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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    579001 8t8c:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    579002 8t8c:2b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    579003 8t8c:2c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    579004 8t8c:2d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    579005 8t8c:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    579006 8t8c:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    579007 8t8c:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    579008 8t8c:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37433044
    579009 8t8c:2g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    579010 8t8c:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    579011 8t8c:2i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    579012 8t8c:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    579013 8t8c:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 37433044
    579014 8t8c:2k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    579015 8t8c:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    579016 8t8c:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    579017 8t8c:2m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    579018 8t8c:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    579019 8t8c:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    579020 8t8c:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    579021 8t8c:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    579022 8t8c:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    579023 8t8c:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    579024 8t8c:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    579025 8t8c:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    579026 8t8c:2t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    579027 8t8c:2t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    579028 8t8c:2y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    579029 8t8m:A (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    579030 8t8m:B (3.0) BS01 QUS ? GO:0004930 ... P41594 38632403
    579031 8t8u:A (2.01) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579032 8t8u:A (2.01) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579033 8t8v:A (1.96) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579034 8t8v:A (1.96) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579035 8t8w:A (2.0) BS01 ATP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579036 8t8x:A (2.59) BS01 ANP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579037 8t8x:A (2.59) BS02 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579038 8t8y:A (2.5) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579039 8t8y:A (2.5) BS02 I3P ? GO:0000828 ... A0A3G4ZNY6 38216735
    579040 8t8z:A (2.6) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579041 8t8z:A (2.6) BS02 ZNU ? GO:0000828 ... A0A3G4ZNY6 38216735
    579042 8t90:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579043 8t90:A (2.3) BS02 ZNZ ? GO:0000828 ... A0A3G4ZNY6 38216735
    579044 8t91:A (2.56) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579045 8t91:A (2.56) BS02 IHP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579046 8t92:A (2.3) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579047 8t92:A (2.3) BS02 XID ? GO:0000828 ... A0A3G4ZNY6 38216735
    579048 8t92:A (2.3) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579049 8t93:A (1.95) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579050 8t93:A (1.95) BS02 ZNQ ? GO:0000828 ... A0A3G4ZNY6 38216735
    579051 8t95:A (2.61) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579052 8t95:A (2.61) BS02 I4P ? GO:0000828 ... A0A3G4ZNY6 38216735
    579053 8t96:A (2.36) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579054 8t96:A (2.36) BS02 K7V ? GO:0000828 ... A0A3G4ZNY6 38216735
    579055 8t96:A (2.36) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579056 8t97:A (2.46) BS01 ADP ? GO:0000828 ... A0A3G4ZNY6 38216735
    579057 8t97:A (2.46) BS02 KGN ? GO:0000828 ... A0A3G4ZNY6 38216735
    579058 8t97:A (2.46) BS03 PO4 ? GO:0000828 ... A0A3G4ZNY6 38216735
    579059 8t9a:B (3.17) BS01 peptide ? GO:0005515 ... Q5T6F0 N/A
    579060 8t9d:C (4.66) BS01 peptide N/A GO:0000151 ... O75586 38955181
    579061 8t9f:A (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    579062 8t9f:A (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    579063 8t9f:B (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    579064 8t9f:B (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    579065 8t9f:C (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    579066 8t9f:C (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    579067 8t9f:D (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    579068 8t9f:E (2.6) BS01 dna ? GO:0000786 ... P84233 37595555
    579069 8t9f:E (2.6) BS02 dna ? GO:0000786 ... P84233 37595555
    579070 8t9f:F (2.6) BS01 dna ? GO:0000786 ... P62799 37595555
    579071 8t9f:F (2.6) BS02 dna ? GO:0000786 ... P62799 37595555
    579072 8t9f:G (2.6) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    579073 8t9f:G (2.6) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    579074 8t9f:H (2.6) BS01 dna ? GO:0000786 ... P02281 37595555
    579075 8t9f:H (2.6) BS02 dna ? GO:0000786 ... P02281 37595555
    579076 8t9h:A (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    579077 8t9h:A (3.37) BS02 dna ? GO:0000786 ... P84233 36993485
    579078 8t9h:B (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    579079 8t9h:B (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    579080 8t9h:C (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    579081 8t9h:C (3.37) BS02 dna ? GO:0000786 ... P06897 36993485
    579082 8t9h:D (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    579083 8t9h:E (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    579084 8t9h:E (3.37) BS02 dna ? GO:0000786 ... P84233 36993485
    579085 8t9h:F (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    579086 8t9h:F (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    579087 8t9h:G (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    579088 8t9h:H (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    579089 8ta2:A (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    579090 8ta2:A (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    579091 8ta2:B (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    579092 8ta2:B (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    579093 8taf:J (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579094 8taf:L (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579095 8taf:M (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579096 8taf:N (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579097 8taf:O (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579098 8taf:P (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579099 8taf:Q (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579100 8taf:R (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    579101 8tag:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579102 8tag:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579103 8tag:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    579104 8tah:A (2.89) BS01 peptide ? GO:0003779 ... P61157 37898612
    579105 8tah:A (2.89) BS02 ATP ? GO:0003779 ... P61157 37898612
    579106 8tah:B (2.89) BS01 ATP ? GO:0003779 ... A7MB62 37898612
    579107 8tai:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579108 8tai:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579109 8tai:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    579110 8tal:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579111 8tal:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    579112 8tal:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    579113 8tao:A (2.9) BS01 QUS ? GO:0004930 ... P41594 38632403
    579114 8tao:B (2.9) BS01 YKU ? GO:0004930 ... P41594 38632403
    579115 8tao:B (2.9) BS02 QUS ? GO:0004930 ... P41594 38632403
    579116 8tat:A (1.6) BS01 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    579117 8tat:A (1.6) BS02 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    579118 8tav:A (1.39) BS01 ZKR N/A GO:0016020 ... Q2G025 N/A
    579119 8tav:A (1.39) BS02 ZKR N/A GO:0016020 ... Q2G025 N/A
    579120 8tav:A (1.39) BS03 ZKR N/A GO:0016020 ... Q2G025 N/A
    579121 8tav:A (1.39) BS04 CA N/A GO:0016020 ... Q2G025 N/A
    579122 8tav:A (1.39) BS05 CA N/A GO:0016020 ... Q2G025 N/A
    579123 8tb7:R (2.94) BS01 ZOB ? GO:0004930 ... P0ABE7
    Q9BZJ8    		 37741852
    579124 8tbf:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579125 8tbf:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579126 8tbf:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579127 8tbf:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579128 8tbf:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579129 8tbf:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579130 8tbf:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579131 8tbf:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579132 8tbg:A (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    579133 8tbg:A (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    579134 8tbg:A (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    579135 8tbg:B (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    579136 8tbg:B (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    579137 8tbg:B (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    579138 8tbg:C (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579139 8tbg:D (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579140 8tbh:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579141 8tbh:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579142 8tbh:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579143 8tbh:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579144 8tbh:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579145 8tbh:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579146 8tbh:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579147 8tbh:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579148 8tbi:A (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    579149 8tbi:A (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    579150 8tbi:A (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    579151 8tbi:B (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    579152 8tbi:B (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    579153 8tbi:B (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    579154 8tbi:C (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579155 8tbi:D (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579156 8tbj:A (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579157 8tbj:A (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579158 8tbj:A (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579159 8tbj:B (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579160 8tbj:B (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579161 8tbj:B (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579162 8tbj:C (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579163 8tbj:D (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579164 8tbk:A (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579165 8tbk:A (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579166 8tbk:A (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579167 8tbk:B (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579168 8tbk:B (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579169 8tbk:B (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579170 8tbk:C (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579171 8tbk:D (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579172 8tbl:A (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579173 8tbl:A (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579174 8tbl:A (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579175 8tbl:B (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579176 8tbl:B (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579177 8tbl:B (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579178 8tbl:C (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579179 8tbl:D (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579180 8tbm:A (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579181 8tbm:A (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579182 8tbm:A (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579183 8tbm:B (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579184 8tbm:B (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579185 8tbm:B (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579186 8tbm:C (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579187 8tbm:D (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579188 8tbn:A (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579189 8tbn:A (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579190 8tbn:A (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579191 8tbn:B (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    579192 8tbn:B (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    579193 8tbn:B (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    579194 8tbn:C (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579195 8tbn:D (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    579196 8tbp:A (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    579197 8tbp:B (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    579198 8tbp:C (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    579199 8tbp:D (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    579200 8tbs:A (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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