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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    571401 8r0a:R (5.8) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    571402 8r0a:S (5.8) BS01 peptide ? GO:0000387 ... O43290 38778104
    571403 8r0a:S (5.8) BS02 rna ? GO:0000387 ... O43290 38778104
    571404 8r0b:21 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    571405 8r0b:22 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    571406 8r0b:23 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    571407 8r0b:2B (4.4) BS01 rna ? GO:0000398 ... P08579 38778104
    571408 8r0b:2f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    571409 8r0b:2g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    571410 8r0b:41 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    571411 8r0b:42 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    571412 8r0b:43 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    571413 8r0b:4e (4.4) BS01 rna ? GO:0000245 ... P62304 38778104
    571414 8r0b:4f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    571415 8r0b:4g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    571416 8r0b:51 (4.4) BS01 rna ? GO:0000243 ... P62314 38778104
    571417 8r0b:52 (4.4) BS01 rna ? GO:0000245 ... P62316 38778104
    571418 8r0b:53 (4.4) BS01 rna ? GO:0000243 ... P62318 38778104
    571419 8r0b:5b (4.4) BS01 rna ? GO:0000387 ... P14678 38778104
    571420 8r0b:5e (4.4) BS01 rna ? GO:0000245 ... P62304 38778104
    571421 8r0b:5f (4.4) BS01 rna ? GO:0000387 ... P62306 38778104
    571422 8r0b:5g (4.4) BS01 rna ? GO:0000245 ... P62308 38778104
    571423 8r0b:63 (4.4) BS01 rna ? GO:0000398 ... P62310 38778104
    571424 8r0b:68 (4.4) BS01 rna ? GO:0000398 ... O95777 38778104
    571425 8r0b:7 (4.4) BS01 rna ? GO:0000389 ... Q15459 38778104
    571426 8r0b:8 (4.4) BS01 rna ? GO:0000245 ... Q15428 38778104
    571427 8r0b:A (4.4) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    571428 8r0b:A (4.4) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    571429 8r0b:A (4.4) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    571430 8r0b:B1 (4.4) BS01 rna ? GO:0000245 ... O75533 38778104
    571431 8r0b:B1 (4.4) BS02 rna ? GO:0000245 ... O75533 38778104
    571432 8r0b:B2 (4.4) BS01 rna ? GO:0000398 ... Q13435 38778104
    571433 8r0b:B6 (4.4) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    571434 8r0b:D (4.4) BS01 rna ? GO:0000245 ... P83876 38778104
    571435 8r0b:D (4.4) BS02 rna ? GO:0000245 ... P83876 38778104
    571436 8r0b:E (4.4) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    571437 8r0b:J (4.4) BS01 rna ? GO:0000244 ... O43395 38778104
    571438 8r0b:L (4.4) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    571439 8r0b:L (4.4) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    571440 8r0b:M (4.4) BS01 rna ? GO:0000398 ... P55769 38778104
    571441 8r0b:N (4.4) BS01 rna ? GO:0000244 ... O94906 38778104
    571442 8r0i:A (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    571443 8r0i:B (1.51) BS01 XG7 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    571444 8r0j:C (2.4) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    571445 8r10:A (2.2) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    571446 8r10:A (2.2) BS02 XGQ 2.7.11.1 GO:0004672 ... P11309 38631036
    571447 8r18:A (1.89) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    571448 8r18:A (1.89) BS02 XGK 2.7.11.1 GO:0004672 ... P11309 38631036
    571449 8r1a:A (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571450 8r1a:A (26.8) BS02 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571451 8r1a:B (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571452 8r1a:B (26.8) BS02 MG 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571453 8r1a:B (26.8) BS03 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571454 8r1a:C (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571455 8r1a:C (26.8) BS02 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571456 8r1a:D (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571457 8r1a:D (26.8) BS02 MG 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571458 8r1a:D (26.8) BS03 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571459 8r1a:E (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571460 8r1a:E (26.8) BS02 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571461 8r1a:F (26.8) BS01 AF3 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571462 8r1a:F (26.8) BS02 MG 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571463 8r1a:F (26.8) BS03 GDP 3.6.1.-
    3.6.5.-
    GO:0000139 ... P32455 38267655
    571464 8r1f:B (3.67) BS01 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571465 8r1f:B (3.67) BS02 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571466 8r1f:C (3.67) BS01 ZN ? GO:0000122 ... P04637 N/A
    571467 8r1g:B (3.99) BS01 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571468 8r1g:B (3.99) BS02 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571469 8r1g:C (3.99) BS01 ZN ? GO:0000122 ... P04637 N/A
    571470 8r1g:E (3.99) BS01 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571471 8r1g:E (3.99) BS02 ZN ? GO:0000794 ... P03126
    Q12306
    N/A
    571472 8r1g:F (3.99) BS01 ZN ? GO:0000122 ... P04637 N/A
    571473 8r1i:A (1.46) BS01 SBR 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 37974542
    571474 8r1i:A (1.46) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 37974542
    571475 8r1n:A (2.21) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    571476 8r1n:A (2.21) BS02 XIT 2.7.11.1 GO:0004672 ... P11309 38631036
    571477 8r1p:A (2.45) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    571478 8r1p:A (2.45) BS02 XIP 2.7.11.1 GO:0004672 ... P11309 38631036
    571479 8r1t:A (2.0) BS01 peptide 2.7.11.1 GO:0004672 ... P11309 38631036
    571480 8r1t:A (2.0) BS02 XIJ 2.7.11.1 GO:0004672 ... P11309 38631036
    571481 8r1v:A (2.087) BS01 XJR 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    571482 8r1v:B (2.087) BS01 XJR 2.3.1.179 GO:0004315 ... G3XDA2 38665834
    571483 8r22:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    571484 8r23:C (3.2) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    571485 8r23:C (3.2) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    571486 8r2d:C (3.9) BS01 ZN N/A GO:0004521 ... Q5TA45 39032489
    571487 8r2d:C (3.9) BS02 ZN N/A GO:0004521 ... Q5TA45 39032489
    571488 8r2g:A (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571489 8r2g:B (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571490 8r2g:C (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571491 8r2g:D (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571492 8r2g:E (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571493 8r2g:G (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571494 8r2g:H (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    571495 8r2i:A (2.9) BS01 peptide 1.10.3.9 GO:0005506 ... P07753 38322422
    571496 8r2i:A (2.9) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 38322422
    571497 8r2i:A (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571498 8r2i:A (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571499 8r2i:A (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    571500 8r2i:A (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571501 8r2i:A (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571502 8r2i:A (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571503 8r2i:A (2.9) BS09 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    571504 8r2i:A (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    571505 8r2i:B (2.9) BS01 CLA ? GO:0009507 ... P37255 38322422
    571506 8r2i:B (2.9) BS02 CLA ? GO:0009507 ... P37255 38322422
    571507 8r2i:B (2.9) BS03 CLA ? GO:0009507 ... P37255 38322422
    571508 8r2i:B (2.9) BS04 CLA ? GO:0009507 ... P37255 38322422
    571509 8r2i:B (2.9) BS05 CLA ? GO:0009507 ... P37255 38322422
    571510 8r2i:B (2.9) BS06 CLA ? GO:0009507 ... P37255 38322422
    571511 8r2i:B (2.9) BS07 CLA ? GO:0009507 ... P37255 38322422
    571512 8r2i:B (2.9) BS08 CLA ? GO:0009507 ... P37255 38322422
    571513 8r2i:B (2.9) BS09 CLA ? GO:0009507 ... P37255 38322422
    571514 8r2i:B (2.9) BS10 CLA ? GO:0009507 ... P37255 38322422
    571515 8r2i:B (2.9) BS11 CLA ? GO:0009507 ... P37255 38322422
    571516 8r2i:B (2.9) BS12 CLA ? GO:0009507 ... P37255 38322422
    571517 8r2i:B (2.9) BS13 CLA ? GO:0009507 ... P37255 38322422
    571518 8r2i:B (2.9) BS14 CLA ? GO:0009507 ... P37255 38322422
    571519 8r2i:B (2.9) BS15 CLA ? GO:0009507 ... P37255 38322422
    571520 8r2i:B (2.9) BS16 CLA ? GO:0009507 ... P37255 38322422
    571521 8r2i:C (2.9) BS01 peptide ? GO:0005737 ... P10898 38322422
    571522 8r2i:C (2.9) BS02 CLA ? GO:0005737 ... P10898 38322422
    571523 8r2i:C (2.9) BS03 CLA ? GO:0005737 ... P10898 38322422
    571524 8r2i:C (2.9) BS04 CLA ? GO:0005737 ... P10898 38322422
    571525 8r2i:C (2.9) BS05 CLA ? GO:0005737 ... P10898 38322422
    571526 8r2i:C (2.9) BS06 CLA ? GO:0005737 ... P10898 38322422
    571527 8r2i:C (2.9) BS07 CLA ? GO:0005737 ... P10898 38322422
    571528 8r2i:C (2.9) BS08 CLA ? GO:0005737 ... P10898 38322422
    571529 8r2i:C (2.9) BS09 CLA ? GO:0005737 ... P10898 38322422
    571530 8r2i:C (2.9) BS10 CLA ? GO:0005737 ... P10898 38322422
    571531 8r2i:C (2.9) BS11 CLA ? GO:0005737 ... P10898 38322422
    571532 8r2i:C (2.9) BS12 CLA ? GO:0005737 ... P10898 38322422
    571533 8r2i:C (2.9) BS13 CLA ? GO:0005737 ... P10898 38322422
    571534 8r2i:C (2.9) BS14 CLA ? GO:0005737 ... P10898 38322422
    571535 8r2i:D (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 38322422
    571536 8r2i:D (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571537 8r2i:D (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571538 8r2i:D (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    571539 8r2i:D (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571540 8r2i:D (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571541 8r2i:D (2.9) BS07 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    571542 8r2i:D (2.9) BS08 BCT 1.10.3.9 GO:0005506 ... P06007 38322422
    571543 8r2i:D (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571544 8r2i:D (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    571545 8r2i:E (2.9) BS01 HEM ? GO:0005506 ... P48268 38322422
    571546 8r2i:F (2.9) BS01 HEM ? GO:0009523 ... Q08363 38322422
    571547 8r2i:H (2.9) BS01 CLA ? GO:0009523 ... P22666 38322422
    571548 8r2i:H (2.9) BS02 CLA ? GO:0009523 ... P22666 38322422
    571549 8r2i:H (2.9) BS03 CLA ? GO:0009523 ... P22666 38322422
    571550 8r2i:H (2.9) BS04 CLA ? GO:0009523 ... P22666 38322422
    571551 8r2i:H (2.9) BS05 CLA ? GO:0009523 ... P22666 38322422
    571552 8r2i:K (2.9) BS01 CLA ? GO:0009523 ... P18263 38322422
    571553 8r34:A (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    571554 8r34:B (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    571555 8r3k:A (3.43) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    571556 8r3k:A (3.43) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    571557 8r3k:B (3.43) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571558 8r3k:B (3.43) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571559 8r3k:B (3.43) BS03 POP 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571560 8r3k:B (3.43) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571561 8r3k:B (3.43) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571562 8r3k:C (3.43) BS01 rna ? GO:0001172 ... X5F427 38316757
    571563 8r3k:C (3.43) BS02 rna ? GO:0001172 ... X5F427 38316757
    571564 8r3l:A (3.25) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    571565 8r3l:A (3.25) BS02 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    571566 8r3l:A (3.25) BS03 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    571567 8r3l:B (3.25) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571568 8r3l:B (3.25) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    571569 8r3l:C (3.25) BS01 rna ? GO:0001172 ... X5F427 38316757
    571570 8r3o:A (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571571 8r3o:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    571572 8r3o:A (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571573 8r3o:B (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571574 8r3o:B (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571575 8r3o:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    571576 8r3o:C (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571577 8r3o:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    571578 8r3o:C (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571579 8r3o:D (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571580 8r3o:D (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    571581 8r3o:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    571582 8r3p:A (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571583 8r3p:A (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571584 8r3p:A (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571585 8r3p:B (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571586 8r3p:B (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571587 8r3p:B (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571588 8r3p:C (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571589 8r3p:C (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571590 8r3p:C (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571591 8r3p:D (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571592 8r3p:D (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571593 8r3p:D (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    571594 8r3q:A (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571595 8r3q:A (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571596 8r3q:A (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571597 8r3q:B (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571598 8r3q:B (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571599 8r3q:B (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    571600 8r3q:C (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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