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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    582201 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    582202 8ud8:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    582203 8ud8:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    582204 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    582205 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    582206 8ud8:1T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    582207 8ud8:1T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    582208 8ud8:1U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    582209 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    582210 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    582211 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    582212 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    582213 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    582214 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    582215 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    582216 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    582217 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    582218 8ud8:1V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    582219 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    582220 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    582221 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    582222 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    582223 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    582224 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    582225 8ud8:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    582226 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    582227 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    582228 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    582229 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    582230 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    582231 8ud8:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    582232 8ud8:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    582233 8ud8:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    582234 8ud8:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    582235 8ud8:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    582236 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    582237 8ud8:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    582238 8ud8:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    582239 8ud8:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    582240 8ud8:1b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    582241 8ud8:1c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    582242 8ud8:1d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    582243 8ud8:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 38359125
    582244 8ud8:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    582245 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    582246 8ud8:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    582247 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    582248 8ud8:1g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    582249 8ud8:1g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    582250 8ud8:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    582251 8ud8:1i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    582252 8ud8:1i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    582253 8ud8:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    582254 8ud8:1k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    582255 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    582256 8ud8:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    582257 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    582258 8ud8:1m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    582259 8ud8:1m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    582260 8ud8:1m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    582261 8ud8:1m (2.6) BS04 MG ? GO:0000049 ... P80377 38359125
    582262 8ud8:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    582263 8ud8:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    582264 8ud8:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    582265 8ud8:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    582266 8ud8:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    582267 8ud8:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    582268 8ud8:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    582269 8ud8:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    582270 8ud8:1t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    582271 8ud8:20 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    582272 8ud8:20 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    582273 8ud8:20 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    582274 8ud8:21 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    582275 8ud8:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    582276 8ud8:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    582277 8ud8:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    582278 8ud8:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    582279 8ud8:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    582280 8ud8:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    582281 8ud8:25 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    582282 8ud8:25 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    582283 8ud8:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 38359125
    582284 8ud8:26 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    582285 8ud8:26 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    582286 8ud8:26 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    582287 8ud8:27 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    582288 8ud8:27 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    582289 8ud8:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    582290 8ud8:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    582291 8ud8:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    582292 8ud8:2D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    582293 8ud8:2D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    582294 8ud8:2D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    582295 8ud8:2D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    582296 8ud8:2D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    582297 8ud8:2D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    582298 8ud8:2D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    582299 8ud8:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    582300 8ud8:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    582301 8ud8:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    582302 8ud8:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    582303 8ud8:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    582304 8ud8:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    582305 8ud8:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    582306 8ud8:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    582307 8ud8:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    582308 8ud8:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    582309 8ud8:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    582310 8ud8:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    582311 8ud8:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    582312 8ud8:2N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    582313 8ud8:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    582314 8ud8:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    582315 8ud8:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    582316 8ud8:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    582317 8ud8:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    582318 8ud8:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    582319 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    582320 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    582321 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    582322 8ud8:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    582323 8ud8:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    582324 8ud8:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    582325 8ud8:2T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    582326 8ud8:2T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    582327 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    582328 8ud8:2U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    582329 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    582330 8ud8:2V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    582331 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    582332 8ud8:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    582333 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    582334 8ud8:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    582335 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    582336 8ud8:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    582337 8ud8:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    582338 8ud8:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    582339 8ud8:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    582340 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    582341 8ud8:2b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    582342 8ud8:2c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    582343 8ud8:2d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    582344 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    582345 8ud8:2d (2.6) BS03 SF4 ? GO:0003723 ... P80373 38359125
    582346 8ud8:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    582347 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    582348 8ud8:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    582349 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    582350 8ud8:2g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    582351 8ud8:2g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    582352 8ud8:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    582353 8ud8:2i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    582354 8ud8:2i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    582355 8ud8:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    582356 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    582357 8ud8:2k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    582358 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    582359 8ud8:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    582360 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    582361 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    582362 8ud8:2m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    582363 8ud8:2m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    582364 8ud8:2m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    582365 8ud8:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    582366 8ud8:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    582367 8ud8:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    582368 8ud8:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    582369 8ud8:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    582370 8ud8:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    582371 8ud8:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    582372 8ud8:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    582373 8ud8:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    582374 8ud8:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    582375 8ud8:2t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    582376 8ud8:2t (2.6) BS02 MG ? GO:0003723 ... P80380 38359125
    582377 8ud9:L (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    582378 8ud9:M (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    582379 8ud9:Z (2.04) BS01 YRE 3.4.25.1 GO:0004298 ... P28074 38097652
    582380 8ud9:a (2.04) BS01 YRE 3.4.25.1 GO:0005839 ... P20618 38097652
    582381 8udk:A (3.43) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    582382 8udk:A (3.43) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    582383 8udk:A (3.43) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    582384 8udk:B (3.43) BS01 dna 2.7.7.7 GO:0001701 ... Q9UHN1 38787958
    582385 8udl:A (2.37) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    582386 8udl:A (2.37) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    582387 8uee:F (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582388 8uee:F (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582389 8uee:H (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582390 8uee:H (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582391 8uee:I (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582392 8uee:J (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582393 8uee:J (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582394 8uee:K (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582395 8uee:K (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582396 8uee:L (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582397 8uee:L (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582398 8uee:M (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38518780
    582399 8uee:M (3.2) BS02 PO4 3.6.4.- GO:0000287 ... P68135 38518780
    582400 8uej:AA (2.7) BS01 CA ? GO:0019028 ... D7RIC2 38701202
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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