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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    570601 8qsl:A (2.81) BS04 Y01 ? GO:0005290 ... Q8N697 N/A
    570602 8qsl:A (2.81) BS05 Y01 ? GO:0005290 ... Q8N697 N/A
    570603 8qsl:A (2.81) BS06 Y01 ? GO:0005290 ... Q8N697 N/A
    570604 8qsl:A (2.81) BS07 Y01 ? GO:0005290 ... Q8N697 N/A
    570605 8qsl:C (2.81) BS01 Y01 ? GO:0005290 ... Q8N697 N/A
    570606 8qsl:C (2.81) BS02 Y01 ? GO:0005290 ... Q8N697 N/A
    570607 8qsl:C (2.81) BS03 Y01 ? GO:0005290 ... Q8N697 N/A
    570608 8qsl:C (2.81) BS04 Y01 ? GO:0005290 ... Q8N697 N/A
    570609 8qsl:C (2.81) BS05 Y01 ? GO:0005290 ... Q8N697 N/A
    570610 8qsl:C (2.81) BS06 Y01 ? GO:0005290 ... Q8N697 N/A
    570611 8qsl:C (2.81) BS07 Y01 ? GO:0005290 ... Q8N697 N/A
    570612 8qso:A (2.106) BS01 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 38306405
    570613 8qso:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    Q07820    		 38306405
    570614 8qso:A (2.106) BS03 WXW ? GO:0005515 ... P0AEX9
    Q07820    		 38306405
    570615 8qt6:A (2.29) BS01 FAD N/A GO:0016020 ... Q8CZ28 39039317
    570616 8qt6:A (2.29) BS02 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570617 8qt6:A (2.29) BS03 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570618 8qt7:A (2.2) BS01 NDP N/A GO:0016020 ... Q8CZ28 39039317
    570619 8qt7:A (2.2) BS02 FAD N/A GO:0016020 ... Q8CZ28 39039317
    570620 8qt7:A (2.2) BS03 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570621 8qt7:A (2.2) BS04 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570622 8qt9:A (2.36) BS01 FAD N/A GO:0016020 ... Q8CZ28 39039317
    570623 8qt9:A (2.36) BS02 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570624 8qt9:A (2.36) BS03 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570625 8qt9:A (2.36) BS04 NAI N/A GO:0016020 ... Q8CZ28 39039317
    570626 8qta:A (2.64) BS01 NDP N/A GO:0016020 ... Q8CZ28 39039317
    570627 8qta:A (2.64) BS02 FAD N/A GO:0016020 ... Q8CZ28 39039317
    570628 8qta:A (2.64) BS03 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570629 8qta:A (2.64) BS04 HEM N/A GO:0016020 ... Q8CZ28 39039317
    570630 8qtc:A (3.5) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570631 8qtc:A (3.5) BS02 CO ? GO:0000325 ... Q01525 38783418
    570632 8qtf:A (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570633 8qtf:B (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570634 8qtf:C (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570635 8qtf:D (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570636 8qtf:D (1.9) BS02 peptide ? GO:0000325 ... Q01525 38783418
    570637 8qtf:E (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570638 8qtf:F (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570639 8qtf:G (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570640 8qtf:H (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570641 8qtf:I (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570642 8qtf:J (1.9) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570643 8qtl:A (1.85) BS01 WSP ? GO:0004888 ... Q8WSF8 38667766
    570644 8qtl:B (1.85) BS01 WSP ? GO:0004888 ... Q8WSF8 38667766
    570645 8qtl:C (1.85) BS01 WSP ? GO:0004888 ... Q8WSF8 38667766
    570646 8qtl:D (1.85) BS01 WSP ? GO:0004888 ... Q8WSF8 38667766
    570647 8qtl:E (1.85) BS01 WSP ? GO:0004888 ... Q8WSF8 38667766
    570648 8qto:A (2.4) BS01 SF4 ? GO:0003677 ... Q70ET4 N/A
    570649 8qtt:A (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570650 8qtt:B (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570651 8qtt:C (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570652 8qtt:D (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570653 8qtt:E (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570654 8qtt:F (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570655 8qtt:G (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570656 8qtt:H (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570657 8qtt:I (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570658 8qtt:J (2.35) BS01 peptide ? GO:0000325 ... Q01525 38783418
    570659 8qu1:0 (2.74) BS01 rna N/A GO:0003723 ... Q9BYC8 38969660
    570660 8qu1:1 (2.74) BS01 rna N/A GO:0005739 ... O75394 38969660
    570661 8qu1:2 (2.74) BS01 rna N/A GO:0003735 ... Q9BQ48 38969660
    570662 8qu1:3 (2.74) BS01 rna N/A GO:0003735 ... Q9NZE8 38969660
    570663 8qu1:5 (2.74) BS01 rna N/A GO:0003723 ... Q9BZE1 38969660
    570664 8qu1:6 (2.74) BS01 rna N/A GO:0005515 ... Q96DV4 38969660
    570665 8qu1:6 (2.74) BS02 rna N/A GO:0005515 ... Q96DV4 38969660
    570666 8qu1:D (2.74) BS01 rna N/A GO:0003723 ... Q5T653 38969660
    570667 8qu1:E (2.74) BS01 rna N/A GO:0003723 ... P09001 38969660
    570668 8qu1:F (2.74) BS01 rna N/A GO:0003723 ... Q9BYD3 38969660
    570669 8qu1:H (2.74) BS01 rna N/A GO:0003723 ... Q9BYD2 38969660
    570670 8qu1:I (2.74) BS01 rna N/A GO:0003723 ... Q7Z7H8 38969660
    570671 8qu1:J (2.74) BS01 rna N/A GO:0003723 ... Q9Y3B7 38969660
    570672 8qu1:K (2.74) BS01 rna N/A GO:0003723 ... Q9BYD1 38969660
    570673 8qu1:L (2.74) BS01 rna N/A GO:0003723 ... Q6P1L8 38969660
    570674 8qu1:M (2.74) BS01 rna N/A GO:0003723 ... Q9P015 38969660
    570675 8qu1:N (2.74) BS01 rna N/A GO:0003735 ... Q9NX20 38969660
    570676 8qu1:O (2.74) BS01 rna N/A GO:0003735 ... Q9NRX2 38969660
    570677 8qu1:P (2.74) BS01 rna N/A GO:0003723 ... Q9H0U6 38969660
    570678 8qu1:P (2.74) BS02 rna N/A GO:0003723 ... Q9H0U6 38969660
    570679 8qu1:Q (2.74) BS01 rna N/A GO:0003735 ... P49406 38969660
    570680 8qu1:R (2.74) BS01 rna N/A GO:0003723 ... Q9BYC9 38969660
    570681 8qu1:S (2.74) BS01 rna N/A GO:0003723 ... Q7Z2W9 38969660
    570682 8qu1:T (2.74) BS01 rna N/A GO:0003723 ... Q9NWU5 38969660
    570683 8qu1:U (2.74) BS01 rna N/A GO:0001650 ... Q16540 38969660
    570684 8qu1:V (2.74) BS01 rna N/A GO:0005739 ... Q96A35 38969660
    570685 8qu1:W (2.74) BS01 rna N/A GO:0003723 ... Q9P0M9 38969660
    570686 8qu1:X (2.74) BS01 rna N/A GO:0003723 ... Q13084 38969660
    570687 8qu1:Y (2.74) BS01 rna N/A GO:0003674 ... Q9HD33 38969660
    570688 8qu1:Z (2.74) BS01 rna N/A GO:0005739 ... Q8TCC3 38969660
    570689 8qu2:B (1.45) BS01 peptide ? GO:0001228 ... P25208 38470946
    570690 8qu3:B (1.41) BS01 peptide ? GO:0001228 ... P25208 38470946
    570691 8qu4:B (1.38) BS01 peptide ? GO:0001228 ... P25208 38470946
    570692 8qu5:0 (2.42) BS01 rna N/A GO:0003723 ... Q9BYC8 38969660
    570693 8qu5:0 (2.42) BS02 ZN N/A GO:0003723 ... Q9BYC8 38969660
    570694 8qu5:1 (2.42) BS01 rna N/A GO:0005739 ... O75394 38969660
    570695 8qu5:2 (2.42) BS01 rna N/A GO:0003735 ... Q9BQ48 38969660
    570696 8qu5:3 (2.42) BS01 rna N/A GO:0003735 ... Q9NZE8 38969660
    570697 8qu5:5 (2.42) BS01 rna N/A GO:0003723 ... Q9BZE1 38969660
    570698 8qu5:6 (2.42) BS01 rna N/A GO:0005515 ... Q96DV4 38969660
    570699 8qu5:6 (2.42) BS02 rna N/A GO:0005515 ... Q96DV4 38969660
    570700 8qu5:8 (2.42) BS01 rna N/A GO:0003723 ... Q9NQ50 38969660
    570701 8qu5:9 (2.42) BS01 rna N/A GO:0003723 ... Q8IXM3 38969660
    570702 8qu5:D (2.42) BS01 rna N/A GO:0003723 ... Q5T653 38969660
    570703 8qu5:E (2.42) BS01 rna N/A GO:0003723 ... P09001 38969660
    570704 8qu5:F (2.42) BS01 rna N/A GO:0003723 ... Q9BYD3 38969660
    570705 8qu5:H (2.42) BS01 rna N/A GO:0003723 ... Q9BYD2 38969660
    570706 8qu5:I (2.42) BS01 peptide N/A GO:0003723 ... Q7Z7H8 38969660
    570707 8qu5:I (2.42) BS02 rna N/A GO:0003723 ... Q7Z7H8 38969660
    570708 8qu5:J (2.42) BS01 rna N/A GO:0003723 ... Q9Y3B7 38969660
    570709 8qu5:K (2.42) BS01 rna N/A GO:0003723 ... Q9BYD1 38969660
    570710 8qu5:L (2.42) BS01 rna N/A GO:0003723 ... Q6P1L8 38969660
    570711 8qu5:M (2.42) BS01 rna N/A GO:0003723 ... Q9P015 38969660
    570712 8qu5:N (2.42) BS01 peptide N/A GO:0003735 ... Q9NX20 38969660
    570713 8qu5:N (2.42) BS02 rna N/A GO:0003735 ... Q9NX20 38969660
    570714 8qu5:O (2.42) BS01 rna N/A GO:0003735 ... Q9NRX2 38969660
    570715 8qu5:P (2.42) BS01 rna N/A GO:0003723 ... Q9H0U6 38969660
    570716 8qu5:P (2.42) BS02 rna N/A GO:0003723 ... Q9H0U6 38969660
    570717 8qu5:Q (2.42) BS01 rna N/A GO:0003735 ... P49406 38969660
    570718 8qu5:R (2.42) BS01 rna N/A GO:0003723 ... Q9BYC9 38969660
    570719 8qu5:S (2.42) BS01 rna N/A GO:0003723 ... Q7Z2W9 38969660
    570720 8qu5:T (2.42) BS01 rna N/A GO:0003723 ... Q9NWU5 38969660
    570721 8qu5:U (2.42) BS01 rna N/A GO:0001650 ... Q16540 38969660
    570722 8qu5:V (2.42) BS01 rna N/A GO:0005739 ... Q96A35 38969660
    570723 8qu5:W (2.42) BS01 rna N/A GO:0003723 ... Q9P0M9 38969660
    570724 8qu5:X (2.42) BS01 rna N/A GO:0003723 ... Q13084 38969660
    570725 8qu5:Y (2.42) BS01 rna N/A GO:0003674 ... Q9HD33 38969660
    570726 8qu5:Z (2.42) BS01 rna N/A GO:0005739 ... Q8TCC3 38969660
    570727 8qu5:a (2.42) BS01 rna N/A GO:0003723 ... Q9Y6G3 38969660
    570728 8qu5:b (2.42) BS01 rna N/A GO:0003723 ... Q8N983 38969660
    570729 8qu5:c (2.42) BS01 rna N/A GO:0003723 ... Q9H9J2 38969660
    570730 8qu5:d (2.42) BS01 rna N/A GO:0003723 ... Q9BRJ2 38969660
    570731 8qu5:f (2.42) BS01 rna N/A GO:0005515 ... Q96GC5 38969660
    570732 8qu5:f (2.42) BS02 rna N/A GO:0005515 ... Q96GC5 38969660
    570733 8qu5:g (2.42) BS01 rna N/A GO:0003735 ... Q13405 38969660
    570734 8qu5:i (2.42) BS01 rna N/A GO:0003735 ... Q4U2R6 38969660
    570735 8qu5:j (2.42) BS01 rna N/A GO:0003735 ... Q86TS9 38969660
    570736 8qu5:o (2.42) BS01 rna N/A GO:0003735 ... Q9BQC6 38969660
    570737 8qu5:r (2.42) BS01 rna N/A GO:0003735 ... Q9NVS2 38969660
    570738 8qu5:s (2.42) BS01 rna N/A GO:0003723 ... Q9NP92 38969660
    570739 8qu5:u (2.42) BS01 rna N/A GO:0005515 ... Q96EH3 38969660
    570740 8qu5:v (2.42) BS01 PNS N/A GO:0000266 ... L0R8F8 38969660
    570741 8qu5:w (2.42) BS01 PNS N/A GO:0000035 ... O14561 38969660
    570742 8qu8:A (3.5) BS01 WYL ? GO:0000122 ... P40337 N/A
    570743 8qu8:E (3.5) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 N/A
    570744 8qu8:E (3.5) BS02 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 N/A
    570745 8qu8:F (3.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    570746 8qu8:F (3.5) BS02 WYL 3.6.5.2 GO:0003924 ... P01116 N/A
    570747 8qu9:A (2.88) BS01 peptide 1.16.3.1 GO:0004322 ... P02794 38714719
    570748 8qu9:A (2.88) BS02 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    570749 8qu9:A (2.88) BS03 FE 1.16.3.1 GO:0004322 ... P02794 38714719
    570750 8quc:A (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    570751 8quc:A (2.9) BS02 Y01 ? GO:0001508 ... P48547 38514618
    570752 8quc:A (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    570753 8quc:A (2.9) BS04 WY9 ? GO:0001508 ... P48547 38514618
    570754 8quc:B (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    570755 8quc:B (2.9) BS02 WY9 ? GO:0001508 ... P48547 38514618
    570756 8quc:B (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    570757 8quc:B (2.9) BS04 Y01 ? GO:0001508 ... P48547 38514618
    570758 8quc:C (2.9) BS01 WY9 ? GO:0001508 ... P48547 38514618
    570759 8quc:C (2.9) BS02 Y01 ? GO:0001508 ... P48547 38514618
    570760 8quc:C (2.9) BS03 WY9 ? GO:0001508 ... P48547 38514618
    570761 8quc:C (2.9) BS04 Y01 ? GO:0001508 ... P48547 38514618
    570762 8quc:D (2.9) BS01 Y01 ? GO:0001508 ... P48547 38514618
    570763 8quc:D (2.9) BS02 WY9 ? GO:0001508 ... P48547 38514618
    570764 8quc:D (2.9) BS03 Y01 ? GO:0001508 ... P48547 38514618
    570765 8quc:D (2.9) BS04 WY9 ? GO:0001508 ... P48547 38514618
    570766 8qud:A (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    570767 8qud:A (2.5) BS02 ZN ? GO:0001508 ... P48547 38514618
    570768 8qud:A (2.5) BS03 Y01 ? GO:0001508 ... P48547 38514618
    570769 8qud:B (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    570770 8qud:B (2.5) BS02 WY0 ? GO:0001508 ... P48547 38514618
    570771 8qud:B (2.5) BS03 ZN ? GO:0001508 ... P48547 38514618
    570772 8qud:B (2.5) BS04 Y01 ? GO:0001508 ... P48547 38514618
    570773 8qud:C (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    570774 8qud:C (2.5) BS02 WY0 ? GO:0001508 ... P48547 38514618
    570775 8qud:C (2.5) BS03 ZN ? GO:0001508 ... P48547 38514618
    570776 8qud:C (2.5) BS04 Y01 ? GO:0001508 ... P48547 38514618
    570777 8qud:D (2.5) BS01 WY0 ? GO:0001508 ... P48547 38514618
    570778 8qud:D (2.5) BS02 ZN ? GO:0001508 ... P48547 38514618
    570779 8qud:D (2.5) BS03 Y01 ? GO:0001508 ... P48547 38514618
    570780 8qud:D (2.5) BS04 WY0 ? GO:0001508 ... P48547 38514618
    570781 8qug:A (1.56) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 N/A
    570782 8qug:A (1.56) BS02 WYU 3.6.5.2 GO:0003924 ... P01116 N/A
    570783 8qv2:a (9.2) BS01 peptide ? GO:0000930 ... N/A 38609662
    570784 8qv2:a (9.2) BS02 GDP ? GO:0000930 ... N/A 38609662
    570785 8qv2:b (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570786 8qv2:c (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570787 8qv2:d (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570788 8qv2:e (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570789 8qv2:f (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570790 8qv2:g (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570791 8qv2:h (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570792 8qv2:i (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570793 8qv2:j (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570794 8qv2:k (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570795 8qv2:l (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570796 8qv2:m (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570797 8qv2:n (9.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570798 8qv3:c (8.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570799 8qv3:d (8.2) BS01 GTP ? GO:0000930 ... N/A 38609662
    570800 8qvu:A (2.24) BS01 WYL 3.6.5.2 GO:0000139 ... P01116 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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