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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    580001 8tk8:C (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580002 8tk8:C (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580003 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580004 8tk8:D (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580005 8tk8:D (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580006 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580007 8tkd:A (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580008 8tkd:A (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580009 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580010 8tkd:B (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580011 8tkd:B (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580012 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580013 8tkd:C (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580014 8tkd:C (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580015 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580016 8tkd:D (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580017 8tkd:D (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580018 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580019 8tke:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580020 8tke:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580021 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580022 8tke:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580023 8tke:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580024 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580025 8tke:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580026 8tke:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580027 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580028 8tke:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580029 8tke:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580030 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580031 8tkf:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580032 8tkf:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580033 8tkf:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    580034 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580035 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    580036 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    580037 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    580038 8tkf:B (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    580039 8tkf:B (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    580040 8tkf:B (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    580041 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580042 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    580043 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    580044 8tkf:C (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    580045 8tkf:C (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    580046 8tkf:C (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    580047 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580048 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    580049 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    580050 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    580051 8tkf:D (3.2) BS03 ZN ? GO:0000822 ... Q14573 37898605
    580052 8tkf:D (3.2) BS04 I3P ? GO:0000822 ... Q14573 37898605
    580053 8tkf:D (3.2) BS05 CA ? GO:0000822 ... Q14573 37898605
    580054 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    580055 8tkg:A (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580056 8tkg:A (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580057 8tkg:A (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    580058 8tkg:A (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    580059 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580060 8tkg:B (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580061 8tkg:B (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580062 8tkg:B (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    580063 8tkg:B (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    580064 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580065 8tkg:C (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580066 8tkg:C (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580067 8tkg:C (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    580068 8tkg:C (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    580069 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580070 8tkg:D (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580071 8tkg:D (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580072 8tkg:D (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    580073 8tkg:D (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    580074 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    580075 8tkh:A (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580076 8tkh:A (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580077 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580078 8tkh:B (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580079 8tkh:B (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580080 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580081 8tkh:C (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580082 8tkh:C (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580083 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580084 8tkh:D (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580085 8tkh:D (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580086 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580087 8tki:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580088 8tki:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580089 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580090 8tki:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580091 8tki:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580092 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580093 8tki:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580094 8tki:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580095 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580096 8tki:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580097 8tki:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580098 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    580099 8tkl:A (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    580100 8tkl:A (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    580101 8tkl:B (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    580102 8tkl:B (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    580103 8tkm:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    580104 8tkm:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    580105 8tkm:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    580106 8tkm:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    580107 8tkn:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    580108 8tkn:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    580109 8tkn:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    580110 8tkn:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    580111 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    580112 8tkz:B (2.06) BS01 CO N/A GO:0004427 ... O94725 N/A
    580113 8tkz:B (2.06) BS02 ZN N/A GO:0004427 ... O94725 N/A
    580114 8tkz:B (2.06) BS03 ZN N/A GO:0004427 ... O94725 N/A
    580115 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    580116 8tl6:A (2.63) BS01 peptide ? GO:0003676 ... Q16531 38538798
    580117 8tl6:B (2.63) BS01 peptide ? GO:0005515 ... Q96JK2 38538798
    580118 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    580119 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    580120 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    580121 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    580122 8tl9:A (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580123 8tl9:A (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580124 8tl9:A (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    580125 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580126 8tl9:B (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580127 8tl9:B (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580128 8tl9:B (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    580129 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580130 8tl9:C (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580131 8tl9:C (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580132 8tl9:C (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    580133 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580134 8tl9:D (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580135 8tl9:D (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580136 8tl9:D (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    580137 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580138 8tla:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580139 8tla:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580140 8tla:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    580141 8tla:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580142 8tla:B (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580143 8tla:B (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580144 8tla:B (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    580145 8tla:B (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580146 8tla:C (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580147 8tla:C (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580148 8tla:C (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    580149 8tla:C (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580150 8tla:D (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    580151 8tla:D (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    580152 8tla:D (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    580153 8tla:D (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    580154 8tlc:A (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    580155 8tlc:B (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    580156 8tlq:A (3.53) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    580157 8tlq:A (3.53) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    580158 8tlq:A (3.53) BS03 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    580159 8tlq:A (3.53) BS04 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    580160 8tlq:A (3.53) BS05 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    580161 8tlq:B (3.53) BS01 dna 2.7.7.- GO:0000785 ... P12689 38720088
    580162 8tlq:B (3.53) BS02 dna 2.7.7.- GO:0000785 ... P12689 38720088
    580163 8tlt:A (2.85) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    580164 8tlt:A (2.85) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    580165 8tlt:A (2.85) BS03 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    580166 8tlt:A (2.85) BS04 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    580167 8tlt:A (2.85) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    580168 8tlv:A (2.659) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580169 8tlv:A (2.659) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580170 8tlv:A (2.659) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580171 8tlw:A (2.106) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580172 8tlw:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580173 8tlw:A (2.106) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580174 8tlx:A (2.097) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580175 8tlx:A (2.097) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580176 8tlx:A (2.097) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    580177 8tm7:A (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    580178 8tm7:A (1.79) BS02 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    580179 8tm7:A (1.79) BS03 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    580180 8tm7:B (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    580181 8tm7:B (1.79) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    580182 8tm7:B (1.79) BS03 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    580183 8tnp:B (3.3) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    580184 8tnp:B (3.3) BS02 Y70 ? GO:0005515 ... Q96SW2 38484051
    580185 8tnp:C (3.3) BS01 Y70 ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580186 8tnp:C (3.3) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580187 8tnq:B (2.41) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    580188 8tnq:B (2.41) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    580189 8tnq:C (2.41) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580190 8tnq:C (2.41) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580191 8tnr:B (2.5) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    580192 8tnr:B (2.5) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    580193 8tnr:C (2.5) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580194 8tnr:C (2.5) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    580195 8tny:A (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    580196 8tny:B (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    580197 8to1:I (2.8) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    580198 8to1:I (2.8) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    580199 8to1:J (2.8) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    580200 8to1:J (2.8) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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