Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 2901 2902 2903 2904 2905 2906 2907 2908 2909 2910 2911 2912 2913 2914 2915 2916 2917 2918 2919 2920 2921 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    582001 8ud7:1n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    582002 8ud7:1o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    582003 8ud7:1o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    582004 8ud7:1p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    582005 8ud7:1q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    582006 8ud7:1r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    582007 8ud7:1s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    582008 8ud7:1t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    582009 8ud7:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    582010 8ud7:20 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    582011 8ud7:20 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    582012 8ud7:20 (2.55) BS03 rna ? GO:0003735 ... P60493 38359125
    582013 8ud7:21 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    582014 8ud7:22 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    582015 8ud7:23 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    582016 8ud7:23 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    582017 8ud7:24 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    582018 8ud7:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    582019 8ud7:25 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    582020 8ud7:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    582021 8ud7:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 38359125
    582022 8ud7:26 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    582023 8ud7:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 38359125
    582024 8ud7:27 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    582025 8ud7:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    582026 8ud7:27 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    582027 8ud7:28 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    582028 8ud7:29 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    582029 8ud7:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    582030 8ud7:2D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    582031 8ud7:2D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    582032 8ud7:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    582033 8ud7:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    582034 8ud7:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    582035 8ud7:2D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    582036 8ud7:2D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    582037 8ud7:2E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    582038 8ud7:2F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    582039 8ud7:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    582040 8ud7:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    582041 8ud7:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    582042 8ud7:2G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    582043 8ud7:2G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    582044 8ud7:2G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    582045 8ud7:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    582046 8ud7:2H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    582047 8ud7:2I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    582048 8ud7:2N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    582049 8ud7:2O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    582050 8ud7:2O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    582051 8ud7:2P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    582052 8ud7:2Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    582053 8ud7:2Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    582054 8ud7:2Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    582055 8ud7:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    582056 8ud7:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    582057 8ud7:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    582058 8ud7:2R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    582059 8ud7:2S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    582060 8ud7:2S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    582061 8ud7:2T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    582062 8ud7:2T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    582063 8ud7:2U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    582064 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    582065 8ud7:2V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    582066 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    582067 8ud7:2W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    582068 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    582069 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    582070 8ud7:2X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    582071 8ud7:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    582072 8ud7:2Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    582073 8ud7:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    582074 8ud7:2Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    582075 8ud7:2Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    582076 8ud7:2b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    582077 8ud7:2c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    582078 8ud7:2d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    582079 8ud7:2d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    582080 8ud7:2e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    582081 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    582082 8ud7:2f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    582083 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    582084 8ud7:2g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    582085 8ud7:2g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    582086 8ud7:2h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    582087 8ud7:2i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    582088 8ud7:2i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    582089 8ud7:2j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    582090 8ud7:2k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    582091 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    582092 8ud7:2l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    582093 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    582094 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    582095 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    582096 8ud7:2m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    582097 8ud7:2m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    582098 8ud7:2m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    582099 8ud7:2n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    582100 8ud7:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    582101 8ud7:2o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    582102 8ud7:2o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    582103 8ud7:2p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    582104 8ud7:2q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    582105 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    582106 8ud7:2r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    582107 8ud7:2s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    582108 8ud7:2t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    582109 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    582110 8ud8:10 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    582111 8ud8:10 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    582112 8ud8:10 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    582113 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    582114 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    582115 8ud8:11 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    582116 8ud8:11 (2.6) BS02 rna ? GO:0003735 ... P60494 38359125
    582117 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    582118 8ud8:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    582119 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    582120 8ud8:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    582121 8ud8:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    582122 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    582123 8ud8:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    582124 8ud8:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    582125 8ud8:15 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    582126 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    582127 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    582128 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    582129 8ud8:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 38359125
    582130 8ud8:16 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    582131 8ud8:16 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    582132 8ud8:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    582133 8ud8:17 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    582134 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    582135 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    582136 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    582137 8ud8:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    582138 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    582139 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    582140 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    582141 8ud8:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    582142 8ud8:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    582143 8ud8:1D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    582144 8ud8:1D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    582145 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    582146 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    582147 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    582148 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    582149 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    582150 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    582151 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    582152 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    582153 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    582154 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    582155 8ud8:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    582156 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    582157 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    582158 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    582159 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    582160 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    582161 8ud8:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    582162 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    582163 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    582164 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    582165 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    582166 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    582167 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    582168 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    582169 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    582170 8ud8:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    582171 8ud8:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    582172 8ud8:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    582173 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    582174 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    582175 8ud8:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    582176 8ud8:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    582177 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    582178 8ud8:1N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    582179 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    582180 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    582181 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    582182 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    582183 8ud8:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    582184 8ud8:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    582185 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    582186 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    582187 8ud8:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    582188 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    582189 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    582190 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    582191 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    582192 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    582193 8ud8:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    582194 8ud8:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    582195 8ud8:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    582196 8ud8:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    582197 8ud8:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    582198 8ud8:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    582199 8ud8:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    582200 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218