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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580201 8to1:J (2.8) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    580202 8to1:J (2.8) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    580203 8to1:L (2.8) BS01 dna N/A GO:0000345 ... P00579 38951624
    580204 8to1:L (2.8) BS02 dna N/A GO:0000345 ... P00579 38951624
    580205 8to2:B (2.0) BS01 45D ? GO:0005515 ... P74102 38578996
    580206 8to6:I (2.9) BS01 dna N/A GO:0000345 ... P0A8V2 38951624
    580207 8to6:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    580208 8to6:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    580209 8to6:J (2.9) BS02 dna N/A GO:0000287 ... P0A8T7 38951624
    580210 8to6:J (2.9) BS03 MG N/A GO:0000287 ... P0A8T7 38951624
    580211 8to6:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    580212 8to6:J (2.9) BS05 ZN N/A GO:0000287 ... P0A8T7 38951624
    580213 8to6:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    580214 8to6:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    580215 8to8:I (2.9) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    580216 8to8:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    580217 8to8:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    580218 8to8:J (2.9) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    580219 8to8:J (2.9) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    580220 8to8:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    580221 8to8:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    580222 8to8:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    580223 8to8:L (2.9) BS03 4QM N/A GO:0000345 ... P00579 38951624
    580224 8toc:AB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580225 8toc:AF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580226 8toc:AG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580227 8toc:AI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580228 8toc:AN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580229 8toc:AO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580230 8toc:AQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580231 8toc:AT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580232 8toc:AU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580233 8toc:AV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580234 8toc:AZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580235 8toc:BF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580236 8toc:BK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580237 8toc:BO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580238 8toc:BP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580239 8toc:BS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580240 8toc:BX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580241 8toc:BZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580242 8toc:Bc (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580243 8toc:CA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580244 8toc:CB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580245 8toc:CC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580246 8toc:CG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580247 8toc:CK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580248 8toc:CN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580249 8toc:CO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580250 8toc:CQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580251 8toc:CX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580252 8toc:DA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580253 8toc:DF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580254 8toc:DH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580255 8toc:DI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580256 8toc:DJ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580257 8toc:DN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580258 8toc:DO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580259 8toc:DS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580260 8toc:DT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580261 8toc:DW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580262 8toc:DY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580263 8toc:DZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580264 8toc:EA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580265 8toc:EB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580266 8toc:EC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580267 8toc:ED (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580268 8toc:EE (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580269 8toc:EH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580270 8toc:EI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580271 8toc:EM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580272 8toc:EQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580273 8toc:ES (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580274 8toc:EU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580275 8toc:EV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580276 8toc:EW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580277 8toc:EY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580278 8toc:Ec (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580279 8toc:FA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580280 8toc:FB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580281 8toc:FC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580282 8toc:FG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580283 8toc:FI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580284 8toc:FK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580285 8toc:FL (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580286 8toc:FM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580287 8toc:FN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580288 8toc:FX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580289 8toc:FY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580290 8toc:GA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580291 8toc:GM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580292 8toc:GP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580293 8toc:GV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580294 8toc:GX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    580295 8toc:a (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    580296 8toc:b (3.11) BS01 rna ? GO:0039666 ... Q9AZ43 38553443
    580297 8toe:I (2.9) BS01 1N7 N/A GO:0000345 ... P0A8V2 38951624
    580298 8toe:J (2.9) BS01 MG N/A GO:0000287 ... P0A8T7 38951624
    580299 8toe:J (2.9) BS02 ZN N/A GO:0000287 ... P0A8T7 38951624
    580300 8toe:J (2.9) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    580301 8toe:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    580302 8toe:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    580303 8toe:L (2.9) BS03 1N7 N/A GO:0000345 ... P00579 38951624
    580304 8tof:A (2.8) BS01 dna ? GO:0000086 ... P22579 38065958
    580305 8tof:A (2.8) BS02 dna ? GO:0000086 ... P22579 38065958
    580306 8tof:B (2.8) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38065958
    580307 8tof:B (2.8) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38065958
    580308 8tof:D (2.8) BS01 dna ? GO:0000122 ... Q12432 38065958
    580309 8tof:E (2.8) BS01 dna ? GO:0000122 ... Q12432 38065958
    580310 8tof:G (2.8) BS01 dna ? GO:0000118 ... Q04779 38065958
    580311 8tof:G (2.8) BS02 ZN ? GO:0000118 ... Q04779 38065958
    580312 8tof:G (2.8) BS03 ZN ? GO:0000118 ... Q04779 38065958
    580313 8tof:G (2.8) BS04 ZN ? GO:0000118 ... Q04779 38065958
    580314 8tof:G (2.8) BS05 ZN ? GO:0000118 ... Q04779 38065958
    580315 8tof:a (2.8) BS01 dna ? GO:0000786 ... P02302 38065958
    580316 8tof:a (2.8) BS02 dna ? GO:0000786 ... P02302 38065958
    580317 8tof:b (2.8) BS01 dna ? GO:0000786 ... P62799 38065958
    580318 8tof:b (2.8) BS02 dna ? GO:0000786 ... P62799 38065958
    580319 8tof:c (2.8) BS01 peptide ? GO:0000786 ... P06897 38065958
    580320 8tof:c (2.8) BS02 dna ? GO:0000786 ... P06897 38065958
    580321 8tof:c (2.8) BS03 dna ? GO:0000786 ... P06897 38065958
    580322 8tof:d (2.8) BS01 peptide ? GO:0000786 ... P02281 38065958
    580323 8tof:d (2.8) BS02 dna ? GO:0000786 ... P02281 38065958
    580324 8tof:d (2.8) BS03 dna ? GO:0000786 ... P02281 38065958
    580325 8tof:e (2.8) BS01 dna ? GO:0000786 ... P02302 38065958
    580326 8tof:e (2.8) BS02 dna ? GO:0000786 ... P02302 38065958
    580327 8tof:f (2.8) BS01 dna ? GO:0000786 ... P62799 38065958
    580328 8tof:f (2.8) BS02 dna ? GO:0000786 ... P62799 38065958
    580329 8tof:g (2.8) BS01 dna ? GO:0000786 ... P06897 38065958
    580330 8tof:g (2.8) BS02 dna ? GO:0000786 ... P06897 38065958
    580331 8tof:h (2.8) BS01 dna ? GO:0000786 ... P02281 38065958
    580332 8tof:h (2.8) BS02 dna ? GO:0000786 ... P02281 38065958
    580333 8toi:A (2.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    580334 8toi:A (2.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580335 8toi:A (2.64) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    580336 8toi:A (2.64) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    580337 8toi:A (2.64) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    580338 8toi:A (2.64) BS06 PGW ? GO:0005254 ... C7Z7K1 38684930
    580339 8toi:A (2.64) BS07 PGW ? GO:0005254 ... C7Z7K1 38684930
    580340 8toi:A (2.64) BS08 PGW ? GO:0005254 ... C7Z7K1 38684930
    580341 8toi:A (2.64) BS09 PGW ? GO:0005254 ... C7Z7K1 38684930
    580342 8toi:A (2.64) BS10 PGW ? GO:0005254 ... C7Z7K1 38684930
    580343 8toi:B (2.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    580344 8toi:B (2.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580345 8toi:B (2.64) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    580346 8toi:B (2.64) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    580347 8toi:B (2.64) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    580348 8toi:B (2.64) BS06 PGW ? GO:0005254 ... C7Z7K1 38684930
    580349 8toi:B (2.64) BS07 PGW ? GO:0005254 ... C7Z7K1 38684930
    580350 8toi:B (2.64) BS08 PGW ? GO:0005254 ... C7Z7K1 38684930
    580351 8toi:B (2.64) BS09 PGW ? GO:0005254 ... C7Z7K1 38684930
    580352 8toi:B (2.64) BS10 PGW ? GO:0005254 ... C7Z7K1 38684930
    580353 8tok:A (3.84) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    580354 8tok:A (3.84) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580355 8tok:B (3.84) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    580356 8tok:B (3.84) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580357 8tol:A (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    580358 8tol:A (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580359 8tol:A (2.85) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    580360 8tol:A (2.85) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    580361 8tol:A (2.85) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    580362 8tol:B (2.85) BS01 PGW ? GO:0005254 ... C7Z7K1 38684930
    580363 8tol:B (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    580364 8tol:B (2.85) BS03 CA ? GO:0005254 ... C7Z7K1 38684930
    580365 8tol:B (2.85) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    580366 8tol:B (2.85) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    580367 8tom:I (3.1) BS01 1N7 N/A GO:0000345 ... P0A8V2 38951624
    580368 8tom:I (3.1) BS02 1N7 N/A GO:0000345 ... P0A8V2 38951624
    580369 8tom:J (3.1) BS01 MG N/A GO:0000287 ... P0A8T7 38951624
    580370 8tom:J (3.1) BS02 ZN N/A GO:0000287 ... P0A8T7 38951624
    580371 8tom:J (3.1) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    580372 8tom:L (3.1) BS01 dna N/A GO:0000345 ... P00579 38951624
    580373 8tom:L (3.1) BS02 dna N/A GO:0000345 ... P00579 38951624
    580374 8tom:L (3.1) BS03 1N7 N/A GO:0000345 ... P00579 38951624
    580375 8tom:M (3.1) BS01 dna N/A GO:0000345 ... P0A7Z4 38951624
    580376 8toq:A (2.3) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580377 8toq:A (2.3) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580378 8tor:A (2.2) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580379 8tor:A (2.2) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580380 8tos:A (2.35) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580381 8tos:A (2.35) BS02 FUC 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580382 8tos:A (2.35) BS03 FUC 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580383 8tos:A (2.35) BS04 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580384 8tot:A (2.8) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580385 8tot:A (2.8) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580386 8tot:B (2.8) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580387 8tot:B (2.8) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580388 8tou:A (3.1) BS01 peptide 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580389 8tou:A (3.1) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38085789
    580390 8tow:A (2.14) BS01 OEX N/A GO:0005506 ... P16033 38879008
    580391 8tow:A (2.14) BS02 FE2 N/A GO:0005506 ... P16033 38879008
    580392 8tow:A (2.14) BS03 CLA N/A GO:0005506 ... P16033 38879008
    580393 8tow:A (2.14) BS04 CLA N/A GO:0005506 ... P16033 38879008
    580394 8tow:A (2.14) BS05 PHO N/A GO:0005506 ... P16033 38879008
    580395 8tow:A (2.14) BS06 CLA N/A GO:0005506 ... P16033 38879008
    580396 8tow:A (2.14) BS07 BCT N/A GO:0005506 ... P16033 38879008
    580397 8tow:A (2.14) BS08 CLA N/A GO:0005506 ... P16033 38879008
    580398 8tow:A (2.14) BS09 CLA N/A GO:0005506 ... P16033 38879008
    580399 8tow:A (2.14) BS10 PHO N/A GO:0005506 ... P16033 38879008
    580400 8tow:B (2.14) BS01 CLA N/A GO:0009523 ... P05429 38879008
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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