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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    578201 8t1e:B (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578202 8t1e:B (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578203 8t1e:B (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578204 8t1e:C (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578205 8t1e:C (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578206 8t1e:C (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578207 8t1e:C (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578208 8t1e:C (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578209 8t1e:C (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578210 8t1e:C (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578211 8t1e:C (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578212 8t1e:C (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578213 8t1e:D (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578214 8t1e:D (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578215 8t1e:D (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578216 8t1e:D (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578217 8t1e:D (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578218 8t1e:D (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578219 8t1e:D (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578220 8t1e:D (2.77) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578221 8t1e:D (2.77) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578222 8t1f:A (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    578223 8t1f:B (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    578224 8t1f:C (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    578225 8t1f:D (3.49) BS01 X7N ? GO:0000122 ... Q9HBA0 37353478
    578226 8t1j:A (2.7) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    578227 8t1j:A (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    578228 8t1j:A (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578229 8t1j:A (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    578230 8t1j:B (2.7) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578231 8t1j:B (2.7) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    578232 8t1j:B (2.7) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578233 8t1j:B (2.7) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    578234 8t1k:A (3.14) BS01 ZN 1.14.13.39 GO:0001666 ... P29476 37979917
    578235 8t1k:A (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    578236 8t1k:A (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578237 8t1k:A (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    578238 8t1k:A (3.14) BS05 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578239 8t1k:B (3.14) BS01 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578240 8t1k:B (3.14) BS02 ARG 1.14.13.39 GO:0001666 ... P29476 37979917
    578241 8t1k:B (3.14) BS03 H4B 1.14.13.39 GO:0001666 ... P29476 37979917
    578242 8t1k:B (3.14) BS04 HEM 1.14.13.39 GO:0001666 ... P29476 37979917
    578243 8t1l:C (4.83) BS01 peptide N/A GO:0000151 ... Q921D4 N/A
    578244 8t1o:A (3.3) BS01 PIO ? GO:0005794 ... P17427 37364761
    578245 8t1o:M (3.3) BS01 peptide ? GO:0002092 ... P84091 37364761
    578246 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    578247 8t1p:C (2.96) BS02 MG 7.6.2.- GO:0005524 ... O07550 37938578
    578248 8t1p:C (2.96) BS03 AOV 7.6.2.- GO:0005524 ... O07550 37938578
    578249 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    578250 8t1p:D (2.96) BS02 AOV 7.6.2.- GO:0005524 ... O07549 37938578
    578251 8t1p:D (2.96) BS03 MG 7.6.2.- GO:0005524 ... O07549 37938578
    578252 8t1y:A (2.14) BS01 DAN 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578253 8t1z:A (1.93) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578254 8t24:A (2.29) BS01 FUD 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578255 8t26:A (1.42) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578256 8t27:A (1.41) BS01 SIA 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578257 8t27:A (1.41) BS02 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578258 8t27:A (1.41) BS03 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578259 8t27:A (1.41) BS04 GAL 3.2.1.18 GO:0004308 ... Q7MX62 37747935
    578260 8t2n:A (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    578261 8t2n:C (1.88) BS01 peptide ? GO:0000045 ... O95166 38512999
    578262 8t2u:A (3.1) BS01 peptide ? GO:0001525 ... P08514 37443315
    578263 8t2u:A (3.1) BS02 CA ? GO:0001525 ... P08514 37443315
    578264 8t2u:A (3.1) BS03 CA ? GO:0001525 ... P08514 37443315
    578265 8t2u:A (3.1) BS04 CA ? GO:0001525 ... P08514 37443315
    578266 8t2u:A (3.1) BS05 CA ? GO:0001525 ... P08514 37443315
    578267 8t2u:B (3.1) BS01 peptide ? GO:0001618 ... P05106 37443315
    578268 8t2u:B (3.1) BS02 MG ? GO:0001618 ... P05106 37443315
    578269 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    578270 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    578271 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    578272 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    578273 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    578274 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    578275 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    578276 8t2v:B (3.4) BS01 MG ? GO:0001618 ... P05106 37443315
    578277 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    578278 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    578279 8t31:A (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    578280 8t31:C (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    578281 8t31:E (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    578282 8t31:G (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    578283 8t31:I (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    578284 8t32:A (2.051) BS01 peptide ? GO:0000045 ... O95166 38726830
    578285 8t33:A (1.599) BS01 peptide ? GO:0000045 ... O95166 38726830
    578286 8t33:A (1.599) BS02 ZN ? GO:0000045 ... O95166 38726830
    578287 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    578288 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    578289 8t3l:A (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    578290 8t3l:B (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    578291 8t3l:C (3.6) BS01 NKN ? GO:0005216 ... O35433 38698206
    578292 8t3l:D (3.6) BS01 8IJ ? GO:0005216 ... O35433 38698206
    578293 8t3m:A (3.5) BS01 85R ? GO:0005216 ... O35433 38698206
    578294 8t3m:B (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    578295 8t3m:C (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    578296 8t3m:C (3.5) BS02 NKN ? GO:0005216 ... O35433 38698206
    578297 8t3m:D (3.5) BS01 NKN ? GO:0005216 ... O35433 38698206
    578298 8t3o:R (3.06) BS01 YN9 ? GO:0004930 ... Q5NUL3 38198545
    578299 8t3o:R (3.06) BS02 2Y5 ? GO:0004930 ... Q5NUL3 38198545
    578300 8t3q:R (3.14) BS01 HXA ? GO:0004930 ... Q5NUL3 38198545
    578301 8t3r:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    578302 8t3r:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    578303 8t3r:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    578304 8t3s:R (3.07) BS01 BUA ? GO:0004930 ... O15552 38198545
    578305 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    578306 8t3t:A (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    578307 8t3t:C (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    578308 8t3t:D (3.21) BS01 dna ? GO:0000786 ... P02281 37872231
    578309 8t3t:E (3.21) BS01 dna ? GO:0000786 ... P84233 37872231
    578310 8t3t:E (3.21) BS02 dna ? GO:0000786 ... P84233 37872231
    578311 8t3t:F (3.21) BS01 dna ? GO:0000786 ... P62799 37872231
    578312 8t3t:G (3.21) BS01 dna ? GO:0000786 ... P06897 37872231
    578313 8t3t:G (3.21) BS02 dna ? GO:0000786 ... P06897 37872231
    578314 8t3u:A (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    578315 8t3u:A (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    578316 8t3u:B (2.97) BS01 PIO ? GO:0005452 ... P02730 N/A
    578317 8t3u:B (2.97) BS02 PIO ? GO:0005452 ... P02730 N/A
    578318 8t3v:R (3.39) BS01 HXA ? GO:0004930 ... O14842 38198545
    578319 8t3w:A (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    578320 8t3w:A (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    578321 8t3w:B (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    578322 8t3w:B (3.25) BS02 dna ? GO:0000786 ... P62799 37872231
    578323 8t3w:C (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    578324 8t3w:C (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    578325 8t3w:D (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    578326 8t3w:E (3.25) BS01 dna ? GO:0000786 ... P84233 37872231
    578327 8t3w:E (3.25) BS02 dna ? GO:0000786 ... P84233 37872231
    578328 8t3w:F (3.25) BS01 dna ? GO:0000786 ... P62799 37872231
    578329 8t3w:G (3.25) BS01 dna ? GO:0000786 ... P06897 37872231
    578330 8t3w:G (3.25) BS02 dna ? GO:0000786 ... P06897 37872231
    578331 8t3w:H (3.25) BS01 dna ? GO:0000786 ... P02281 37872231
    578332 8t3y:A (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    578333 8t3y:A (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    578334 8t3y:B (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    578335 8t3y:B (3.47) BS02 dna ? GO:0000786 ... P62799 37872231
    578336 8t3y:C (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    578337 8t3y:C (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    578338 8t3y:D (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    578339 8t3y:E (3.47) BS01 dna ? GO:0000786 ... P84233 37872231
    578340 8t3y:E (3.47) BS02 dna ? GO:0000786 ... P84233 37872231
    578341 8t3y:F (3.47) BS01 dna ? GO:0000786 ... P62799 37872231
    578342 8t3y:G (3.47) BS01 dna ? GO:0000786 ... P06897 37872231
    578343 8t3y:G (3.47) BS02 dna ? GO:0000786 ... P06897 37872231
    578344 8t3y:H (3.47) BS01 dna ? GO:0000786 ... P02281 37872231
    578345 8t41:A (1.45) BS01 ZN 3.4.11.2 GO:0004177 ... L7N655 N/A
    578346 8t41:A (1.45) BS02 MG 3.4.11.2 GO:0004177 ... L7N655 N/A
    578347 8t42:A (3.6) BS01 peptide 3.6.5.- GO:0000226 ... P68363 38658656
    578348 8t42:A (3.6) BS02 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    578349 8t42:A (3.6) BS03 MG 3.6.5.- GO:0000226 ... P68363 38658656
    578350 8t42:A (3.6) BS04 G2P 3.6.5.- GO:0000226 ... P68363 38658656
    578351 8t42:B (3.6) BS01 peptide ? GO:0000226 ... P07437 38658656
    578352 8t42:B (3.6) BS02 G2P ? GO:0000226 ... P07437 38658656
    578353 8t42:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    578354 8t42:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    578355 8t42:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    578356 8t44:A (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    578357 8t44:A (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    578358 8t44:B (3.12) BS01 PIO ? GO:0005452 ... P02730 N/A
    578359 8t44:B (3.12) BS02 PIO ? GO:0005452 ... P02730 N/A
    578360 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    578361 8t45:A (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    578362 8t45:A (2.99) BS02 PIO ? GO:0005452 ... P02730 N/A
    578363 8t45:B (2.99) BS01 PIO ? GO:0005452 ... P02730 N/A
    578364 8t47:A (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    578365 8t47:A (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    578366 8t47:B (3.16) BS01 PIO ? GO:0005452 ... P02730 N/A
    578367 8t47:B (3.16) BS02 PIO ? GO:0005452 ... P02730 N/A
    578368 8t4e:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578369 8t4e:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578370 8t4f:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578371 8t4f:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578372 8t4g:A (3.5) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578373 8t4g:B (3.5) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578374 8t4h:A (3.8) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578375 8t4h:B (3.8) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578376 8t4i:A (5.1) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578377 8t4i:B (5.1) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578378 8t4j:A (3.9) BS01 peptide N/A GO:0002250 ... Q03518 N/A
    578379 8t4j:B (3.9) BS01 peptide N/A GO:0001913 ... Q03519 N/A
    578380 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    578381 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    578382 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    578383 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    578384 8t4o:A (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    578385 8t4o:A (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578386 8t4o:A (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578387 8t4o:B (2.68) BS01 Y5C 2.1.2.1 GO:0002082 ... P34897 38324671
    578388 8t4o:B (2.68) BS02 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578389 8t4o:B (2.68) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578390 8t4p:A (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578391 8t4p:A (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    578392 8t4p:A (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578393 8t4p:B (2.801) BS01 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578394 8t4p:B (2.801) BS02 Y5Z 2.1.2.1 GO:0002082 ... P34897 38324671
    578395 8t4p:B (2.801) BS03 PLG 2.1.2.1 GO:0002082 ... P34897 38324671
    578396 8t4r:A (1.2) BS01 peptide ? GO:0003677 ... P55895 38266163
    578397 8t4r:A (1.2) BS02 ZN ? GO:0003677 ... P55895 38266163
    578398 8t4r:A (1.2) BS03 ZN ? GO:0003677 ... P55895 38266163
    578399 8t4s:A (2.6) BS01 rna ? GO:0000028 ... P08865 37733586
    578400 8t4s:B (2.6) BS01 rna ? GO:0002181 ... P61247 37733586
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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