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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    578801 8t8c:10 (2.6) BS05 MG ? GO:0003735 ... P60493 37433044
    578802 8t8c:10 (2.6) BS06 MG ? GO:0003735 ... P60493 37433044
    578803 8t8c:11 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    578804 8t8c:11 (2.6) BS02 MG ? GO:0003735 ... P60494 37433044
    578805 8t8c:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    578806 8t8c:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    578807 8t8c:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    578808 8t8c:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    578809 8t8c:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    578810 8t8c:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    578811 8t8c:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    578812 8t8c:15 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    578813 8t8c:15 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    578814 8t8c:15 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    578815 8t8c:15 (2.6) BS04 MG ? GO:0003735 ... P80339 37433044
    578816 8t8c:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 37433044
    578817 8t8c:16 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    578818 8t8c:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    578819 8t8c:17 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    578820 8t8c:17 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    578821 8t8c:17 (2.6) BS03 MG ? GO:0003735 ... P80340 37433044
    578822 8t8c:17 (2.6) BS04 MG ? GO:0003735 ... P80340 37433044
    578823 8t8c:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    578824 8t8c:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    578825 8t8c:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    578826 8t8c:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    578827 8t8c:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    578828 8t8c:1D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    578829 8t8c:1D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    578830 8t8c:1D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    578831 8t8c:1D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    578832 8t8c:1D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    578833 8t8c:1D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    578834 8t8c:1D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    578835 8t8c:1D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    578836 8t8c:1D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    578837 8t8c:1D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    578838 8t8c:1D (2.6) BS11 MG ? GO:0002181 ... P60405 37433044
    578839 8t8c:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    578840 8t8c:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    578841 8t8c:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37433044
    578842 8t8c:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 37433044
    578843 8t8c:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 37433044
    578844 8t8c:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    578845 8t8c:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    578846 8t8c:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    578847 8t8c:1F (2.6) BS04 ARG ? GO:0003735 ... Q5SHN9 37433044
    578848 8t8c:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    578849 8t8c:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 37433044
    578850 8t8c:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 37433044
    578851 8t8c:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 37433044
    578852 8t8c:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 37433044
    578853 8t8c:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 37433044
    578854 8t8c:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 37433044
    578855 8t8c:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 37433044
    578856 8t8c:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 37433044
    578857 8t8c:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    578858 8t8c:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    578859 8t8c:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37433044
    578860 8t8c:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37433044
    578861 8t8c:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    578862 8t8c:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    578863 8t8c:1N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    578864 8t8c:1N (2.6) BS02 MG ? GO:0003729 ... P60488 37433044
    578865 8t8c:1N (2.6) BS03 MG ? GO:0003729 ... P60488 37433044
    578866 8t8c:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    578867 8t8c:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    578868 8t8c:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 37433044
    578869 8t8c:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    578870 8t8c:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37433044
    578871 8t8c:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37433044
    578872 8t8c:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    578873 8t8c:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    578874 8t8c:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    578875 8t8c:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37433044
    578876 8t8c:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37433044
    578877 8t8c:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37433044
    578878 8t8c:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 37433044
    578879 8t8c:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    578880 8t8c:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    578881 8t8c:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37433044
    578882 8t8c:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    578883 8t8c:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    578884 8t8c:1T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    578885 8t8c:1T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    578886 8t8c:1U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    578887 8t8c:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    578888 8t8c:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37433044
    578889 8t8c:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37433044
    578890 8t8c:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37433044
    578891 8t8c:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37433044
    578892 8t8c:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37433044
    578893 8t8c:1V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    578894 8t8c:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    578895 8t8c:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    578896 8t8c:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37433044
    578897 8t8c:1V (2.6) BS05 MG ? GO:0003723 ... P60492 37433044
    578898 8t8c:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    578899 8t8c:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37433044
    578900 8t8c:1X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    578901 8t8c:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    578902 8t8c:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    578903 8t8c:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    578904 8t8c:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 37433044
    578905 8t8c:1b (2.6) BS01 rna ? GO:0003735 ... P80371 37433044
    578906 8t8c:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37433044
    578907 8t8c:1c (2.6) BS01 rna ? GO:0003676 ... P80372 37433044
    578908 8t8c:1d (2.6) BS01 rna ? GO:0003723 ... P80373 37433044
    578909 8t8c:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 37433044
    578910 8t8c:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 37433044
    578911 8t8c:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37433044
    578912 8t8c:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 37433044
    578913 8t8c:1g (2.6) BS01 rna ? GO:0000028 ... P17291 37433044
    578914 8t8c:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 37433044
    578915 8t8c:1i (2.6) BS01 rna ? GO:0000049 ... P80374 37433044
    578916 8t8c:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 37433044
    578917 8t8c:1k (2.6) BS01 rna ? GO:0003735 ... P80376 37433044
    578918 8t8c:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37433044
    578919 8t8c:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 37433044
    578920 8t8c:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37433044
    578921 8t8c:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 37433044
    578922 8t8c:1m (2.6) BS01 rna ? GO:0000049 ... P80377 37433044
    578923 8t8c:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37433044
    578924 8t8c:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 37433044
    578925 8t8c:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37433044
    578926 8t8c:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 37433044
    578927 8t8c:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 37433044
    578928 8t8c:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 37433044
    578929 8t8c:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 37433044
    578930 8t8c:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 37433044
    578931 8t8c:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 37433044
    578932 8t8c:1t (2.6) BS01 rna ? GO:0003723 ... P80380 37433044
    578933 8t8c:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37433044
    578934 8t8c:1y (2.6) BS01 rna ? GO:0005515 ... P0AD49 37433044
    578935 8t8c:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37433044
    578936 8t8c:20 (2.6) BS01 rna ? GO:0003735 ... P60493 37433044
    578937 8t8c:20 (2.6) BS02 rna ? GO:0003735 ... P60493 37433044
    578938 8t8c:20 (2.6) BS03 MG ? GO:0003735 ... P60493 37433044
    578939 8t8c:21 (2.6) BS01 rna ? GO:0003735 ... P60494 37433044
    578940 8t8c:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    578941 8t8c:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    578942 8t8c:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    578943 8t8c:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    578944 8t8c:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    578945 8t8c:25 (2.6) BS01 rna ? GO:0003735 ... P80339 37433044
    578946 8t8c:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37433044
    578947 8t8c:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37433044
    578948 8t8c:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37433044
    578949 8t8c:26 (2.6) BS01 rna ? GO:0000049 ... P35871 37433044
    578950 8t8c:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 37433044
    578951 8t8c:27 (2.6) BS01 rna ? GO:0003735 ... P80340 37433044
    578952 8t8c:27 (2.6) BS02 MG ? GO:0003735 ... P80340 37433044
    578953 8t8c:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    578954 8t8c:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    578955 8t8c:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    578956 8t8c:2D (2.6) BS01 rna ? GO:0002181 ... P60405 37433044
    578957 8t8c:2D (2.6) BS02 rna ? GO:0002181 ... P60405 37433044
    578958 8t8c:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37433044
    578959 8t8c:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37433044
    578960 8t8c:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37433044
    578961 8t8c:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37433044
    578962 8t8c:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37433044
    578963 8t8c:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37433044
    578964 8t8c:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37433044
    578965 8t8c:2D (2.6) BS10 MG ? GO:0002181 ... P60405 37433044
    578966 8t8c:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 37433044
    578967 8t8c:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37433044
    578968 8t8c:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 37433044
    578969 8t8c:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37433044
    578970 8t8c:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37433044
    578971 8t8c:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37433044
    578972 8t8c:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37433044
    578973 8t8c:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 37433044
    578974 8t8c:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 37433044
    578975 8t8c:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 37433044
    578976 8t8c:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 37433044
    578977 8t8c:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37433044
    578978 8t8c:2N (2.6) BS01 rna ? GO:0003729 ... P60488 37433044
    578979 8t8c:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 37433044
    578980 8t8c:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 37433044
    578981 8t8c:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 37433044
    578982 8t8c:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 37433044
    578983 8t8c:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 37433044
    578984 8t8c:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37433044
    578985 8t8c:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 37433044
    578986 8t8c:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37433044
    578987 8t8c:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 37433044
    578988 8t8c:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 37433044
    578989 8t8c:2T (2.6) BS01 rna ? GO:0003735 ... P60490 37433044
    578990 8t8c:2T (2.6) BS02 rna ? GO:0003735 ... P60490 37433044
    578991 8t8c:2U (2.6) BS01 rna ? GO:0000027 ... P60491 37433044
    578992 8t8c:2U (2.6) BS02 MG ? GO:0000027 ... P60491 37433044
    578993 8t8c:2V (2.6) BS01 rna ? GO:0003723 ... P60492 37433044
    578994 8t8c:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37433044
    578995 8t8c:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37433044
    578996 8t8c:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 37433044
    578997 8t8c:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 37433044
    578998 8t8c:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 37433044
    578999 8t8c:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37433044
    579000 8t8c:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 37433044
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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