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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    583401 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583402 8uk3:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583403 8uk3:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583404 8uk3:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583405 8uk3:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    583406 8uk3:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    583407 8uk3:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    583408 8uk6:A (2.73) BS01 ZN 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    583409 8uk6:A (2.73) BS02 WVK 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    583410 8uk9:B (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583411 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583412 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583413 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583414 8uk9:C (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583415 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583416 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583417 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583418 8uk9:D (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583419 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583420 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583421 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583422 8uk9:E (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583423 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583424 8uk9:K (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583425 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583426 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583427 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583428 8uk9:L (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583429 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583430 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583431 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583432 8uk9:M (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583433 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    583434 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0003677 ... P04526 38177685
    583435 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583436 8uk9:N (3.1) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    583437 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    583438 8ukq:A (3.5) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583439 8ukq:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583440 8ukq:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583441 8ukq:A (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583442 8ukq:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    583443 8ukq:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    583444 8ukq:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    583445 8ukq:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    583446 8ukq:C (3.5) BS01 ZN ? GO:0000428 ... P16370 38393762
    583447 8ukq:I (3.5) BS01 ZN ? GO:0000428 ... P27999 38393762
    583448 8ukq:I (3.5) BS02 ZN ? GO:0000428 ... P27999 38393762
    583449 8ukq:J (3.5) BS01 ZN ? GO:0000428 ... P22139 38393762
    583450 8ukq:L (3.5) BS01 ZN ? GO:0000428 ... P40422 38393762
    583451 8ukr:A (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    583452 8ukr:A (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583453 8ukr:A (3.78) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583454 8ukr:A (3.78) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583455 8ukr:A (3.78) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583456 8ukr:A (3.78) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    583457 8ukr:B (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    583458 8ukr:B (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    583459 8ukr:B (3.78) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    583460 8ukr:B (3.78) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 38393762
    583461 8ukr:C (3.78) BS01 ZN ? GO:0000428 ... P16370 38393762
    583462 8ukr:I (3.78) BS01 ZN ? GO:0000428 ... P27999 38393762
    583463 8ukr:I (3.78) BS02 ZN ? GO:0000428 ... P27999 38393762
    583464 8ukr:J (3.78) BS01 ZN ? GO:0000428 ... P22139 38393762
    583465 8ukr:L (3.78) BS01 ZN ? GO:0000428 ... P40422 38393762
    583466 8uks:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    583467 8uks:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583468 8uks:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583469 8uks:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583470 8uks:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583471 8uks:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    583472 8uks:A (3.4) BS07 CTP 2.7.7.6 GO:0000428 ... P04050 38393762
    583473 8uks:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    583474 8uks:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    583475 8uks:B (3.4) BS03 CTP 2.7.7.6 GO:0000428 ... P08518 38393762
    583476 8uks:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    583477 8uks:C (3.4) BS01 ZN ? GO:0000428 ... P16370 38393762
    583478 8uks:I (3.4) BS01 ZN ? GO:0000428 ... P27999 38393762
    583479 8uks:I (3.4) BS02 ZN ? GO:0000428 ... P27999 38393762
    583480 8uks:J (3.4) BS01 ZN ? GO:0000428 ... P22139 38393762
    583481 8uks:L (3.4) BS01 ZN ? GO:0000428 ... P40422 38393762
    583482 8ukt:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    583483 8ukt:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583484 8ukt:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583485 8ukt:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    583486 8ukt:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583487 8ukt:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583488 8ukt:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    583489 8ukt:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    583490 8ukt:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    583491 8ukt:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    583492 8ukt:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    583493 8ukt:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    583494 8ukt:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    583495 8ukt:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    583496 8uku:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    583497 8uku:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583498 8uku:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    583499 8uku:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583500 8uku:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    583501 8uku:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    583502 8uku:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    583503 8uku:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    583504 8uku:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    583505 8uku:B (3.6) BS04 POP 2.7.7.6 GO:0000428 ... P08518 38393762
    583506 8uku:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    583507 8uku:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    583508 8uku:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    583509 8uku:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    583510 8uku:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    583511 8ulg:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    583512 8ulg:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    583513 8ulg:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    583514 8ulg:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    583515 8umt:B (3.33) BS01 AGS ? GO:0003677 ... P35250 38669181
    583516 8umt:C (3.33) BS01 MG ? GO:0003677 ... P40937 38669181
    583517 8umt:C (3.33) BS02 AGS ? GO:0003677 ... P40937 38669181
    583518 8umt:D (3.33) BS01 AGS ? GO:0003677 ... P35249 38669181
    583519 8umt:E (3.33) BS01 ADP ? GO:0000731 ... P40938 38669181
    583520 8umu:A (3.16) BS01 AGS ? GO:0003677 ... Q8WVB6 38669181
    583521 8umu:B (3.16) BS01 AGS ? GO:0003677 ... P35250 38669181
    583522 8umu:B (3.16) BS02 AGS ? GO:0003677 ... P35250 38669181
    583523 8umu:C (3.16) BS01 AGS ? GO:0003677 ... P40937 38669181
    583524 8umu:E (3.16) BS01 ADP ? GO:0000731 ... P40938 38669181
    583525 8umv:A (2.75) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    583526 8umv:A (2.75) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    583527 8umv:A (2.75) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    583528 8umv:B (2.75) BS01 dna ? GO:0003677 ... P35250 38669181
    583529 8umv:B (2.75) BS02 AGS ? GO:0003677 ... P35250 38669181
    583530 8umv:B (2.75) BS03 AGS ? GO:0003677 ... P35250 38669181
    583531 8umv:C (2.75) BS01 dna ? GO:0003677 ... P40937 38669181
    583532 8umv:C (2.75) BS02 AGS ? GO:0003677 ... P40937 38669181
    583533 8umv:C (2.75) BS03 AGS ? GO:0003677 ... P40937 38669181
    583534 8umv:D (2.75) BS01 dna ? GO:0003677 ... P35249 38669181
    583535 8umv:D (2.75) BS02 AGS ? GO:0003677 ... P35249 38669181
    583536 8umv:D (2.75) BS03 AGS ? GO:0003677 ... P35249 38669181
    583537 8umv:E (2.75) BS01 dna ? GO:0000731 ... P40938 38669181
    583538 8umv:E (2.75) BS02 AGS ? GO:0000731 ... P40938 38669181
    583539 8umv:E (2.75) BS03 ADP ? GO:0000731 ... P40938 38669181
    583540 8umw:A (2.93) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    583541 8umw:A (2.93) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    583542 8umw:A (2.93) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    583543 8umw:B (2.93) BS01 AGS ? GO:0003677 ... P35250 38669181
    583544 8umw:B (2.93) BS02 AGS ? GO:0003677 ... P35250 38669181
    583545 8umw:C (2.93) BS01 dna ? GO:0003677 ... P40937 38669181
    583546 8umw:C (2.93) BS02 AGS ? GO:0003677 ... P40937 38669181
    583547 8umw:C (2.93) BS03 AGS ? GO:0003677 ... P40937 38669181
    583548 8umw:D (2.93) BS01 dna ? GO:0003677 ... P35249 38669181
    583549 8umw:D (2.93) BS02 AGS ? GO:0003677 ... P35249 38669181
    583550 8umw:D (2.93) BS03 MG ? GO:0003677 ... P35249 38669181
    583551 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    583552 8umw:E (2.93) BS01 dna ? GO:0000731 ... P40938 38669181
    583553 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    583554 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    583555 8umy:A (2.83) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    583556 8umy:A (2.83) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    583557 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    583558 8umy:B (2.83) BS01 dna ? GO:0003677 ... P35250 38669181
    583559 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    583560 8umy:B (2.83) BS03 MG ? GO:0003677 ... P35250 38669181
    583561 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    583562 8umy:C (2.83) BS01 dna ? GO:0003677 ... P40937 38669181
    583563 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    583564 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    583565 8umy:D (2.83) BS01 dna ? GO:0003677 ... P35249 38669181
    583566 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    583567 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    583568 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    583569 8umy:E (2.83) BS01 dna ? GO:0000731 ... P40938 38669181
    583570 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    583571 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    583572 8un0:A (3.0) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    583573 8un0:A (3.0) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    583574 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    583575 8un0:B (3.0) BS01 dna ? GO:0003677 ... P35250 38669181
    583576 8un0:B (3.0) BS02 dna ? GO:0003677 ... P35250 38669181
    583577 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    583578 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    583579 8un0:C (3.0) BS01 dna ? GO:0003677 ... P40937 38669181
    583580 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    583581 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    583582 8un0:D (3.0) BS01 dna ? GO:0003677 ... P35249 38669181
    583583 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    583584 8un0:D (3.0) BS03 MG ? GO:0003677 ... P35249 38669181
    583585 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    583586 8un0:E (3.0) BS01 dna ? GO:0000731 ... P40938 38669181
    583587 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    583588 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    583589 8un3:A (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    583590 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    583591 8un3:B (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    583592 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    583593 8un3:B (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    583594 8un3:B (2.07) BS04 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    583595 8un3:C (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    583596 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    583597 8un3:D (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    583598 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    583599 8un3:D (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    583600 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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