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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    578401 8t4s:C (2.6) BS01 rna ? GO:0002181 ... P15880 37733586
    578402 8t4s:C (2.6) BS02 peptide ? GO:0002181 ... P15880 37733586
    578403 8t4s:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 37733586
    578404 8t4s:D (2.6) BS02 peptide 4.2.99.18 GO:0000977 ... P23396 37733586
    578405 8t4s:E (2.6) BS01 rna ? GO:0002181 ... P62701 37733586
    578406 8t4s:F (2.6) BS01 rna ? GO:0000028 ... P46782 37733586
    578407 8t4s:G (2.6) BS01 rna ? GO:0000082 ... P62753 37733586
    578408 8t4s:H (2.6) BS01 rna ? GO:0001843 ... P62081 37733586
    578409 8t4s:I (2.6) BS01 rna ? GO:0000462 ... P62241 37733586
    578410 8t4s:J (2.6) BS01 rna ? GO:0002181 ... P46781 37733586
    578411 8t4s:K (2.6) BS01 rna ? GO:0002181 ... P46783 37733586
    578412 8t4s:L (2.6) BS01 rna ? GO:0002181 ... P62280 37733586
    578413 8t4s:M (2.6) BS01 rna ? GO:0002181 ... P25398 37733586
    578414 8t4s:N (2.6) BS01 rna ? GO:0002181 ... P62277 37733586
    578415 8t4s:O (2.6) BS01 rna ? GO:0000028 ... P62263 37733586
    578416 8t4s:P (2.6) BS01 rna ? GO:0000028 ... P62841 37733586
    578417 8t4s:Q (2.6) BS01 rna ? GO:0000462 ... P62249 37733586
    578418 8t4s:R (2.6) BS01 rna ? GO:0002181 ... P08708 37733586
    578419 8t4s:S (2.6) BS01 rna ? GO:0002181 ... P62269 37733586
    578420 8t4s:T (2.6) BS01 rna ? GO:0000028 ... P39019 37733586
    578421 8t4s:U (2.6) BS01 rna ? GO:0002181 ... P60866 37733586
    578422 8t4s:W (2.6) BS01 rna ? GO:0002181 ... P62244 37733586
    578423 8t4s:X (2.6) BS01 rna ? GO:0002181 ... P62266 37733586
    578424 8t4s:Y (2.6) BS01 rna ? GO:0002181 ... P62847 37733586
    578425 8t4s:Z (2.6) BS01 rna ? GO:0002181 ... P62851 37733586
    578426 8t4s:a (2.6) BS01 rna ? GO:0002181 ... P62854 37733586
    578427 8t4s:a (2.6) BS02 ZN ? GO:0002181 ... P62854 37733586
    578428 8t4s:b (2.6) BS01 rna ? GO:0000028 ... P42677 37733586
    578429 8t4s:c (2.6) BS01 rna ? GO:0000028 ... P62857 37733586
    578430 8t4s:d (2.6) BS01 rna ? GO:0002181 ... P62273 37733586
    578431 8t4s:d (2.6) BS02 ZN ? GO:0002181 ... P62273 37733586
    578432 8t4s:e (2.6) BS01 rna ? GO:0002181 ... P62861 37733586
    578433 8t4s:f (2.6) BS01 rna ? GO:0002181 ... P62979 37733586
    578434 8t4s:f (2.6) BS02 ZN ? GO:0002181 ... P62979 37733586
    578435 8t4s:g (2.6) BS01 rna ? GO:0001891 ... P63244 37733586
    578436 8t4v:A (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    578437 8t4v:A (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    578438 8t4v:B (1.47) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38443470
    578439 8t4v:B (1.47) BS02 Y63 3.6.5.2 GO:0003924 ... P01116 38443470
    578440 8t4y:A (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578441 8t4y:B (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578442 8t4y:C (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578443 8t4y:D (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578444 8t50:A (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578445 8t50:B (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578446 8t50:C (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578447 8t50:D (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    578448 8t56:A (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    578449 8t56:A (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    578450 8t56:A (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    578451 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    578452 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    578453 8t56:B (2.8) BS01 peptide ? GO:0005227 ... Q5XEZ5 38103547
    578454 8t56:B (2.8) BS02 Y01 ? GO:0005227 ... Q5XEZ5 38103547
    578455 8t56:B (2.8) BS03 LBN ? GO:0005227 ... Q5XEZ5 38103547
    578456 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    578457 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    578458 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    578459 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    578460 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    578461 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    578462 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    578463 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    578464 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    578465 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    578466 8t5s:A (2.9) BS01 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    578467 8t5s:A (2.9) BS02 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    578468 8t5s:A (2.9) BS03 ZN 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    578469 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    578470 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578471 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578472 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578473 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578474 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578475 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578476 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578477 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578478 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578479 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578480 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578481 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578482 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    578483 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    578484 8t69:A (2.89) BS01 YHL ? GO:0001975 ... Q05940 37914936
    578485 8t6a:A (3.17) BS01 YHR ? GO:0001975 ... Q05940 37914936
    578486 8t6b:A (3.72) BS01 SRO ? GO:0001975 ... Q05940 37914936
    578487 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    578488 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    578489 8t6f:A (1.56) BS03 YI7 N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    578490 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    578491 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    578492 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578493 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578494 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578495 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578496 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578497 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578498 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    578499 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578500 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578501 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578502 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578503 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578504 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578505 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578506 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    578507 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212
    38485923
    578508 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212
    38485923
    578509 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212
    38485923
    578510 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212
    38485923
    578511 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    578512 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    578513 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    578514 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    578515 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    578516 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    578517 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    578518 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    578519 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    578520 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    578521 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    578522 8t70:A (1.892) BS01 peptide 2.5.1.58
    2.5.1.59
    GO:0004659 ... J9VSJ6 N/A
    578523 8t70:B (1.892) BS01 peptide 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578524 8t70:B (1.892) BS02 ZN 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578525 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578526 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578527 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578528 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578529 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    578530 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    578531 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    578532 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578533 8t72:A (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578534 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578535 8t72:B (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578536 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578537 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    578538 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    578539 8t74:A (1.65) BS01 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578540 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578541 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578542 8t75:A (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578543 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578544 8t75:C (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578545 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578546 8t75:E (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578547 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    578548 8t75:G (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    578549 8t7e:A (3.08) BS01 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 38151585
    578550 8t7e:A (3.08) BS02 dna 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 38151585
    578551 8t7h:A (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    578552 8t7h:B (3.3) BS01 QUS ? GO:0004930 ... P41594 38632403
    578553 8t7u:A (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578554 8t7u:B (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578555 8t7u:C (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578556 8t7u:D (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578557 8t7u:E (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578558 8t7u:F (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578559 8t7u:G (3.74) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578560 8t7v:A (2.25) BS01 ZTA ? GO:0005856 ... O00522 37974623
    578561 8t7v:B (2.25) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    578562 8t7v:B (2.25) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    578563 8t85:A (2.38) BS01 MG ? GO:0000156 ... P0AEV1 37949227
    578564 8t85:A (2.38) BS02 BEF ? GO:0000156 ... P0AEV1 37949227
    578565 8t8b:10 (2.65) BS01 rna ? GO:0003735 ... P60493 37433044
    578566 8t8b:10 (2.65) BS02 rna ? GO:0003735 ... P60493 37433044
    578567 8t8b:10 (2.65) BS03 MG ? GO:0003735 ... P60493 37433044
    578568 8t8b:10 (2.65) BS04 MG ? GO:0003735 ... P60493 37433044
    578569 8t8b:10 (2.65) BS05 MG ? GO:0003735 ... P60493 37433044
    578570 8t8b:10 (2.65) BS06 MG ? GO:0003735 ... P60493 37433044
    578571 8t8b:11 (2.65) BS01 rna ? GO:0003735 ... P60494 37433044
    578572 8t8b:11 (2.65) BS02 MG ? GO:0003735 ... P60494 37433044
    578573 8t8b:12 (2.65) BS01 rna ? GO:0003735 ... Q5SHP6 37433044
    578574 8t8b:13 (2.65) BS01 rna ? GO:0003735 ... Q5SHQ6 37433044
    578575 8t8b:13 (2.65) BS02 rna ? GO:0003735 ... Q5SHQ6 37433044
    578576 8t8b:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 37433044
    578577 8t8b:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 37433044
    578578 8t8b:14 (2.65) BS01 rna ? GO:0003735 ... Q5SJE1 37433044
    578579 8t8b:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 37433044
    578580 8t8b:15 (2.65) BS01 rna ? GO:0003735 ... P80339 37433044
    578581 8t8b:15 (2.65) BS02 MG ? GO:0003735 ... P80339 37433044
    578582 8t8b:15 (2.65) BS03 MG ? GO:0003735 ... P80339 37433044
    578583 8t8b:15 (2.65) BS04 MG ? GO:0003735 ... P80339 37433044
    578584 8t8b:15 (2.65) BS05 MG ? GO:0003735 ... P80339 37433044
    578585 8t8b:15 (2.65) BS06 ZN ? GO:0003735 ... P80339 37433044
    578586 8t8b:16 (2.65) BS01 rna ? GO:0000049 ... P35871 37433044
    578587 8t8b:16 (2.65) BS02 ZN ? GO:0000049 ... P35871 37433044
    578588 8t8b:17 (2.65) BS01 rna ? GO:0003735 ... P80340 37433044
    578589 8t8b:17 (2.65) BS02 MG ? GO:0003735 ... P80340 37433044
    578590 8t8b:17 (2.65) BS03 MG ? GO:0003735 ... P80340 37433044
    578591 8t8b:18 (2.65) BS01 rna ? GO:0003735 ... Q5SKU1 37433044
    578592 8t8b:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 37433044
    578593 8t8b:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 37433044
    578594 8t8b:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 37433044
    578595 8t8b:19 (2.65) BS01 rna ? GO:0003735 ... Q5SHR2 37433044
    578596 8t8b:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 37433044
    578597 8t8b:1D (2.65) BS01 rna ? GO:0002181 ... P60405 37433044
    578598 8t8b:1D (2.65) BS02 rna ? GO:0002181 ... P60405 37433044
    578599 8t8b:1D (2.65) BS03 MG ? GO:0002181 ... P60405 37433044
    578600 8t8b:1D (2.65) BS04 MG ? GO:0002181 ... P60405 37433044

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218