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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    578001 8syp:E (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    578002 8syp:F (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    578003 8syp:F (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    578004 8syp:G (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    578005 8syp:G (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    578006 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    578007 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    578008 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    578009 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    578010 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578011 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578012 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578013 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578014 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578015 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    578016 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    578017 8szc:C (3.06) BS02 HT1 7.6.2.- GO:0005524 ... O07550 37938578
    578018 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    578019 8szd:A (1.25) BS01 MG 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    578020 8sze:A (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    578021 8sze:B (2.5) BS01 TOP 1.5.1.3 GO:0004146 ... A0A3N4BLI0 N/A
    578022 8szf:A (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    578023 8szf:A (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    578024 8szf:A (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    578025 8szf:B (2.8) BS01 TRP ? GO:0004930 ... P41180 38326620
    578026 8szf:B (2.8) BS02 CA ? GO:0004930 ... P41180 38326620
    578027 8szf:B (2.8) BS03 YP4 ? GO:0004930 ... P41180 38326620
    578028 8szg:A (3.6) BS01 YP4 ? GO:0004930 ... P41180 38326620
    578029 8szg:A (3.6) BS02 CA ? GO:0004930 ... P41180 38326620
    578030 8szg:A (3.6) BS03 TRP ? GO:0004930 ... P41180 38326620
    578031 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    578032 8szg:B (3.6) BS02 TRP ? GO:0004930 ... P41180 38326620
    578033 8szg:B (3.6) BS03 YP4 ? GO:0004930 ... P41180 38326620
    578034 8szh:A (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    578035 8szh:A (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    578036 8szh:A (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    578037 8szh:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 38326620
    578038 8szh:B (3.1) BS02 CA ? GO:0004930 ... P41180 38326620
    578039 8szh:B (3.1) BS03 TRP ? GO:0004930 ... P41180 38326620
    578040 8szi:A (3.5) BS01 CA ? GO:0004930 ... P41180 38326620
    578041 8szi:A (3.5) BS02 TRP ? GO:0004930 ... P41180 38326620
    578042 8szi:A (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    578043 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    578044 8szi:B (3.5) BS02 CA ? GO:0004930 ... P41180 38326620
    578045 8szi:B (3.5) BS03 TRP ? GO:0004930 ... P41180 38326620
    578046 8szt:A (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    578047 8szt:B (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    578048 8szt:C (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    578049 8szt:D (2.5) BS01 ZN ? GO:0000122 ... R8YPJ7 37624144
    578050 8szu:A (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    578051 8szu:A (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    578052 8szu:A (1.75) BS03 ZN ? GO:0000122 ... R8YPJ7 37624144
    578053 8szu:A (1.75) BS04 X4U ? GO:0000122 ... R8YPJ7 37624144
    578054 8szu:B (1.75) BS01 X4U ? GO:0000122 ... R8YPJ7 37624144
    578055 8szu:B (1.75) BS02 X4U ? GO:0000122 ... R8YPJ7 37624144
    578056 8szu:B (1.75) BS03 X4U ? GO:0000122 ... R8YPJ7 37624144
    578057 8szu:B (1.75) BS04 ZN ? GO:0000122 ... R8YPJ7 37624144
    578058 8t03:A (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578059 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    578060 8t03:A (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    578061 8t03:B (2.72) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578062 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    578063 8t03:B (2.72) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    578064 8t04:A (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578065 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    578066 8t04:A (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    578067 8t04:B (2.98) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578068 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    578069 8t04:B (2.98) BS03 LBN ? GO:0000139 ... Q9D1N4 37770716
    578070 8t05:A (3.22) BS01 ZN N/A GO:0016020 ... N/A 37770716
    578071 8t05:A (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    578072 8t05:A (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    578073 8t05:B (3.22) BS01 ZN N/A GO:0016020 ... N/A 37770716
    578074 8t05:B (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    578075 8t05:B (3.22) BS03 LBN N/A GO:0016020 ... N/A 37770716
    578076 8t06:A (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578077 8t06:B (3.32) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578078 8t07:A (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578079 8t07:B (3.38) BS01 ZN ? GO:0000139 ... Q9D1N4 37770716
    578080 8t09:A (2.15) BS01 XHZ ? GO:0005856 ... O00522 37974623
    578081 8t09:B (2.15) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    578082 8t09:B (2.15) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    578083 8t0c:A (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578084 8t0c:B (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578085 8t0c:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578086 8t0c:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578087 8t0e:A (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578088 8t0e:B (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578089 8t0e:C (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578090 8t0e:D (3.3) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578091 8t0k:b (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578092 8t0k:c (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578093 8t0k:c (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    578094 8t0k:f (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578095 8t0k:f (3.58) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    578096 8t0k:g (3.58) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578097 8t0n:A (1.86) BS01 Y0B 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    578098 8t0n:A (1.86) BS02 NAD 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    578099 8t0r:b (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578100 8t0r:c (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578101 8t0r:c (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    578102 8t0r:f (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578103 8t0r:f (3.97) BS02 MG 3.6.5.5 GO:0001917 ... Q05193 38663399
    578104 8t0r:g (3.97) BS01 GDP 3.6.5.5 GO:0001917 ... Q05193 38663399
    578105 8t0s:A (1.95) BS01 peptide 2.3.2.23 GO:0004842 ... P60604 N/A
    578106 8t0t:A (1.75) BS01 Y6E 1.2.1.19
    1.2.1.28
    1.2.1.3
    1.2.1.36    		 GO:0000166 ... P00352 38364885
    578107 8t0y:A (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578108 8t0y:B (3.5) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578109 8t0y:C (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578110 8t0y:C (3.5) BS02 8IJ ? GO:0000122 ... O35433 38698206
    578111 8t0y:D (3.5) BS01 NKN ? GO:0000122 ... O35433 38698206
    578112 8t0z:A (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578113 8t0z:B (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578114 8t0z:C (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578115 8t0z:D (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578116 8t0z:E (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578117 8t0z:F (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578118 8t0z:G (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578119 8t0z:H (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578120 8t0z:I (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578121 8t0z:J (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578122 8t0z:K (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578123 8t0z:L (3.3) BS01 GLN 3.5.1.2 GO:0004359 ... Q9UI32 38438397
    578124 8t10:A (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    578125 8t10:B (3.7) BS01 8IJ ? GO:0000122 ... O35433 38698206
    578126 8t10:B (3.7) BS02 NKN ? GO:0000122 ... O35433 38698206
    578127 8t10:C (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    578128 8t10:D (3.7) BS01 NKN ? GO:0000122 ... O35433 38698206
    578129 8t10:D (3.7) BS02 8IJ ? GO:0000122 ... O35433 38698206
    578130 8t14:A (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578131 8t14:B (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578132 8t14:C (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578133 8t14:D (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578134 8t14:E (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578135 8t14:F (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578136 8t14:G (3.18) BS01 ADP ? GO:0005524 ... Q9CZP5 38821922
    578137 8t1b:A (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578138 8t1b:A (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578139 8t1b:A (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578140 8t1b:A (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578141 8t1b:A (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578142 8t1b:A (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578143 8t1b:A (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578144 8t1b:A (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578145 8t1b:A (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578146 8t1b:A (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578147 8t1b:A (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578148 8t1b:B (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578149 8t1b:B (3.0) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578150 8t1b:B (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578151 8t1b:B (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578152 8t1b:B (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578153 8t1b:B (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578154 8t1b:B (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578155 8t1b:B (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578156 8t1b:B (3.0) BS09 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578157 8t1b:B (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578158 8t1b:B (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578159 8t1b:B (3.0) BS12 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578160 8t1b:C (3.0) BS01 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578161 8t1b:C (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578162 8t1b:C (3.0) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578163 8t1b:C (3.0) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578164 8t1b:C (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578165 8t1b:C (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578166 8t1b:C (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578167 8t1b:C (3.0) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578168 8t1b:C (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578169 8t1b:C (3.0) BS10 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578170 8t1b:C (3.0) BS11 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578171 8t1b:D (3.0) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578172 8t1b:D (3.0) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578173 8t1b:D (3.0) BS03 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578174 8t1b:D (3.0) BS04 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578175 8t1b:D (3.0) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578176 8t1b:D (3.0) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578177 8t1b:D (3.0) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578178 8t1b:D (3.0) BS08 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578179 8t1b:D (3.0) BS09 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578180 8t1b:D (3.0) BS10 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578181 8t1b:D (3.0) BS11 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578182 8t1c:E (3.49) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 37353478
    578183 8t1d:A (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    578184 8t1d:B (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    578185 8t1d:C (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    578186 8t1d:D (3.35) BS01 XS9 ? GO:0000122 ... Q9HBA0 37353478
    578187 8t1e:A (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578188 8t1e:A (2.77) BS02 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578189 8t1e:A (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578190 8t1e:A (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578191 8t1e:A (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578192 8t1e:A (2.77) BS06 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578193 8t1e:A (2.77) BS07 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578194 8t1e:A (2.77) BS08 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578195 8t1e:B (2.77) BS01 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578196 8t1e:B (2.77) BS02 YJ0 ? GO:0000122 ... Q9HBA0 37353478
    578197 8t1e:B (2.77) BS03 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578198 8t1e:B (2.77) BS04 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578199 8t1e:B (2.77) BS05 9ZR ? GO:0000122 ... Q9HBA0 37353478
    578200 8t1e:B (2.77) BS06 9ZR ? GO:0000122 ... Q9HBA0 37353478
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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