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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    569401 8q84:L (3.15) BS01 peptide ? GO:0000775 ... Q12248 38060647
    569402 8q84:Y (3.15) BS01 peptide ? GO:0000775 ... P69851 38060647
    569403 8q84:b (3.15) BS01 peptide ? GO:0000775 ... P35734 38060647
    569404 8q8k:A (2.7) BS01 peptide ? GO:0005737 ... P52293 38108201
    569405 8q8k:B (2.7) BS01 peptide ? GO:0005737 ... P52293 38108201
    569406 8q91:A (3.1) BS01 rna ? GO:0000244 ... Q6P2Q9 38467877
    569407 8q91:A (3.1) BS02 peptide ? GO:0000244 ... Q6P2Q9 38467877
    569408 8q91:C (3.1) BS01 GTP ? GO:0000398 ... Q15029 38467877
    569409 8q91:h (3.1) BS01 rna ? GO:0000387 ... P14678 38467877
    569410 8q91:i (3.1) BS01 rna ? GO:0000243 ... P62314 38467877
    569411 8q91:j (3.1) BS01 rna ? GO:0000245 ... P62316 38467877
    569412 8q91:m (3.1) BS01 rna ? GO:0000387 ... P62306 38467877
    569413 8q91:n (3.1) BS01 rna ? GO:0000245 ... P62308 38467877
    569414 8q9s:A (1.352) BS01 QBE 2.7.11.1 GO:0000785 ... P19784 N/A
    569415 8q9t:A (2.84) BS01 rna 3.6.4.13 GO:0000956 ... P35207 37879335
    569416 8qa4:A (2.8) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    569417 8qa4:B (2.8) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    569418 8qa5:A (3.14) BS01 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    569419 8qa5:A (3.14) BS02 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    569420 8qa5:B (3.14) BS01 SAH 1.5.1.53 GO:0001666 ... P42898 38622112
    569421 8qa6:A (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    569422 8qa6:A (2.91) BS02 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    569423 8qa6:A (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    569424 8qa6:B (2.91) BS01 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    569425 8qa6:B (2.91) BS02 FAD 1.5.1.53 GO:0001666 ... P42898 38622112
    569426 8qa6:B (2.91) BS03 SAM 1.5.1.53 GO:0001666 ... P42898 38622112
    569427 8qau:B (3.54) BS01 peptide ? GO:0000775 ... P33895 N/A
    569428 8qau:C (3.54) BS01 GTP 3.6.5.- GO:0000226 ... P02550 N/A
    569429 8qau:D (3.54) BS01 GDP ? GO:0000226 ... P02554 N/A
    569430 8qau:D (3.54) BS02 TA1 ? GO:0000226 ... P02554 N/A
    569431 8qba:A (1.39) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    569432 8qba:A (1.39) BS02 GEE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    569433 8qbb:A (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569434 8qbb:B (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569435 8qbb:C (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569436 8qbb:D (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569437 8qbb:E (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569438 8qbb:F (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569439 8qbb:G (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569440 8qbb:H (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569441 8qbb:I (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569442 8qbb:J (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569443 8qbb:K (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569444 8qbb:L (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569445 8qbb:M (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569446 8qbb:N (3.86) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569447 8qbc:A (1.23) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    569448 8qbc:A (1.23) BS02 GEE 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 38264790
    569449 8qbd:A (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569450 8qbd:A (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569451 8qbd:B (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569452 8qbd:B (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569453 8qbd:C (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569454 8qbd:C (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569455 8qbd:D (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569456 8qbd:D (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569457 8qbd:E (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569458 8qbd:E (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569459 8qbd:F (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569460 8qbd:F (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569461 8qbd:G (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569462 8qbd:G (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569463 8qbd:H (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569464 8qbd:H (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569465 8qbd:I (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569466 8qbd:I (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569467 8qbd:J (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569468 8qbd:J (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569469 8qbd:K (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569470 8qbd:K (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569471 8qbd:L (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569472 8qbd:L (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569473 8qbd:M (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569474 8qbd:M (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569475 8qbd:N (3.61) BS01 I3P N/A GO:0005515 ... P53252 39048819
    569476 8qbd:N (3.61) BS02 P5S N/A GO:0005515 ... P53252 39048819
    569477 8qbn:7 (3.2) BS01 ZN ? GO:0000151 ... Q9H7D7 38759627
    569478 8qbn:W (3.2) BS01 ZN ? GO:0000151 ... Q9H7D7 38759627
    569479 8qbn:Y (3.2) BS01 ZN ? GO:0000151 ... P62699 38759627
    569480 8qbt:1 (2.2) BS01 rna ? GO:0000028 ... P0A7U3 38503735
    569481 8qbt:2 (2.2) BS01 rna ? GO:0000028 ... P0A7U7 38503735
    569482 8qbt:3 (2.2) BS01 rna ? GO:0000028 ... P68679 38503735
    569483 8qbt:C (2.2) BS01 rna ? GO:0000027 ... P60422 38503735
    569484 8qbt:C (2.2) BS02 rna ? GO:0000027 ... P60422 38503735
    569485 8qbt:D (2.2) BS01 rna ? GO:0003735 ... C3SQU2 38503735
    569486 8qbt:E (2.2) BS01 rna ? GO:0001070 ... P60723 38503735
    569487 8qbt:F (2.2) BS01 rna ? GO:0000027 ... P62399 38503735
    569488 8qbt:F (2.2) BS02 rna ? GO:0000027 ... P62399 38503735
    569489 8qbt:F (2.2) BS03 rna ? GO:0000027 ... P62399 38503735
    569490 8qbt:G (2.2) BS01 rna ? GO:0000027 ... P0AG55 38503735
    569491 8qbt:H (2.2) BS01 rna ? GO:0002181 ... P0A7R1 38503735
    569492 8qbt:J (2.2) BS01 rna ? GO:0002181 ... P0AA10 38503735
    569493 8qbt:K (2.2) BS01 rna ? GO:0002181 ... P0ADY3 38503735
    569494 8qbt:K (2.2) BS02 rna ? GO:0002181 ... P0ADY3 38503735
    569495 8qbt:L (2.2) BS01 rna ? GO:0002181 ... P02413 38503735
    569496 8qbt:M (2.2) BS01 rna ? GO:0000049 ... A0A0H3EMH6 38503735
    569497 8qbt:M (2.2) BS02 rna ? GO:0000049 ... A0A0H3EMH6 38503735
    569498 8qbt:M (2.2) BS03 rna ? GO:0000049 ... A0A0H3EMH6 38503735
    569499 8qbt:N (2.2) BS01 rna ? GO:0000027 ... P0AG44 38503735
    569500 8qbt:O (2.2) BS01 rna ? GO:0002181 ... P0C018 38503735
    569501 8qbt:O (2.2) BS02 rna ? GO:0002181 ... P0C018 38503735
    569502 8qbt:P (2.2) BS01 rna ? GO:0000027 ... P0A7K6 38503735
    569503 8qbt:P (2.2) BS02 rna ? GO:0000027 ... P0A7K6 38503735
    569504 8qbt:Q (2.2) BS01 rna ? GO:0000027 ... P0A7L3 38503735
    569505 8qbt:R (2.2) BS01 rna ? GO:0002181 ... P0AG48 38503735
    569506 8qbt:S (2.2) BS01 rna ? GO:0002181 ... P61175 38503735
    569507 8qbt:T (2.2) BS01 rna ? GO:0000027 ... P0ADZ0 38503735
    569508 8qbt:U (2.2) BS01 rna ? GO:0000027 ... P60624 38503735
    569509 8qbt:V (2.2) BS01 rna ? GO:0000027 ... P68919 38503735
    569510 8qbt:V (2.2) BS02 rna ? GO:0000027 ... P68919 38503735
    569511 8qbt:W (2.2) BS01 rna ? GO:0000027 ... P0A7L8 38503735
    569512 8qbt:W (2.2) BS02 rna ? GO:0000027 ... P0A7L8 38503735
    569513 8qbt:W (2.2) BS03 rna ? GO:0000027 ... P0A7L8 38503735
    569514 8qbt:X (2.2) BS01 rna ? GO:0000027 ... P0A7M2 38503735
    569515 8qbt:Y (2.2) BS01 rna ? GO:0000027 ... P0A7M6 38503735
    569516 8qbt:Z (2.2) BS01 rna ? GO:0000027 ... P0AG51 38503735
    569517 8qbt:Z (2.2) BS02 rna ? GO:0000027 ... P0AG51 38503735
    569518 8qbt:a (2.2) BS01 rna ? GO:0000027 ... P0A7N4 38503735
    569519 8qbt:b (2.2) BS01 rna ? GO:0000027 ... P0A7N9 38503735
    569520 8qbt:c (2.2) BS01 rna ? GO:0002181 ... P0A7P5 38503735
    569521 8qbt:d (2.2) BS01 rna ? GO:0002181 ... P0A7Q1 38503735
    569522 8qbt:e (2.2) BS01 rna ? GO:0002181 ... P0A7Q6 38503735
    569523 8qbt:e (2.2) BS02 ZN ? GO:0002181 ... P0A7Q6 38503735
    569524 8qbt:j (2.2) BS01 rna ? GO:0000028 ... P0A7V0 38503735
    569525 8qbt:m (2.2) BS01 rna ? GO:0000028 ... P0A7W1 38503735
    569526 8qbt:n (2.2) BS01 rna ? GO:0002181 ... P02358 38503735
    569527 8qbt:o (2.2) BS01 rna ? GO:0000028 ... P02359 38503735
    569528 8qbt:o (2.2) BS02 rna ? GO:0000028 ... P02359 38503735
    569529 8qbt:p (2.2) BS01 rna ? GO:0000028 ... P0A7W7 38503735
    569530 8qbt:q (2.2) BS01 rna ? GO:0000049 ... P0A7X3 38503735
    569531 8qbt:s (2.2) BS01 rna N/A GO:0003735 ... N/A 38503735
    569532 8qbt:t (2.2) BS01 rna ? GO:0000049 ... A0A0K0HEP7 38503735
    569533 8qbt:u (2.2) BS01 rna ? GO:0000049 ... P0A7S9 38503735
    569534 8qbt:v (2.2) BS01 rna ? GO:0000028 ... P0AG59 38503735
    569535 8qbt:w (2.2) BS01 rna ? GO:0000028 ... P0ADZ4 38503735
    569536 8qbt:w (2.2) BS02 rna ? GO:0000028 ... P0ADZ4 38503735
    569537 8qbt:y (2.2) BS01 rna ? GO:0000028 ... P0AG63 38503735
    569538 8qbt:z (2.2) BS01 rna ? GO:0002181 ... P0A7T7 38503735
    569539 8qbu:A (1.09) BS01 42J 2.7.11.1 GO:0000785 ... P19784 N/A
    569540 8qbu:A (1.09) BS02 3NG 2.7.11.1 GO:0000785 ... P19784 N/A
    569541 8qc4:A (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 38004425
    569542 8qc4:B (1.578) BS01 TXR 4.2.99.21
    5.4.4.2
    5.4.99.5    		 GO:0000162 ... P9WFX1 38004425
    569543 8qca:A (2.84) BS01 rna 3.6.4.13 GO:0000956 ... P35207 37879335
    569544 8qca:B (2.84) BS01 peptide ? GO:0000956 ... P17883 37879335
    569545 8qcd:A (1.03) BS01 TBS 2.7.11.1 GO:0000785 ... P19784 N/A
    569546 8qcf:C (2.55) BS01 rna ? GO:0000176 ... P46948 37879335
    569547 8qcf:I (2.55) BS01 rna ? GO:0000176 ... P38792 37879335
    569548 8qcf:K (2.55) BS01 rna 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 37879335
    569549 8qcg:A (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    569550 8qcg:A (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    569551 8qcg:B (1.04) BS01 ANP 2.7.11.1 GO:0000785 ... P19784 N/A
    569552 8qcg:B (1.04) BS02 MG 2.7.11.1 GO:0000785 ... P19784 N/A
    569553 8qch:A (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569554 8qch:A (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569555 8qch:B (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569556 8qch:B (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569557 8qch:C (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569558 8qch:C (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569559 8qch:D (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569560 8qch:D (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569561 8qch:E (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569562 8qch:E (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569563 8qch:F (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569564 8qch:F (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569565 8qch:G (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569566 8qch:G (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569567 8qch:H (2.442) BS01 EIF N/A GO:0004000 ... Q6DHV7 39190717
    569568 8qch:H (2.442) BS02 ZN N/A GO:0004000 ... Q6DHV7 39190717
    569569 8qcq:0 (2.3) BS01 rna ? GO:0003735 ... O34687 38503735
    569570 8qcq:0 (2.3) BS02 ZN ? GO:0003735 ... O34687 38503735
    569571 8qcq:1 (2.3) BS01 rna ? GO:0003735 ... P56849 38503735
    569572 8qcq:1 (2.3) BS02 ZN ? GO:0003735 ... P56849 38503735
    569573 8qcq:2 (2.3) BS01 rna ? GO:0003735 ... P05647 38503735
    569574 8qcq:3 (2.3) BS01 rna ? GO:0003735 ... P55874 38503735
    569575 8qcq:4 (2.3) BS01 rna ? GO:0003735 ... P20278 38503735
    569576 8qcq:4 (2.3) BS02 ZN ? GO:0003735 ... P20278 38503735
    569577 8qcq:6 (2.3) BS01 rna ? GO:0003735 ... Q03223 38503735
    569578 8qcq:6 (2.3) BS02 ZN ? GO:0003735 ... Q03223 38503735
    569579 8qcq:C (2.3) BS01 rna ? GO:0002181 ... P42919 38503735
    569580 8qcq:D (2.3) BS01 rna ? GO:0003735 ... P42920 38503735
    569581 8qcq:E (2.3) BS01 rna ? GO:0003735 ... P42921 38503735
    569582 8qcq:F (2.3) BS01 rna ? GO:0000049 ... P12877 38503735
    569583 8qcq:F (2.3) BS02 rna ? GO:0000049 ... P12877 38503735
    569584 8qcq:F (2.3) BS03 rna ? GO:0000049 ... P12877 38503735
    569585 8qcq:G (2.3) BS01 rna ? GO:0002181 ... P46898 38503735
    569586 8qcq:J (2.3) BS01 rna ? GO:0003729 ... P70974 38503735
    569587 8qcq:K (2.3) BS01 rna ? GO:0003735 ... P12875 38503735
    569588 8qcq:K (2.3) BS02 rna ? GO:0003735 ... P12875 38503735
    569589 8qcq:L (2.3) BS01 rna ? GO:0003735 ... P19946 38503735
    569590 8qcq:M (2.3) BS01 rna ? GO:0000049 ... P14577 38503735
    569591 8qcq:M (2.3) BS02 rna ? GO:0000049 ... P14577 38503735
    569592 8qcq:M (2.3) BS03 rna ? GO:0000049 ... P14577 38503735
    569593 8qcq:N (2.3) BS01 rna ? GO:0003735 ... P20277 38503735
    569594 8qcq:O (2.3) BS01 rna ? GO:0003735 ... P46899 38503735
    569595 8qcq:O (2.3) BS02 rna ? GO:0003735 ... P46899 38503735
    569596 8qcq:P (2.3) BS01 rna ? GO:0003735 ... O31742 38503735
    569597 8qcq:P (2.3) BS02 rna ? GO:0003735 ... O31742 38503735
    569598 8qcq:Q (2.3) BS01 rna ? GO:0000027 ... P55873 38503735
    569599 8qcq:R (2.3) BS01 rna ? GO:0003723 ... P26908 38503735
    569600 8qcq:S (2.3) BS01 rna ? GO:0003735 ... P42060 38503735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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