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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    571201 8qzs:D (4.1) BS01 rna ? GO:0000245 ... P83876 38778104
    571202 8qzs:D (4.1) BS02 rna ? GO:0000245 ... P83876 38778104
    571203 8qzs:F (4.1) BS01 rna ? GO:0000375 ... O43172 38778104
    571204 8qzs:J (4.1) BS01 rna ? GO:0000244 ... O43395 38778104
    571205 8qzs:J (4.1) BS02 rna ? GO:0000244 ... O43395 38778104
    571206 8qzs:L (4.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    571207 8qzs:L (4.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    571208 8qzs:M (4.1) BS01 rna ? GO:0000398 ... P55769 38778104
    571209 8qzs:N (4.1) BS01 rna ? GO:0000244 ... O94906 38778104
    571210 8qzs:X (4.1) BS01 rna ? GO:0000398 ... O75554 38778104
    571211 8qzs:X (4.1) BS02 rna ? GO:0000398 ... O75554 38778104
    571212 8qzs:r (4.1) BS01 rna ? GO:0000398 ... Q96NC0 38778104
    571213 8qzw:A (1.68) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    571214 8qzx:A (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    571215 8qzx:A (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    571216 8qzx:B (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    571217 8qzx:B (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    571218 8qzx:C (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    571219 8qzx:C (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    571220 8qzx:D (3.01) BS01 NAD N/A GO:0005737 ... F1AQF9 38923395
    571221 8qzx:D (3.01) BS02 NAD N/A GO:0005737 ... F1AQF9 38923395
    571222 8qzz:A (3.35) BS01 peptide 3.6.5.3 GO:0000049 ... P41091 38547060
    571223 8qzz:A (3.35) BS02 GNP 3.6.5.3 GO:0000049 ... P41091 38547060
    571224 8r02:B (2.5) BS01 XFZ ? GO:0005515 ... Q9UBQ0 38487369
    571225 8r02:D (2.5) BS01 XFZ ? GO:0015031 ... Q96QK1 38487369
    571226 8r03:A (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571227 8r03:B (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571228 8r03:C (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571229 8r03:D (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571230 8r03:E (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571231 8r03:F (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571232 8r03:G (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571233 8r03:H (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571234 8r03:I (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571235 8r03:J (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571236 8r03:K (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571237 8r03:L (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571238 8r03:M (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571239 8r03:N (2.0) BS01 VSZ 3.4.21.92 GO:0004176 ... Q2G036 38029352
    571240 8r04:A (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571241 8r04:B (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571242 8r04:C (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571243 8r04:D (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571244 8r04:E (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571245 8r04:F (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571246 8r04:G (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571247 8r04:H (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571248 8r04:I (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571249 8r04:J (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571250 8r04:K (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571251 8r04:L (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571252 8r04:M (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571253 8r04:N (2.1) BS01 VSZ 3.4.21.92 GO:0004176 ... O67357 38029352
    571254 8r05:A (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571255 8r05:B (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571256 8r05:C (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571257 8r05:D (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571258 8r05:E (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571259 8r05:F (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571260 8r05:G (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571261 8r05:H (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571262 8r05:I (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571263 8r05:J (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571264 8r05:K (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571265 8r05:L (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571266 8r05:M (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571267 8r05:N (2.5) BS01 VSZ 3.4.21.92 GO:0004176 ... Q7N0L3 38029352
    571268 8r06:A (1.7) BS01 PO8 3.2.1.45 GO:0004348 ... F6BL85 28937220
    571269 8r06:A (1.7) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 28937220
    571270 8r08:11 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    571271 8r08:12 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    571272 8r08:13 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    571273 8r08:1K (6.1) BS01 rna ? GO:0000398 ... P08621 38778104
    571274 8r08:1b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    571275 8r08:1e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    571276 8r08:1f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    571277 8r08:1g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    571278 8r08:21 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    571279 8r08:22 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    571280 8r08:23 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    571281 8r08:2B (6.1) BS01 rna ? GO:0000398 ... P08579 38778104
    571282 8r08:2e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    571283 8r08:2f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    571284 8r08:2g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    571285 8r08:41 (6.1) BS01 peptide ? GO:0000243 ... P62314 38778104
    571286 8r08:41 (6.1) BS02 rna ? GO:0000243 ... P62314 38778104
    571287 8r08:42 (6.1) BS01 peptide ? GO:0000245 ... P62316 38778104
    571288 8r08:42 (6.1) BS02 rna ? GO:0000245 ... P62316 38778104
    571289 8r08:43 (6.1) BS01 rna ? GO:0000243 ... P62318 38778104
    571290 8r08:4b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    571291 8r08:4e (6.1) BS01 rna ? GO:0000245 ... P62304 38778104
    571292 8r08:4f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    571293 8r08:4g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    571294 8r08:51 (6.1) BS01 rna ? GO:0000243 ... P62314 38778104
    571295 8r08:52 (6.1) BS01 rna ? GO:0000245 ... P62316 38778104
    571296 8r08:5b (6.1) BS01 rna ? GO:0000387 ... P14678 38778104
    571297 8r08:5f (6.1) BS01 rna ? GO:0000387 ... P62306 38778104
    571298 8r08:5g (6.1) BS01 rna ? GO:0000245 ... P62308 38778104
    571299 8r08:63 (6.1) BS01 rna ? GO:0000398 ... P62310 38778104
    571300 8r08:68 (6.1) BS01 rna ? GO:0000398 ... O95777 38778104
    571301 8r08:9 (6.1) BS01 rna ? GO:0000375 ... Q12874 38778104
    571302 8r08:A (6.1) BS01 peptide ? GO:0000244 ... Q6P2Q9 38778104
    571303 8r08:A (6.1) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    571304 8r08:B1 (6.1) BS01 rna ? GO:0000245 ... O75533 38778104
    571305 8r08:B1 (6.1) BS02 rna ? GO:0000245 ... O75533 38778104
    571306 8r08:B2 (6.1) BS01 rna ? GO:0000398 ... Q13435 38778104
    571307 8r08:B6 (6.1) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    571308 8r08:BP (6.1) BS01 rna ? GO:0000398 ... Q7RTV0 38778104
    571309 8r08:G (6.1) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38778104
    571310 8r08:G (6.1) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38778104
    571311 8r08:J (6.1) BS01 rna ? GO:0000244 ... O43395 38778104
    571312 8r08:L (6.1) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    571313 8r08:L (6.1) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    571314 8r08:M (6.1) BS01 rna ? GO:0000398 ... P55769 38778104
    571315 8r08:M (6.1) BS02 rna ? GO:0000398 ... P55769 38778104
    571316 8r08:R (6.1) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    571317 8r08:R (6.1) BS02 rna ? GO:0000398 ... Q9BTD8 38778104
    571318 8r08:S (6.1) BS01 peptide ? GO:0000387 ... O43290 38778104
    571319 8r08:S (6.1) BS02 rna ? GO:0000387 ... O43290 38778104
    571320 8r09:21 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    571321 8r09:22 (4.3) BS01 rna ? GO:0000245 ... P62316 38778104
    571322 8r09:23 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    571323 8r09:2B (4.3) BS01 rna ? GO:0000398 ... P08579 38778104
    571324 8r09:2e (4.3) BS01 rna ? GO:0000245 ... P62304 38778104
    571325 8r09:2f (4.3) BS01 rna ? GO:0000387 ... P62306 38778104
    571326 8r09:2g (4.3) BS01 rna ? GO:0000245 ... P62308 38778104
    571327 8r09:41 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    571328 8r09:42 (4.3) BS01 rna ? GO:0000245 ... P62316 38778104
    571329 8r09:43 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    571330 8r09:4e (4.3) BS01 rna ? GO:0000245 ... P62304 38778104
    571331 8r09:4f (4.3) BS01 rna ? GO:0000387 ... P62306 38778104
    571332 8r09:4g (4.3) BS01 rna ? GO:0000245 ... P62308 38778104
    571333 8r09:51 (4.3) BS01 rna ? GO:0000243 ... P62314 38778104
    571334 8r09:52 (4.3) BS01 rna ? GO:0000245 ... P62316 38778104
    571335 8r09:53 (4.3) BS01 rna ? GO:0000243 ... P62318 38778104
    571336 8r09:5b (4.3) BS01 rna ? GO:0000387 ... P14678 38778104
    571337 8r09:5e (4.3) BS01 rna ? GO:0000245 ... P62304 38778104
    571338 8r09:5f (4.3) BS01 rna ? GO:0000387 ... P62306 38778104
    571339 8r09:5g (4.3) BS01 rna ? GO:0000245 ... P62308 38778104
    571340 8r09:63 (4.3) BS01 rna ? GO:0000398 ... P62310 38778104
    571341 8r09:68 (4.3) BS01 rna ? GO:0000398 ... O95777 38778104
    571342 8r09:7 (4.3) BS01 rna ? GO:0000389 ... Q15459 38778104
    571343 8r09:7 (4.3) BS02 rna ? GO:0000389 ... Q15459 38778104
    571344 8r09:A (4.3) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    571345 8r09:A (4.3) BS02 rna ? GO:0000244 ... Q6P2Q9 38778104
    571346 8r09:A (4.3) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    571347 8r09:B1 (4.3) BS01 rna ? GO:0000245 ... O75533 38778104
    571348 8r09:B1 (4.3) BS02 rna ? GO:0000245 ... O75533 38778104
    571349 8r09:B6 (4.3) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    571350 8r09:D (4.3) BS01 rna ? GO:0000245 ... P83876 38778104
    571351 8r09:D (4.3) BS02 rna ? GO:0000245 ... P83876 38778104
    571352 8r09:E (4.3) BS01 rna ? GO:0000375 ... Q96DI7 38778104
    571353 8r09:J (4.3) BS01 rna ? GO:0000244 ... O43395 38778104
    571354 8r09:L (4.3) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    571355 8r09:L (4.3) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    571356 8r09:M (4.3) BS01 rna ? GO:0000398 ... P55769 38778104
    571357 8r09:N (4.3) BS01 rna ? GO:0000244 ... O94906 38778104
    571358 8r09:N (4.3) BS02 rna ? GO:0000244 ... O94906 38778104
    571359 8r0a:21 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    571360 8r0a:22 (5.8) BS01 rna ? GO:0000245 ... P62316 38778104
    571361 8r0a:23 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    571362 8r0a:2B (5.8) BS01 rna ? GO:0000398 ... P08579 38778104
    571363 8r0a:2e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    571364 8r0a:2f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    571365 8r0a:2g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    571366 8r0a:41 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    571367 8r0a:42 (5.8) BS01 peptide ? GO:0000245 ... P62316 38778104
    571368 8r0a:42 (5.8) BS02 rna ? GO:0000245 ... P62316 38778104
    571369 8r0a:43 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    571370 8r0a:4e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    571371 8r0a:4f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    571372 8r0a:4g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    571373 8r0a:51 (5.8) BS01 rna ? GO:0000243 ... P62314 38778104
    571374 8r0a:52 (5.8) BS01 rna ? GO:0000245 ... P62316 38778104
    571375 8r0a:53 (5.8) BS01 rna ? GO:0000243 ... P62318 38778104
    571376 8r0a:5b (5.8) BS01 rna ? GO:0000387 ... P14678 38778104
    571377 8r0a:5e (5.8) BS01 rna ? GO:0000245 ... P62304 38778104
    571378 8r0a:5f (5.8) BS01 rna ? GO:0000387 ... P62306 38778104
    571379 8r0a:5g (5.8) BS01 rna ? GO:0000245 ... P62308 38778104
    571380 8r0a:63 (5.8) BS01 rna ? GO:0000398 ... P62310 38778104
    571381 8r0a:68 (5.8) BS01 rna ? GO:0000398 ... O95777 38778104
    571382 8r0a:8 (5.8) BS01 rna ? GO:0000245 ... Q15428 38778104
    571383 8r0a:A (5.8) BS01 rna ? GO:0000244 ... Q6P2Q9 38778104
    571384 8r0a:A (5.8) BS02 peptide ? GO:0000244 ... Q6P2Q9 38778104
    571385 8r0a:A (5.8) BS03 rna ? GO:0000244 ... Q6P2Q9 38778104
    571386 8r0a:A (5.8) BS04 rna ? GO:0000244 ... Q6P2Q9 38778104
    571387 8r0a:B1 (5.8) BS01 rna ? GO:0000245 ... O75533 38778104
    571388 8r0a:B1 (5.8) BS02 rna ? GO:0000245 ... O75533 38778104
    571389 8r0a:B2 (5.8) BS01 rna ? GO:0000398 ... Q13435 38778104
    571390 8r0a:B6 (5.8) BS01 rna ? GO:0000398 ... Q9Y3B4 38778104
    571391 8r0a:D (5.8) BS01 rna ? GO:0000245 ... P83876 38778104
    571392 8r0a:D (5.8) BS02 rna ? GO:0000245 ... P83876 38778104
    571393 8r0a:D (5.8) BS03 rna ? GO:0000245 ... P83876 38778104
    571394 8r0a:J (5.8) BS01 rna ? GO:0000244 ... O43395 38778104
    571395 8r0a:J (5.8) BS02 rna ? GO:0000244 ... O43395 38778104
    571396 8r0a:L (5.8) BS01 rna ? GO:0000244 ... Q8WWY3 38778104
    571397 8r0a:L (5.8) BS02 rna ? GO:0000244 ... Q8WWY3 38778104
    571398 8r0a:M (5.8) BS01 rna ? GO:0000398 ... P55769 38778104
    571399 8r0a:M (5.8) BS02 rna ? GO:0000398 ... P55769 38778104
    571400 8r0a:R (5.8) BS01 rna ? GO:0000398 ... Q9BTD8 38778104
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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