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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    584001 8uqm:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584002 8uqm:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584003 8uqm:C (5.3) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584004 8uqm:E (5.3) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584005 8uqm:F (5.3) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584006 8uqm:G (5.3) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584007 8uqm:I (5.3) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584008 8uqm:I (5.3) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584009 8uqm:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584010 8uqm:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584011 8uqm:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584012 8uqm:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    584013 8uqm:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    584014 8uqm:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    584015 8uqm:Q (5.3) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584016 8uqm:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584017 8uqm:U (5.3) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584018 8uqm:X (5.3) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584019 8uqm:X (5.3) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584020 8uqm:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584021 8uqm:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584022 8uqm:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584023 8uqm:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584024 8uqm:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584025 8uqm:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    584026 8uqm:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    584027 8uqm:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584028 8uqm:m (5.3) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584029 8uqm:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584030 8uqm:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584031 8uqm:q (5.3) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584032 8uqm:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584033 8uqm:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584034 8uqm:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584035 8uqm:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584036 8uqm:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584037 8uqm:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584038 8uqn:A (3.4) BS01 GDP ? GO:0001508 ... P50148 37991948
    584039 8uqn:A (3.4) BS02 ALF ? GO:0001508 ... P50148 37991948
    584040 8uqn:A (3.4) BS03 MG ? GO:0001508 ... P50148 37991948
    584041 8uqn:B (3.4) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    584042 8uqo:A (3.37) BS01 GDP ? GO:0001508 ... P50148 37991948
    584043 8uqo:A (3.37) BS02 ALF ? GO:0001508 ... P50148 37991948
    584044 8uqo:A (3.37) BS03 MG ? GO:0001508 ... P50148 37991948
    584045 8uqo:Q (3.37) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37991948
    584046 8uqp:1 (3.8) BS01 rna ? GO:0002181 ... P61175 39117885
    584047 8uqp:9 (3.8) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584048 8uqp:AA (3.8) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584049 8uqp:AA (3.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584050 8uqp:AA (3.8) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584051 8uqp:AB (3.8) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584052 8uqp:AE (3.8) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584053 8uqp:AE (3.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584054 8uqp:AE (3.8) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584055 8uqp:AE (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584056 8uqp:AE (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584057 8uqp:AE (3.8) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584058 8uqp:AF (3.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    584059 8uqp:C (3.8) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584060 8uqp:E (3.8) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584061 8uqp:F (3.8) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584062 8uqp:G (3.8) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584063 8uqp:I (3.8) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584064 8uqp:I (3.8) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584065 8uqp:J (3.8) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584066 8uqp:K (3.8) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584067 8uqp:K (3.8) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584068 8uqp:L (3.8) BS01 rna ? GO:0002181 ... P02358 39117885
    584069 8uqp:M (3.8) BS01 rna ? GO:0000028 ... P02359 39117885
    584070 8uqp:M (3.8) BS02 rna ? GO:0000028 ... P02359 39117885
    584071 8uqp:Q (3.8) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584072 8uqp:R (3.8) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584073 8uqp:U (3.8) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584074 8uqp:X (3.8) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584075 8uqp:X (3.8) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584076 8uqp:Y (3.8) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584077 8uqp:b (3.8) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584078 8uqp:b (3.8) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584079 8uqp:c (3.8) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584080 8uqp:g (3.8) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584081 8uqp:h (3.8) BS01 rna ? GO:0000027 ... P60422 39117885
    584082 8uqp:j (3.8) BS01 rna ? GO:0000027 ... P60438 39117885
    584083 8uqp:l (3.8) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584084 8uqp:m (3.8) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584085 8uqp:o (3.8) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584086 8uqp:p (3.8) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584087 8uqp:q (3.8) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584088 8uqp:t (3.8) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584089 8uqp:t (3.8) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584090 8uqp:u (3.8) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584091 8uqp:v (3.8) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584092 8uqp:v (3.8) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584093 8uqp:z (3.8) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584094 8uqv:A (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584095 8uqv:A (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584096 8uqv:A (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584097 8uqv:B (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584098 8uqv:B (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584099 8uqv:B (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584100 8uqv:C (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584101 8uqv:C (3.6) BS02 XVC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584102 8uqv:C (3.6) BS03 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584103 8uqv:D (3.6) BS01 GLC 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584104 8uqv:D (3.6) BS02 CA 3.2.1.1
    5.4.99.16    		 GO:0000023 ... P9WQ19 38485491
    584105 8ur0:1 (3.4) BS01 rna ? GO:0002181 ... P61175 39117885
    584106 8ur0:9 (3.4) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584107 8ur0:AA (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584108 8ur0:AA (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584109 8ur0:AA (3.4) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584110 8ur0:AB (3.4) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584111 8ur0:AE (3.4) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584112 8ur0:AE (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584113 8ur0:AE (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584114 8ur0:AE (3.4) BS04 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584115 8ur0:AE (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584116 8ur0:AE (3.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584117 8ur0:AE (3.4) BS07 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584118 8ur0:C (3.4) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584119 8ur0:E (3.4) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584120 8ur0:F (3.4) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584121 8ur0:G (3.4) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584122 8ur0:I (3.4) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584123 8ur0:I (3.4) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584124 8ur0:J (3.4) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584125 8ur0:K (3.4) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584126 8ur0:K (3.4) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584127 8ur0:L (3.4) BS01 rna ? GO:0002181 ... P02358 39117885
    584128 8ur0:M (3.4) BS01 rna ? GO:0000028 ... P02359 39117885
    584129 8ur0:M (3.4) BS02 rna ? GO:0000028 ... P02359 39117885
    584130 8ur0:Q (3.4) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584131 8ur0:R (3.4) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584132 8ur0:U (3.4) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584133 8ur0:X (3.4) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584134 8ur0:X (3.4) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584135 8ur0:Y (3.4) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584136 8ur0:b (3.4) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584137 8ur0:b (3.4) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584138 8ur0:c (3.4) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584139 8ur0:g (3.4) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584140 8ur0:h (3.4) BS01 rna ? GO:0000027 ... P60422 39117885
    584141 8ur0:j (3.4) BS01 rna ? GO:0000027 ... P60438 39117885
    584142 8ur0:l (3.4) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584143 8ur0:m (3.4) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584144 8ur0:o (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584145 8ur0:p (3.4) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584146 8ur0:q (3.4) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584147 8ur0:t (3.4) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584148 8ur0:t (3.4) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584149 8ur0:u (3.4) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584150 8ur0:v (3.4) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584151 8ur0:v (3.4) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    584152 8ur0:z (3.4) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    584153 8ur2:B (1.9) BS01 PYR 5.3.2.1
    5.3.3.12    		 GO:0005125 ... A2DXT4 N/A
    584154 8urh:1 (5.7) BS01 rna ? GO:0002181 ... P61175 39117885
    584155 8urh:9 (5.7) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    584156 8urh:AA (5.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584157 8urh:AA (5.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584158 8urh:AA (5.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    584159 8urh:AB (5.7) BS01 dna ? GO:0001073 ... C3SK02 39117885
    584160 8urh:AE (5.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584161 8urh:AE (5.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584162 8urh:AE (5.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584163 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584164 8urh:AE (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584165 8urh:AE (5.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    584166 8urh:AF (5.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    584167 8urh:C (5.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    584168 8urh:E (5.7) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    584169 8urh:F (5.7) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    584170 8urh:G (5.7) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    584171 8urh:I (5.7) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    584172 8urh:I (5.7) BS02 rna ? GO:0003729 ... B7MCS9 39117885
    584173 8urh:J (5.7) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    584174 8urh:K (5.7) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    584175 8urh:K (5.7) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    584176 8urh:L (5.7) BS01 rna ? GO:0002181 ... P02358 39117885
    584177 8urh:M (5.7) BS01 rna ? GO:0000028 ... P02359 39117885
    584178 8urh:M (5.7) BS02 rna ? GO:0000028 ... P02359 39117885
    584179 8urh:Q (5.7) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    584180 8urh:R (5.7) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    584181 8urh:U (5.7) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    584182 8urh:X (5.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584183 8urh:X (5.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    584184 8urh:Y (5.7) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    584185 8urh:b (5.7) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    584186 8urh:b (5.7) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    584187 8urh:c (5.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    584188 8urh:g (5.7) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    584189 8urh:h (5.7) BS01 rna ? GO:0000027 ... P60422 39117885
    584190 8urh:j (5.7) BS01 rna ? GO:0000027 ... P60438 39117885
    584191 8urh:l (5.7) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    584192 8urh:m (5.7) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    584193 8urh:o (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    584194 8urh:p (5.7) BS01 rna ? GO:0002181 ... C3SR17 39117885
    584195 8urh:q (5.7) BS01 rna ? GO:0005737 ... A0A0E2L017 39117885
    584196 8urh:t (5.7) BS01 rna ? GO:0003735 ... S1NW45 39117885
    584197 8urh:t (5.7) BS02 rna ? GO:0003735 ... S1NW45 39117885
    584198 8urh:u (5.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    584199 8urh:v (5.7) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    584200 8urh:v (5.7) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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