (2.79) BS03 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    584262 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    584263 8urw:D (2.79) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    584264 8urw:G (2.79) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    584265 8urw:Z (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    584266 8urw:Z (2.79) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    584267 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    584268 8urx:1 (6.6) BS01 rna ? GO:0002181 ... P61175 39117885
    584269 8urx:9 (6.6) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584270 8urx:AA (6.6) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584271 8urx:AA (6.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584272 8urx:AA (6.6) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584273 8urx:AB (6.6) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584274 8urx:AE (6.6) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584275 8urx:AE (6.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584276 8urx:AE (6.6) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584277 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584278 8urx:AE (6.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584279 8urx:AE (6.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584280 8urx:C (6.6) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584281 8urx:E (6.6) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584282 8urx:F (6.6) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584283 8urx:G (6.6) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584284 8urx:I (6.6) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584285 8urx:I (6.6) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584286 8urx:J (6.6) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584287 8urx:K (6.6) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584288 8urx:K (6.6) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584289 8urx:L (6.6) BS01 rna ? GO:0002181 ... P02358 39117885
    584290 8urx:M (6.6) BS01 rna ? GO:0000028 ... P02359 39117885
    584291 8urx:M (6.6) BS02 rna ? GO:0000028 ... P02359 39117885
    584292 8urx:Q (6.6) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584293 8urx:R (6.6) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584294 8urx:U (6.6) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584295 8urx:X (6.6) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584296 8urx:X (6.6) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584297 8urx:Y (6.6) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584298 8urx:b (6.6) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584299 8urx:b (6.6) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584300 8urx:c (6.6) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584301 8urx:g (6.6) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584302 8urx:h (6.6) BS01 rna ? GO:0000027 ... P60422 39117885
    584303 8urx:j (6.6) BS01 rna ? GO:0000027 ... P60438 39117885
    584304 8urx:l (6.6) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584305 8urx:m (6.6) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584306 8urx:o (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584307 8urx:p (6.6) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584308 8urx:q (6.6) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584309 8urx:t (6.6) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584310 8urx:t (6.6) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584311 8urx:u (6.6) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584312 8urx:v (6.6) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584313 8urx:v (6.6) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584314 8urx:z (6.6) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584315 8ury:0 (3.1) BS01 rna ? GO:0003735 ... C3SSG2 39117885
    584316 8ury:1 (3.1) BS01 rna ? GO:0002181 ... P61175 39117885
    584317 8ury:2 (3.1) BS01 rna ? GO:0000027 ... C3SQV2 39117885
    584318 8ury:3 (3.1) BS01 rna ? GO:0005829 ... C3SQZ7 39117885
    584319 8ury:4 (3.1) BS01 rna ? GO:0000027 ... P68919 39117885
    584320 8ury:9 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584321 8ury:AA (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584322 8ury:AA (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584323 8ury:AA (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584324 8ury:AB (3.1) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584325 8ury:AE (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584326 8ury:AE (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584327 8ury:AE (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584328 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584329 8ury:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584330 8ury:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584331 8ury:C (3.1) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584332 8ury:E (3.1) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584333 8ury:F (3.1) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584334 8ury:G (3.1) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584335 8ury:I (3.1) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584336 8ury:I (3.1) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584337 8ury:J (3.1) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584338 8ury:K (3.1) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584339 8ury:K (3.1) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584340 8ury:M (3.1) BS01 rna ? GO:0000028 ... P02359 39117885
    584341 8ury:M (3.1) BS02 rna ? GO:0000028 ... P02359 39117885
    584342 8ury:N (3.1) BS01 rna ? GO:0000028 ... C3SR12 39117885
    584343 8ury:O (3.1) BS01 rna ? GO:0000028 ... C3SRY2 39117885
    584344 8ury:P (3.1) BS01 rna ? GO:0000049 ... P0A7R5 39117885
    584345 8ury:Q (3.1) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    584346 8ury:R (3.1) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584347 8ury:T (3.1) BS01 rna ? GO:0000028 ... C3SSQ7 39117885
    584348 8ury:T (3.1) BS02 rna ? GO:0000028 ... C3SSQ7 39117885
    584349 8ury:U (3.1) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584350 8ury:V (3.1) BS01 rna ? GO:0000028 ... C3SQY7 39117885
    584351 8ury:W (3.1) BS01 rna ? GO:0000028 ... C3SQW2 39117885
    584352 8ury:X (3.1) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584353 8ury:X (3.1) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584354 8ury:Y (3.1) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584355 8ury:b (3.1) BS01 rna ? GO:0003735 ... P0A7M0 39117885
    584356 8ury:b (3.1) BS02 rna ? GO:0003735 ... P0A7M0 39117885
    584357 8ury:c (3.1) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584358 8ury:e (3.1) BS01 rna ? GO:0005840 ... P0A7M8 39117885
    584359 8ury:f (3.1) BS01 rna ? GO:0005840 ... C3SR32 39117885
    584360 8ury:f (3.1) BS02 rna ? GO:0005840 ... C3SR32 39117885
    584361 8ury:g (3.1) BS01 rna ? GO:0005840 ... P0A7N0 39117885
    584362 8ury:h (3.1) BS01 rna ? GO:0000027 ... P60422 39117885
    584363 8ury:i (3.1) BS01 rna ? GO:0005840 ... C3TE02 39117885
    584364 8ury:j (3.1) BS01 rna ? GO:0000027 ... P60438 39117885
    584365 8ury:k (3.1) BS01 rna ? GO:0003735 ... C3SME7 39117885
    584366 8ury:l (3.1) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584367 8ury:m (3.1) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584368 8ury:n (3.1) BS01 rna ? GO:0000049 ... A0A140N5A3 39117885
    584369 8ury:n (3.1) BS02 rna ? GO:0000049 ... A0A140N5A3 39117885
    584370 8ury:n (3.1) BS03 rna ? GO:0000049 ... A0A140N5A3 39117885
    584371 8ury:o (3.1) BS01 rna ? GO:0003735 ... P0A7Q2 39117885
    584372 8ury:p (3.1) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584373 8ury:q (3.1) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584374 8ury:r (3.1) BS01 rna ? GO:0005840 ... C3SFP2 39117885
    584375 8ury:s (3.1) BS01 rna ? GO:0003729 ... P0AA12 39117885
    584376 8ury:t (3.1) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584377 8ury:t (3.1) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584378 8ury:u (3.1) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584379 8ury:v (3.1) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584380 8ury:v (3.1) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584381 8ury:w (3.1) BS01 rna ? GO:0003735 ... C3SR72 39117885
    584382 8ury:x (3.1) BS01 rna ? GO:0005737 ... A0A828U007 39117885
    584383 8ury:x (3.1) BS02 rna ? GO:0005737 ... A0A828U007 39117885
    584384 8ury:y (3.1) BS01 rna ? GO:0003735 ... P0A7K8 39117885
    584385 8ury:z (3.1) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584386 8us1:A (2.65) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    584387 8us1:A (2.65) BS02 C8E N/A GO:0009279 ... Q9I0U1 38959031
    584388 8us3:A (3.1) BS01 C8E N/A GO:0009279 ... Q9I0U1 38959031
    584389 8usm:A (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    584390 8usm:B (1.63) BS01 XC8 ? GO:0007155 ... P77588 38308631
    584391 8usr:A (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    584392 8usr:A (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    584393 8usr:B (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    584394 8usr:B (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    584395 8usr:D (1.83) BS01 XCE ? GO:0002225 ... Q16552 38574366
    584396 8usr:D (1.83) BS02 XCE ? GO:0002225 ... Q16552 38574366
    584397 8uss:A (1.47) BS01 XCW ? GO:0002225 ... Q16552 38574366
    584398 8usu:A (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    584399 8usu:B (2.97) BS01 NAD 1.1.1.316 GO:0000166 ... A0A8B8PVT3 38224521
    584400 8usw:A (4.23) BS01 DQC ? GO:0005216 ... Q05586 38598639
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218