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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580801 8tvq:C (4.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    580802 8tvq:I (4.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    580803 8tvq:J (4.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    580804 8tvq:L (4.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    580805 8tvs:A (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580806 8tvs:A (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580807 8tvs:A (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    580808 8tvs:A (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580809 8tvs:A (4.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580810 8tvs:A (4.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    580811 8tvs:B (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580812 8tvs:B (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580813 8tvs:B (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    580814 8tvs:B (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    580815 8tvs:C (4.4) BS01 ZN ? GO:0000428 ... P16370 38194460
    580816 8tvs:I (4.4) BS01 ZN ? GO:0000428 ... P27999 38194460
    580817 8tvs:I (4.4) BS02 ZN ? GO:0000428 ... P27999 38194460
    580818 8tvs:J (4.4) BS01 ZN ? GO:0000428 ... P22139 38194460
    580819 8tvs:L (4.4) BS01 ZN ? GO:0000428 ... P40422 38194460
    580820 8tvv:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580821 8tvv:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    580822 8tvv:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580823 8tvv:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580824 8tvv:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    580825 8tvv:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580826 8tvv:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    580827 8tvv:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    580828 8tvv:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    580829 8tvv:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    580830 8tvv:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    580831 8tvv:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    580832 8tvv:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    580833 8tvw:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580834 8tvw:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    580835 8tvw:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580836 8tvw:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580837 8tvw:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    580838 8tvw:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580839 8tvw:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    580840 8tvw:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    580841 8tvw:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    580842 8tvw:E (3.6) BS01 dna ? GO:0000428 ... P20434 38194460
    580843 8tvw:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    580844 8tvw:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38194460
    580845 8tvw:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    580846 8tvw:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    580847 8tvx:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580848 8tvx:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    580849 8tvx:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580850 8tvx:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580851 8tvx:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    580852 8tvx:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580853 8tvx:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    580854 8tvx:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    580855 8tvx:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    580856 8tvx:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    580857 8tvx:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    580858 8tvx:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    580859 8tvx:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    580860 8tvy:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    580861 8tvy:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    580862 8tvy:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    580863 8tvy:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    580864 8tvy:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580865 8tvy:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    580866 8tvy:B (3.1) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    580867 8tvy:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    580868 8tvy:C (3.1) BS01 ZN ? GO:0000428 ... P16370 38194460
    580869 8tvy:E (3.1) BS01 dna ? GO:0000428 ... P20434 38194460
    580870 8tvy:I (3.1) BS01 ZN ? GO:0000428 ... P27999 38194460
    580871 8tvy:I (3.1) BS02 ZN ? GO:0000428 ... P27999 38194460
    580872 8tvy:M (3.1) BS01 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    580873 8tvy:M (3.1) BS02 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    580874 8twe:A (2.55) BS01 peptide ? GO:0000159 ... P30153 38123684
    580875 8twe:B (2.55) BS01 peptide ? GO:0000159 ... P63151 38123684
    580876 8twe:B (2.55) BS02 peptide ? GO:0000159 ... P63151 38123684
    580877 8twi:C (2.69) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 38123684
    580878 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    580879 8twi:C (2.69) BS03 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    580880 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    580881 8two:A (2.09) BS01 peptide ? GO:0005576 ... P13835 38354245
    580882 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    580883 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    580884 8tws:A (2.85) BS01 peptide ? GO:0005576 ... P13835 38354245
    580885 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    580886 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580887 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580888 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580889 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580890 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580891 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580892 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580893 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580894 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580895 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    580896 8tx5:A (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    580897 8tx5:B (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    580898 8tx5:C (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    580899 8tx5:D (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    580900 8tx6:A (1.56) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    580901 8tx6:A (1.56) BS02 CA N/A GO:0005576 ... P0CS93 N/A
    580902 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    580903 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    580904 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    580905 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    580906 8txf:A (1.29) BS01 peptide ? GO:0005576 ... P13835 38354245
    580907 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    580908 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    580909 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    580910 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    580911 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    580912 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    580913 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    580914 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    580915 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    580916 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    580917 8txo:I (3.1) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    580918 8txo:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    580919 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    580920 8txo:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580921 8txo:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580922 8txo:J (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580923 8txo:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580924 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580925 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    580926 8txv:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    580927 8txv:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    580928 8txv:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    580929 8txv:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    580930 8txv:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    580931 8txv:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    580932 8txv:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    580933 8txv:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    580934 8txv:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    580935 8txv:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    580936 8txv:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    580937 8txv:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    580938 8txv:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    580939 8txv:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    580940 8txv:G (3.8) BS03 peptide ? GO:0000786 ... P04908 38242129
    580941 8txv:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    580942 8txv:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    580943 8txv:H (3.8) BS03 peptide ? GO:0000786 ... P62807 38242129
    580944 8txw:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    580945 8txw:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    580946 8txw:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    580947 8txw:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    580948 8txw:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    580949 8txw:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    580950 8txw:D (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    580951 8txw:D (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    580952 8txw:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    580953 8txw:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    580954 8txw:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    580955 8txw:F (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    580956 8txw:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    580957 8txw:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    580958 8txw:G (3.6) BS03 peptide ? GO:0000786 ... P04908 38242129
    580959 8txw:H (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    580960 8txw:H (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    580961 8txw:H (3.6) BS03 peptide ? GO:0000786 ... P62807 38242129
    580962 8txx:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    580963 8txx:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    580964 8txx:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    580965 8txx:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    580966 8txx:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    580967 8txx:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    580968 8txx:D (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    580969 8txx:D (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    580970 8txx:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    580971 8txx:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    580972 8txx:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    580973 8txx:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    580974 8txx:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    580975 8txx:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    580976 8txx:H (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    580977 8txx:H (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    580978 8txx:K (3.7) BS01 dna 2.3.2.27 GO:0000151 ... Q8IYW5 38242129
    580979 8tyq:A (2.99) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    580980 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    580981 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    580982 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    580983 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    580984 8tz1:A (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    580985 8tz1:A (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    580986 8tz1:A (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    580987 8tz1:A (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    580988 8tz1:A (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    580989 8tz1:B (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    580990 8tz1:B (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    580991 8tz1:B (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    580992 8tz1:B (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    580993 8tz1:B (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    580994 8tz1:C (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    580995 8tz1:C (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    580996 8tz1:C (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    580997 8tz1:C (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    580998 8tz1:C (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    580999 8tz2:A (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    581000 8tz2:A (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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