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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    571801 8r5t:A (1.58) BS01 Y4E 3.5.2.6 GO:0008270 ... C7C422 38373290
    571802 8r5t:A (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    571803 8r5t:A (1.58) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    571804 8r5t:B (1.58) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    571805 8r5t:B (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 38373290
    571806 8r60:A (3.23) BS01 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571807 8r60:A (3.23) BS02 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571808 8r60:A (3.23) BS03 peptide 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571809 8r60:B (3.23) BS01 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    571810 8r60:B (3.23) BS02 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    571811 8r60:C (3.23) BS01 rna ? GO:0001172 ... Q3HM41 N/A
    571812 8r65:A (4.23) BS01 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571813 8r65:A (4.23) BS02 rna 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571814 8r65:A (4.23) BS03 peptide 3.1.-.- GO:0003723 ... Q3HM39 N/A
    571815 8r65:B (4.23) BS01 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    571816 8r65:B (4.23) BS02 rna 2.7.7.48 GO:0000166 ... Q3HM40 N/A
    571817 8r65:C (4.23) BS01 rna ? GO:0001172 ... Q3HM41 N/A
    571818 8r67:A (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38735475
    571819 8r67:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    571820 8r67:B (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    571821 8r67:B (2.2) BS02 CA ? GO:0000226 ... Q6B856 38735475
    571822 8r67:C (2.2) BS01 GTP 3.6.5.- GO:0000226 ... P81947 38735475
    571823 8r67:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38735475
    571824 8r67:D (2.2) BS01 GDP ? GO:0000226 ... Q6B856 38735475
    571825 8r67:D (2.2) BS02 Y74 ? GO:0000226 ... Q6B856 38735475
    571826 8r67:D (2.2) BS03 Y74 ? GO:0000226 ... Q6B856 38735475
    571827 8r6c:0 (2.2) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    571828 8r6c:1 (2.2) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    571829 8r6c:2 (2.2) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    571830 8r6c:3 (2.2) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    571831 8r6c:3 (2.2) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    571832 8r6c:4 (2.2) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    571833 8r6c:4 (2.2) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    571834 8r6c:B (2.2) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    571835 8r6c:C (2.2) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    571836 8r6c:D (2.2) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    571837 8r6c:E (2.2) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    571838 8r6c:F (2.2) BS01 rna N/A GO:0002181 ... P02358 38826346
    571839 8r6c:G (2.2) BS01 rna N/A GO:0000028 ... P02359 38826346
    571840 8r6c:H (2.2) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    571841 8r6c:I (2.2) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    571842 8r6c:I (2.2) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    571843 8r6c:J (2.2) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    571844 8r6c:K (2.2) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    571845 8r6c:L (2.2) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    571846 8r6c:M (2.2) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    571847 8r6c:M (2.2) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    571848 8r6c:N (2.2) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    571849 8r6c:O (2.2) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    571850 8r6c:O (2.2) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    571851 8r6c:P (2.2) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    571852 8r6c:Q (2.2) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    571853 8r6c:R (2.2) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    571854 8r6c:S (2.2) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    571855 8r6c:T (2.2) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    571856 8r6c:U (2.2) BS01 rna N/A GO:0000028 ... P68679 38826346
    571857 8r6c:c (2.2) BS01 rna N/A GO:0000027 ... P60422 38826346
    571858 8r6c:c (2.2) BS02 rna N/A GO:0000027 ... P60422 38826346
    571859 8r6c:d (2.2) BS01 rna N/A GO:0000027 ... P60438 38826346
    571860 8r6c:e (2.2) BS01 rna N/A GO:0001070 ... P60723 38826346
    571861 8r6c:f (2.2) BS01 rna N/A GO:0000027 ... P62399 38826346
    571862 8r6c:f (2.2) BS02 rna N/A GO:0000027 ... P62399 38826346
    571863 8r6c:f (2.2) BS03 rna N/A GO:0000027 ... P62399 38826346
    571864 8r6c:g (2.2) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    571865 8r6c:h (2.2) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    571866 8r6c:i (2.2) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    571867 8r6c:j (2.2) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    571868 8r6c:j (2.2) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    571869 8r6c:k (2.2) BS01 rna N/A GO:0002181 ... P02413 38826346
    571870 8r6c:l (2.2) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    571871 8r6c:l (2.2) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    571872 8r6c:l (2.2) BS03 rna N/A GO:0000027 ... P0ADY7 38826346
    571873 8r6c:m (2.2) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    571874 8r6c:n (2.2) BS01 rna N/A GO:0002181 ... P0C018 38826346
    571875 8r6c:n (2.2) BS02 rna N/A GO:0002181 ... P0C018 38826346
    571876 8r6c:o (2.2) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    571877 8r6c:o (2.2) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    571878 8r6c:p (2.2) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    571879 8r6c:q (2.2) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    571880 8r6c:r (2.2) BS01 rna N/A GO:0002181 ... P61175 38826346
    571881 8r6c:s (2.2) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    571882 8r6c:t (2.2) BS01 rna N/A GO:0000027 ... P60624 38826346
    571883 8r6c:u (2.2) BS01 rna N/A GO:0000027 ... P68919 38826346
    571884 8r6c:u (2.2) BS02 rna N/A GO:0000027 ... P68919 38826346
    571885 8r6c:v (2.2) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    571886 8r6c:v (2.2) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    571887 8r6c:v (2.2) BS03 rna N/A GO:0000027 ... P0A7L8 38826346
    571888 8r6c:w (2.2) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    571889 8r6c:w (2.2) BS02 rna N/A GO:0000027 ... P0A7M2 38826346
    571890 8r6c:x (2.2) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    571891 8r6c:y (2.2) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    571892 8r6c:y (2.2) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    571893 8r6c:z (2.2) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    571894 8r6f:B (2.34) BS01 rna ? GO:0003735 ... A0A3B6IU74 38139282
    571895 8r6f:C (2.34) BS01 rna ? GO:0003723 ... A0A3B6KRQ3 38139282
    571896 8r6f:E (2.34) BS01 rna ? GO:0003723 ... A0A1D5SLI4 38139282
    571897 8r6f:G (2.34) BS01 rna ? GO:0003735 ... W5C8N6 38139282
    571898 8r6f:H (2.34) BS01 rna ? GO:0003735 ... Q5I7K2 38139282
    571899 8r6f:I (2.34) BS01 rna ? GO:0000462 ... A0A1D5UKZ4 38139282
    571900 8r6f:J (2.34) BS01 rna ? GO:0003723 ... W5FPA7 38139282
    571901 8r6f:L (2.34) BS01 rna ? GO:0003735 ... W5BFB7 38139282
    571902 8r6f:N (2.34) BS01 rna ? GO:0003735 ... W5I035 38139282
    571903 8r6f:O (2.34) BS01 rna ? GO:0000028 ... A0A3B6SS17 38139282
    571904 8r6f:V (2.34) BS01 rna ? GO:0000447 ... A0A0C4BJ86 38139282
    571905 8r6f:W (2.34) BS01 rna ? GO:0003735 ... E2F3W4 38139282
    571906 8r6f:X (2.34) BS01 rna ? GO:0003735 ... W5FV77 38139282
    571907 8r6f:Y (2.34) BS01 rna ? GO:0003735 ... A0A3B6RHV8 38139282
    571908 8r6f:a (2.34) BS01 rna ? GO:0003729 ... A0A3B6KQB8 38139282
    571909 8r6f:a (2.34) BS02 ZN ? GO:0003729 ... A0A3B6KQB8 38139282
    571910 8r6f:b (2.34) BS01 rna ? GO:0000028 ... A0A341UET3 38139282
    571911 8r6f:e (2.34) BS01 rna ? GO:0003735 ... A0A3B6S9M7 38139282
    571912 8r6f:k (2.34) BS01 peptide ? GO:0000028 ... W5E2W7 38139282
    571913 8r6f:k (2.34) BS02 rna ? GO:0000028 ... W5E2W7 38139282
    571914 8r6s:E (2.49) BS01 ZN 2.7.7.6 GO:0000428 ... A0A6C0M829 38428394
    571915 8r6u:A (2.98) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571916 8r6u:A (2.98) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571917 8r6u:A (2.98) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571918 8r6u:A (2.98) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571919 8r6u:A (2.98) BS05 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571920 8r6w:A (3.35) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571921 8r6w:A (3.35) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571922 8r6w:A (3.35) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571923 8r6w:A (3.35) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571924 8r6y:A (3.4) BS01 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571925 8r6y:A (3.4) BS02 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571926 8r6y:A (3.4) BS03 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571927 8r6y:A (3.4) BS04 rna 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571928 8r6y:A (3.4) BS05 2KH 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571929 8r6y:A (3.4) BS06 MG 2.7.7.48 GO:0001172 ... I0DF35 38709882
    571930 8r74:A (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    571931 8r74:B (1.54) BS01 YBC ? GO:0002317 ... P09382 38804039
    571932 8r7g:A (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    571933 8r7g:B (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    571934 8r7g:C (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    571935 8r7g:D (2.09) BS01 YEE 2.7.11.30 GO:0004672 ... Q04771 32369358
    571936 8r7q:C (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    571937 8r7q:F (2.78) BS01 QI9 N/A GO:0005243 ... Q9UKL4 38890333
    571938 8r8f:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38355794
    571939 8r8g:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38355794
    571940 8r8h:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38355794
    571941 8r8i:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38355794
    571942 8r8j:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 38355794
    571943 8r8m:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    571944 8r8m:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    571945 8r8m:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    571946 8r8m:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    571947 8r8m:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    571948 8r8m:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    571949 8r8m:4 (2.4) BS02 ZN N/A GO:0002181 ... P0A7M9 38826346
    571950 8r8m:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    571951 8r8m:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    571952 8r8m:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    571953 8r8m:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    571954 8r8m:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    571955 8r8m:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    571956 8r8m:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    571957 8r8m:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    571958 8r8m:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    571959 8r8m:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    571960 8r8m:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    571961 8r8m:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    571962 8r8m:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    571963 8r8m:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    571964 8r8m:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    571965 8r8m:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    571966 8r8m:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    571967 8r8m:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    571968 8r8m:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    571969 8r8m:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    571970 8r8m:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    571971 8r8m:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    571972 8r8m:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    571973 8r8m:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    571974 8r8m:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    571975 8r8m:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    571976 8r8m:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    571977 8r8m:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    571978 8r8m:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    571979 8r8m:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    571980 8r8m:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    571981 8r8m:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    571982 8r8m:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    571983 8r8m:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    571984 8r8m:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    571985 8r8m:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    571986 8r8m:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    571987 8r8m:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    571988 8r8m:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    571989 8r8m:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    571990 8r8m:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    571991 8r8m:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    571992 8r8m:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    571993 8r8m:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    571994 8r8m:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    571995 8r8m:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    571996 8r8m:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    571997 8r8m:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    571998 8r8m:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    571999 8r8m:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    572000 8r8m:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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