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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    581601 8ud6:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38359125
    581602 8ud6:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38359125
    581603 8ud6:11 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    581604 8ud6:11 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    581605 8ud6:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    581606 8ud6:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    581607 8ud6:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    581608 8ud6:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    581609 8ud6:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    581610 8ud6:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38359125
    581611 8ud6:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    581612 8ud6:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    581613 8ud6:15 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    581614 8ud6:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38359125
    581615 8ud6:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38359125
    581616 8ud6:16 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    581617 8ud6:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38359125
    581618 8ud6:16 (2.7) BS03 ZN ? GO:0000049 ... P35871 38359125
    581619 8ud6:17 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    581620 8ud6:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    581621 8ud6:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38359125
    581622 8ud6:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    581623 8ud6:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    581624 8ud6:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    581625 8ud6:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    581626 8ud6:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    581627 8ud6:1D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    581628 8ud6:1D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    581629 8ud6:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    581630 8ud6:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    581631 8ud6:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    581632 8ud6:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    581633 8ud6:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38359125
    581634 8ud6:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38359125
    581635 8ud6:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38359125
    581636 8ud6:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38359125
    581637 8ud6:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38359125
    581638 8ud6:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38359125
    581639 8ud6:1D (2.7) BS13 MG ? GO:0002181 ... P60405 38359125
    581640 8ud6:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    581641 8ud6:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    581642 8ud6:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    581643 8ud6:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    581644 8ud6:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    581645 8ud6:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    581646 8ud6:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    581647 8ud6:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    581648 8ud6:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    581649 8ud6:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    581650 8ud6:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    581651 8ud6:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    581652 8ud6:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    581653 8ud6:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    581654 8ud6:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    581655 8ud6:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    581656 8ud6:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 38359125
    581657 8ud6:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    581658 8ud6:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    581659 8ud6:1N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    581660 8ud6:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38359125
    581661 8ud6:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    581662 8ud6:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    581663 8ud6:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    581664 8ud6:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    581665 8ud6:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    581666 8ud6:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    581667 8ud6:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    581668 8ud6:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    581669 8ud6:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    581670 8ud6:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    581671 8ud6:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    581672 8ud6:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    581673 8ud6:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 38359125
    581674 8ud6:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    581675 8ud6:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    581676 8ud6:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38359125
    581677 8ud6:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38359125
    581678 8ud6:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    581679 8ud6:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    581680 8ud6:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    581681 8ud6:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    581682 8ud6:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    581683 8ud6:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    581684 8ud6:1T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    581685 8ud6:1T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    581686 8ud6:1T (2.7) BS03 MG ? GO:0003735 ... P60490 38359125
    581687 8ud6:1U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    581688 8ud6:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    581689 8ud6:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38359125
    581690 8ud6:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38359125
    581691 8ud6:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38359125
    581692 8ud6:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38359125
    581693 8ud6:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38359125
    581694 8ud6:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38359125
    581695 8ud6:1U (2.7) BS09 MG ? GO:0000027 ... P60491 38359125
    581696 8ud6:1U (2.7) BS10 MG ? GO:0000027 ... P60491 38359125
    581697 8ud6:1V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    581698 8ud6:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    581699 8ud6:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38359125
    581700 8ud6:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38359125
    581701 8ud6:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38359125
    581702 8ud6:1V (2.7) BS06 MG ? GO:0003723 ... P60492 38359125
    581703 8ud6:1V (2.7) BS07 MG ? GO:0003723 ... P60492 38359125
    581704 8ud6:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    581705 8ud6:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    581706 8ud6:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    581707 8ud6:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    581708 8ud6:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    581709 8ud6:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    581710 8ud6:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    581711 8ud6:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    581712 8ud6:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    581713 8ud6:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    581714 8ud6:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    581715 8ud6:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    581716 8ud6:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    581717 8ud6:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    581718 8ud6:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    581719 8ud6:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    581720 8ud6:1b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    581721 8ud6:1c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    581722 8ud6:1d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    581723 8ud6:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 38359125
    581724 8ud6:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    581725 8ud6:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    581726 8ud6:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38359125
    581727 8ud6:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    581728 8ud6:1g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    581729 8ud6:1g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    581730 8ud6:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    581731 8ud6:1i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    581732 8ud6:1i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    581733 8ud6:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    581734 8ud6:1k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    581735 8ud6:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    581736 8ud6:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    581737 8ud6:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    581738 8ud6:1m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    581739 8ud6:1m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    581740 8ud6:1m (2.7) BS03 rna ? GO:0000049 ... P80377 38359125
    581741 8ud6:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38359125
    581742 8ud6:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    581743 8ud6:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    581744 8ud6:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    581745 8ud6:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    581746 8ud6:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    581747 8ud6:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    581748 8ud6:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    581749 8ud6:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    581750 8ud6:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    581751 8ud6:1t (2.7) BS02 MG ? GO:0003723 ... P80380 38359125
    581752 8ud6:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    581753 8ud6:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    581754 8ud6:20 (2.7) BS03 rna ? GO:0003735 ... P60493 38359125
    581755 8ud6:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    581756 8ud6:21 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    581757 8ud6:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    581758 8ud6:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    581759 8ud6:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    581760 8ud6:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    581761 8ud6:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    581762 8ud6:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    581763 8ud6:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    581764 8ud6:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 38359125
    581765 8ud6:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    581766 8ud6:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 38359125
    581767 8ud6:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    581768 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    581769 8ud6:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    581770 8ud6:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    581771 8ud6:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    581772 8ud6:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    581773 8ud6:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    581774 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    581775 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    581776 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    581777 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    581778 8ud6:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    581779 8ud6:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    581780 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    581781 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    581782 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    581783 8ud6:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    581784 8ud6:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    581785 8ud6:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    581786 8ud6:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    581787 8ud6:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    581788 8ud6:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    581789 8ud6:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    581790 8ud6:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    581791 8ud6:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    581792 8ud6:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    581793 8ud6:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    581794 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    581795 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    581796 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    581797 8ud6:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    581798 8ud6:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    581799 8ud6:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    581800 8ud6:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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