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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    582601 8ues:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582602 8ues:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582603 8ues:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582604 8ues:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582605 8ues:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582606 8ues:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582607 8ues:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582608 8ues:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582609 8uet:1E (3.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582610 8uet:1F (3.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582611 8uet:1F (3.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582612 8uet:1G (3.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582613 8uet:1G (3.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582614 8uet:1G (3.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582615 8uet:1I (3.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582616 8uet:1I (3.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582617 8uet:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582618 8uet:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582619 8uet:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582620 8uet:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582621 8uet:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582622 8ueu:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582623 8ueu:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582624 8ueu:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582625 8ueu:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582626 8ueu:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582627 8ueu:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582628 8ueu:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582629 8ueu:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582630 8ueu:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582631 8ueu:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582632 8ueu:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582633 8ueu:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582634 8ueu:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582635 8ueu:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582636 8uev:1E (3.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582637 8uev:1F (3.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582638 8uev:1F (3.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582639 8uev:1G (3.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582640 8uev:1G (3.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582641 8uev:1G (3.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582642 8uev:1I (3.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582643 8uev:1I (3.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582644 8uev:1O (3.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582645 8uev:1P (3.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582646 8uev:1R (3.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582647 8uev:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582648 8uev:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582649 8uew:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582650 8uew:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582651 8uew:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582652 8uew:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582653 8uew:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582654 8uew:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582655 8uew:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582656 8uew:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582657 8uew:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582658 8uew:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582659 8uew:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582660 8uew:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582661 8uew:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582662 8uew:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582663 8uex:1E (3.9) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582664 8uex:1F (3.9) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582665 8uex:1F (3.9) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582666 8uex:1G (3.9) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582667 8uex:1G (3.9) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582668 8uex:1G (3.9) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582669 8uex:1I (3.9) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582670 8uex:1I (3.9) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582671 8uex:1O (3.9) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582672 8uex:1O (3.9) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    582673 8uex:1P (3.9) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582674 8uex:1R (3.9) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582675 8uex:1T (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582676 8uex:1U (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582677 8uex:1W (3.9) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582678 8uey:1E (3.6) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582679 8uey:1F (3.6) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582680 8uey:1F (3.6) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582681 8uey:1G (3.6) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582682 8uey:1G (3.6) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582683 8uey:1G (3.6) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582684 8uey:1I (3.6) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582685 8uey:1I (3.6) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582686 8uey:1O (3.6) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582687 8uey:1P (3.6) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582688 8uey:1R (3.6) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582689 8uey:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582690 8uey:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582691 8uey:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582692 8uez:1E (3.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582693 8uez:1F (3.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582694 8uez:1F (3.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582695 8uez:1G (3.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582696 8uez:1G (3.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582697 8uez:1G (3.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582698 8uez:1H (3.5) BS01 U10 N/A GO:0003954 ... A0A0U1RS44 38811722
    582699 8uez:1I (3.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582700 8uez:1I (3.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582701 8uez:1O (3.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582702 8uez:1P (3.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582703 8uez:1R (3.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582704 8uez:1T (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582705 8uez:1U (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582706 8uez:1W (3.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582707 8ufg:F (3.1) BS01 WJR ? GO:0005886 ... Q6FFD7 38172635
    582708 8ufg:G (3.1) BS01 WJR ? GO:0005886 ... Q6FFD6 38172635
    582709 8ufh:F (3.2) BS01 WJW ? GO:0005886 ... Q6FFD7 38172635
    582710 8ufh:F (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD7 38172635
    582711 8ufh:G (3.2) BS01 WJW ? GO:0005886 ... Q6FFD6 38172635
    582712 8ufh:G (3.2) BS02 Y75 ? GO:0005886 ... Q6FFD6 38172635
    582713 8ufi:A (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    582714 8ufi:A (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    582715 8ufi:B (3.1) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    582716 8ufi:B (3.1) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    582717 8ufj:A (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582718 8ufj:A (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582719 8ufj:B (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582720 8ufj:B (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582721 8ufj:C (2.45) BS01 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582722 8ufj:C (2.45) BS02 MG 6.3.1.2 GO:0003824 ... Q8PY99 37968329
    582723 8ug1:A (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    582724 8ug1:B (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    582725 8ug3:A (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    582726 8ug3:B (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    582727 8ugb:A (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P11541 38159849
    582728 8ugb:A (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    582729 8ugb:A (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    582730 8ugb:A (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P11541 38159849
    582731 8ugb:B (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P23439 38159849
    582732 8ugb:B (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    582733 8ugb:B (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    582734 8ugb:B (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P23439 38159849
    582735 8ugd:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582736 8ugd:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582737 8ugd:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582738 8ugd:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582739 8ugd:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    582740 8ugd:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582741 8ugd:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582742 8ugd:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582743 8ugd:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582744 8ugd:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582745 8ugd:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    582746 8ugd:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582747 8uge:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582748 8uge:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582749 8uge:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582750 8uge:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582751 8uge:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582752 8uge:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582753 8uge:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582754 8uge:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582755 8uge:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582756 8uge:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582757 8uge:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582758 8uge:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582759 8ugf:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582760 8ugf:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582761 8ugf:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582762 8ugf:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582763 8ugf:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582764 8ugf:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582765 8ugf:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582766 8ugf:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582767 8ugf:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582768 8ugf:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582769 8ugf:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582770 8ugf:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582771 8ugg:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582772 8ugg:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582773 8ugg:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582774 8ugg:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582775 8ugg:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582776 8ugg:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582777 8ugg:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582778 8ugg:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582779 8ugg:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582780 8ugg:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    582781 8ugg:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    582782 8ugg:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    582783 8ugh:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    582784 8ugh:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    582785 8ugh:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    582786 8ugh:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582787 8ugh:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    582788 8ugh:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    582789 8ugh:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582790 8ugh:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    582791 8ugh:1I (2.1) BS03 AYA N/A GO:0003954 ... A0A286ZUN9 38811722
    582792 8ugh:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    582793 8ugh:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    582794 8ugh:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    582795 8ugh:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    582796 8ugh:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    582797 8ugh:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    582798 8ugh:1q (2.1) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    582799 8ugh:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    582800 8ugh:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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